TCONS_00062860 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062860
Unique NameTCONS_00062860
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length344

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062860 ID=TCONS_00062860|Name=TCONS_00062860|organism=Clytia hemisphaerica|type=transcript|length=344bp
TAGATTGCGAAAGTGCAAAGTTCAAAACCTGTCGCCTTACATGATTGTGT
GTGAAAGAGATTACGATATATAATTACGATACCAAGTTTTCATTGCAACG
TCATAGTCGGGCAATTGAGTTTCTGTTTCTCAAGAGTTATATATACctgt
tcattataaaaaaatacttacagTTAAAAAGAATAAATCCACATTTCTTC
TGCACGAGGCCCGGAATCTTCGAGCtagaaaacttcgagttagcaatttt
cgagttaagaattttcaagttagctaaattatgacgtcataaaagtggat
attatgacgtcactcgactCTAGCTAACTCCAATTTCTTTTcca
Run BLAST on NCBI

transcript from alignment at scaffold_372:93932..94275

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062860 ID=TCONS_00062860|Name=TCONS_00062860|organism=Clytia hemisphaerica|type=transcript|length=344bp|location=Sequence derived from alignment at scaffold_372:93932..94275 (Clytia hemisphaerica)
tggAAAAGAAATTGGAGTTAGCTAGagtcgagtgacgtcataatatccac
ttttatgacgtcataatttagctaacttgaaaattcttaactcgaaaatt
gctaactcgaagttttctaGCTCGAAGATTCCGGGCCTCGTGCAGAAGAA
ATGTGGATTTATTCTTTTTAActgtaagtatttttttataatgaacagGT
ATATATAACTCTTGAGAAACAGAAACTCAATTGCCCGACTATGACGTTGC
AATGAAAACTTGGTATCGTAATTATATATCGTAATCTCTTTCACACACAA
TCATGTAAGGCGACAGGTTTTGAACTTTGCACTTTCGCAATCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039371XLOC_039371Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062860-exon-scaffold_372-1491911889:93932..94275TCONS_00062860-exon-scaffold_372-1491911889:93932..94275Clytia hemisphaericaexon
TCONS_00062860-exon-scaffold_372-1510915933:93932..94275TCONS_00062860-exon-scaffold_372-1510915933:93932..94275Clytia hemisphaericaexon
TCONS_00062860-exon-scaffold_372-1575043694:93932..94275TCONS_00062860-exon-scaffold_372-1575043694:93932..94275Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_372supercontigscaffold_372:93932..94275 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.262797	0	0.297552	0	0.708793	1.1202	0	0.316307	0	0	0	0	0	0	0.149225	0	0.394562	0	1.11744	1.16932	0.254087	0.371804	0.602636	0.273942	0	1.51089	1.08104	0	0.875053	1.4859
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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