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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063051 ID=TCONS_00063051|Name=TCONS_00063051|organism=Clytia hemisphaerica|type=transcript|length=3738bpRun BLAST on NCBI protein sequence of TCONS_00063051-protein >TCONS_00063051-protein ID=TCONS_00063051-protein|Name=TCONS_00063051-protein|organism=Clytia hemisphaerica|type=polypeptide|length=714bp RKAAKFYGLYFTLFLQQQSPSVHFFPESKRKFFEEELENIFRGIQVTFKMRun BLAST on NCBI transcript from alignment at scaffold_378:26107..49052- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063051 ID=TCONS_00063051|Name=TCONS_00063051|organism=Clytia hemisphaerica|type=transcript|length=22946bp|location=Sequence derived from alignment at scaffold_378:26107..49052- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_378:26107..49052- >TCONS_00063051 ID=TCONS_00063051|Name=TCONS_00063051|organism=Clytia hemisphaerica|type=CDS|length=2145bp|location=Sequence derived from alignment at scaffold_378:26107..49052- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063051 vs. Swiss-Prot (Human)
Match: TM9S2 (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1) HSP 1 Score: 873.233 bits (2255), Expect = 0.000e+0 Identity = 430/645 (66.67%), Postives = 515/645 (79.84%), Query Frame = 1
Query: 208 NSFYLPGLAPVSFXXXXXXXXXXXXLIKVFVNRLDSTENIIPYEYSSFDFCPDPNSADSAPSENLGQVVFGERIRPSPYQFQFNEKEGKCKKVCSRSYDTSKKEDKAKLEFLKKGIAQNYQHHWIVDNMPITWCYEVADSAKKYCSTGFPIGCAITDAGQPKDACVISNKYDKSGVHYIFNHISITIKYKKSDDGQWIGARLLSAKIVPDSIAHVTGADKKPACVNSNGNSLPAIGIPSKLTGKLDVTYTYDIQFEESSENIKWASRWDYILDSMPHTRIHWFSITNSLVIVLFLSGMIGMILLRTLHRDISRYNQLIDSGDDVQEEFGWKLLHGDVFRAPRAGMFLSVCVGVGTQIGVMVSITLGFACLGFLSPANRGALMTCVLVLFVCLSAVGGYFSARIYKTLGGERWKTNVMLTAFLFPGLIFGSFFILNLALWAKASSAAIPFSTLVALLALWFGISVPLTFVGAYLGFKKPPIELPVRTNQIPRQIPEQSIYTKPLPCILMGGVLPFGCIFIQLFFILNSIWSHQIYYMFGFLFVVYIILLITCSETTILLCYFHLCAEDYHWWWRSFLTSGFTGVYLFLYSIHYFVTKLQIVGHTSTFLYFGYTSIMVILFSLLTGTIGFLACFYFVYKIYGAVKVD 2142
+FYLPGLAPV+FC++ ++S++CK+ I++FVNRLDS E+++PYEY++FDFC S PSENLGQV+FGERI PSPY+F FN+KE CK VC+++Y T K EDK KLEFLKK + NYQHHWIVDNMP+TWCY+V D +++C+ GFPIGC ITD G KDACVIS+ + + YIFNH+ I I Y + G +GARL++AK+ P S H T DK P C S P + I +K +G++ + YTY + FEE + I+WASRWDYIL+SMPHT I WFSI NSLVIVLFLSGM+ MI+LRTLH+DI+RYNQ+ DS +D QEEFGWKL+HGD+FR PR GM LSV +G GTQI +M +TL FACLGFLSPANRGALMTC +VL+V L GY +AR YK+ GGE+WKTNV+LT+FL PG++F FFI+NL LW + SSAAIPF TLVA+LALWF ISVPLTF+GAY GFKK IE PVRTNQIPRQIPEQS YTKPLP I+MGG+LPFGCIFIQLFFILNSIWSHQ+YYMFGFLF+V+IIL+ITCSE TILLCYFHLCAEDYHW WRSFLTSGFT VY +Y++HYF +KLQI G ST LYFGYT IMV++F L TGTIGF ACF+FV KIY VKVD
Sbjct: 34 GAFYLPGLAPVNFCDEEKKSDECKAEIELFVNRLDSVESVLPYEYTAFDFCQ--ASEGKRPSENLGQVLFGERIEPSPYKFTFNKKE-TCKLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWIVDNMPVTWCYDVED-GQRFCNPGFPIGCYITDKGHAKDACVISSDFHERDTFYIFNHVDIKIYYHVVETGS-MGARLVAAKLEPKSFKH-THIDK-PDC------SGPPMDISNKASGEIKIAYTYSVSFEED-DKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQM-DSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663 The following BLAST results are available for this feature:
BLAST of TCONS_00063051 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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