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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063634 ID=TCONS_00063634|Name=TCONS_00063634|organism=Clytia hemisphaerica|type=transcript|length=3198bp
tgaagattgaaattttgattttgttgatgttGCTATGAGGAAATATCGAC
AgtgatgttttgtttttgaagaatatgaGTGATGGCTGTGTGTTGTGAGA
AATTGGAAAGAATCAACGAGCGAAGATAAATGATGTATCCCAGGGGTCAA
AGAGAGACATTTGGATGAACAAAGTATAATTACATACAACAACACGTAAA
AAGACAACAAGAAGCCCTTCAGTGAGTGATTTATTACAAAACGGAAACAA
CCCACTCGTCCGAAAAAAACAGAATACGGAATCCCCTATAGGAGCGGAAC
AAAGACGGATTTTCGATTTCATGGTGTGCATTAGATCCGGAACTAACTGA
TCATCGAATCCATTAGATAGTCAACAAAATAACCAGACGAATGCTATGCT
ATAATTGAGATATCTACTTCATACTTACATTACACTGAGGGAGACGCACT
TGACCTGCGATCTctctaaaatcaaaatgaataCAAATTCAGTATCACAA
GTGACTATTTTACTTTTGCTTTGTTGTGGAACATTGGTAGATTCGCTTGG
TCGTGGACGAACGCGTCCAAAAGCTAAGAAATGTGAGAAAATTACAATAC
CCTTGTGCAAAGACGTTGGATATAACGAAACATACATGCCCAATAATTTC
GGACAGAGTTCTCAATTCGAGGCTGGGCTAATCATTCATCAGTTTTGGCC
GTTGGTTTTAATCAACTGTTCACCGTTACTGAAACATTTCGTGTGCTCGT
TATATGCACCTATGTGTGATCCAATATACTTCAAAGAGATTGTACCGTGT
CGTTCATTTTGTGAAGACGTTCGCGATTCGTGTACGGCCATTATGAAAAA
CAATGGTTTTGATTGGCCTTCTCATCTAAAATGCGAACAATTTCCAACAC
GTAAAGAGAACAGTATTTGCATGAAGCCTAGTAATGCACACGTcagcaaa
aataataaaacgaCCAACAAACCAACCAGCTCACCAAACTCAAAAACAGT
TAAACCTAATACTAATAATCATGGAACGAGTGGTGGCGGAACGAAACAAT
CGGACGGACCATACCGCCCACCTACCCATATTAATACGAACGGAGGTGCT
AGAGGATGTGGGTGCATGTGTAAAGCACCCTTTGTTTATCCAAACGCCTC
CAGTAGAGGAGAACTTCCACCTTGCGTGTTACCATGTAAACAATTCTACT
TCAAAGAAGACGAGGCGAATttcgtcacattttggttaGGCTTATGGTCT
ATCATCGCCTTTATTGGAACTCTTATAACAATCGCAACCTTCTTCATTGA
TCGCTCTCGATTCACACAAGCGGAACGACCCATTGTTTTCATGTCATTCT
GTTACTTTCTAGTCGCTTTCGGCTACATTGTGCGGTTAATATACGGACAT
GACGCTATCGCTTGTGATAGTAAGACCGGGCTGGCTCGATACGCAGCCAC
TGGTCCAGCACACTGCACAACTGTATTTTTCATGACTTACTTTTTCGCTA
ATGTAGCGTGGATCTGGTGGGTTGTACTATCTATGAATTGGTTTTTATCG
AGCGGACTCAGATGGCCCAGTAAAGCTATATCGAGTTATTCCCAGTATTT
CCATTTTATCGCATGGATTGTACCAACTGTCCAGACAATGGCTATTTTGG
CCATGTCCGCAATCGATGGTGACCCGGTCAGTGGTTTATGTTCAGTTGGT
AACCATAACAACAATAACTTAACAATTTTTATGATCGCACCACTATTGAT
CTACACTATGTTGTCGCTTTCGTTTTTCGTAGCAGGAGTGATAGCAATTG
TTCAACGTAAAAGACATAATAAGTCCAATAACGGTCAAATAACACCTGAA
TATTTCGACGAAGAAAGACAAGCATGTAGTTATGTCTCAAAAATTGGGGT
ATACACTTTTATGGTATTCTTCCCTGCGTTCACCCTTATTGGCTGTTATT
TTTATGAACACAACAATAAGGAAATATGGGAAAAATCAACGAACTGCCCG
TGTGTCCGGGATAAAGTACGCCCGAACTATTATGTgtatttattgaaata
tttcatgtCTCTTGTTATTGGATTGATTTCTGGTTTTTGGGTTTTGGACT
CAAGGACAGTCGATTCATGGAAAAGATTTCTGTTGAAATTTGTTAAAGAC
GATTGTAATGAGAATAATAATTTACTGGCAGCTCAGAAATATAACGGAGC
TCCAGTACAGTTATAAATTCcgacatttcaaaattttattaaaatatttt
tgtgtttttgtgttGATATTTATATAGatgataaaaaactaaaaattttc
gttattgttattattataattattattCTGTACGAAGTAgtcatttgaaa
atattgaatttttttgagtttaaaacaAATAGTTGTTAAATTTATACTGA
AAGAagcttaaaattttgttttgaaatcaaactAAACAAATTACCATTCT
ACTTGAAGAAAGCTTGTGTAAAAAATAGCAGTAACAATAGTTGACTGTAG
AGAAATAGTGAAACGTNTCGAAGAAAGCTTGCGTAAAAAAATTGCAGAAC
TATAGTTGACTGTAAAGAAATATTGAAACGGTATCTTCGCTTTAGTAACC
ATAGTTCCTTGAATTATCCTCTCCATAATTGAGTCTTGTCTTGTTTTCGT
AGGACTGAAAAGAGGCGGTCTTACAAGACCATAATATAATTTTCATGTTT
CATTATTAATAATATTTATATGTTGAGATTATAAGAAACTTGCTCTGTGA
AACATTTTTGCCACCTTTCAAAATCATAGTGGAATAGTACCATCCTTATT
ATAGCAAGttctttaatttcaaattggTAGTAATTCTGATGCTAAGTTGT
TTAGAAGAATGCGATAATGAGATGAATGAGTCGGTCCAATTATGACTAAA
TTTGTGTTACGTCATTTGAGTATCAACCTGATATTAATTATAGGAACTTT
ATTAACGACTCCTTTACCTTCTCGTGTGCTTATATGAGAAAAATTTTTGT
GTCTTAACATTCGAAATGTATATTGAAAAGTTAAGATTACATTTTACATG
ACAATTTTATATTCGTAACTTATggaaaaagatagtatttatgtGTTATA
TATGGccccaaacaattttttgtacaacttttttctccatttaaaattat
attaaatttaTTAAGAAAGACTActgcaaaataaaaataatgttgATA Run BLAST on NCBI protein sequence of Wnt receptor frizzled 2 >TCONS_00063634-protein ID=TCONS_00063634-protein|Name=Wnt receptor frizzled 2|organism=Clytia hemisphaerica|type=polypeptide|length=579bp
MNTNSVSQVTILLLLCCGTLVDSLGRGRTRPKAKKCEKITIPLCKDVGYN
ETYMPNNFGQSSQFEAGLIIHQFWPLVLINCSPLLKHFVCSLYAPMCDPI
YFKEIVPCRSFCEDVRDSCTAIMKNNGFDWPSHLKCEQFPTRKENSICMK
PSNAHVSKNNKTTNKPTSSPNSKTVKPNTNNHGTSGGGTKQSDGPYRPPT
HINTNGGARGCGCMCKAPFVYPNASSRGELPPCVLPCKQFYFKEDEANFV
TFWLGLWSIIAFIGTLITIATFFIDRSRFTQAERPIVFMSFCYFLVAFGY
IVRLIYGHDAIACDSKTGLARYAATGPAHCTTVFFMTYFFANVAWIWWVV
LSMNWFLSSGLRWPSKAISSYSQYFHFIAWIVPTVQTMAILAMSAIDGDP
VSGLCSVGNHNNNNLTIFMIAPLLIYTMLSLSFFVAGVIAIVQRKRHNKS
NNGQITPEYFDEERQACSYVSKIGVYTFMVFFPAFTLIGCYFYEHNNKEI
WEKSTNCPCVRDKVRPNYYVYLLKYFMSLVIGLISGFWVLDSRTVDSWKR
FLLKFVKDDCNENNNLLAAQKYNGAPVQL Run BLAST on NCBI transcript from alignment at scaffold_397:51325..56576+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063634 ID=TCONS_00063634|Name=TCONS_00063634|organism=Clytia hemisphaerica|type=transcript|length=5252bp|location=Sequence derived from alignment at scaffold_397:51325..56576+ (Clytia hemisphaerica)
tgaagattgaaattttgattttgttgatgttGCTATGAGGAAATATCGAC
AgtgatgttttgtttttgaagaatatgaGTGATGGCTGTGTGTTGTGAGA
AATTGGAAAGAATCAACGAGCGAAGATAAATGATGTATCCCAGGTTAAGA
GCTTAAAGCGATCTATTTTGCTTGTTTAACCAAGCAAAGTCAAAGACGTA
CAAATACAGATTCCTTAGCTATGTATACACATGGAAAGGGGGAGGATTTT
TCATGTTTGAATATGAACAAGTTTCTCGTGAAATAACTTATTGATTAAAA
GGGTTAACACTATCTCGCGAGAATTTTCACTttgatttaggaccattgtt
tGAATAACTGCTTAAGACTTTAACTGGTGATTTTGTTGTAAAATTGAGAG
ACGCTAATGGCTATGCTAATTTCTAATGTTTACTTTGTTTTCATGTCAGT
GTTGACAAGACGATTTTTTGTTTTGGGACTTTTTTTTACCCCTTTTTTAC
TCGTTTATTAAAAGTGTAGTGAAGTGTTTCATTTTTGAGTCGGATGGGTA
GACTTTGTACGTCTGGATGAACTTGTTTACTGTTCAAGAGGCTTTATGGT
GTTTGAAATGTTTGGCTGTTTAGCATTTTGGTTTGAACGATAAAGAATTA
AATGATATGACCCAAATGACAAGTTTTATGATACTCTTTTCATGTTTTCA
CAAGCCAATACACGGTCGAAATAGATTATGGgtaaatccaaaattttttt
aaacgactttcTGCTGGTGTAAAACTTTTGTGTATATGTAGCCCCAACGG
TAAActgttacacattttttttataagaacatccaaaattttttaagcct
taagatgttcttaaccctttgggtttcaagcctaaaaatgttattatttt
cagcatttgttgagtatttttgtccattttcctaagaaaatatagtttgt
tcttataaaaaaacgtgtatgatggCGCAGTCAGTCATGATTACCTATGA
ACCATTCTGACCGTGAAATGACCTATGttcttcatttttgaatttttaaa
aggcCATATATATCTCTCTTCCTCAacgtttgaaattttcttccctCTAT
CAAGAATACTGGTCGTGGAGCGTGAAAAATCTGTAACAATTTCGCtcctt
tttttgtttgaaaattgggaaaagtAGTTAGTTAAAAGGATACAAAAAGG
GAAGAAAAtagtaaaaatgaaagaaaaatgagGAAGAAGTTTTCTTTTTC
TGGAAGTTGAAAGATAGTTGTggaaatattatattgtttggtGAATATTG
ATCCTGAACTGAAAATAAATCCTAAAATTATGACTATCGTTTACTTATTG
TGTGTGTTTGTGTGTACTTGTCGTGAGTTGAACAGGAAAAAGGGGGAAAA
GGAGGAAAATGGTACTTTCAAGAGAATTATGGGAAAAAGATTTGTAAGAA
TTTTCCCCAACACAGATGGATTGTGGGAGTTCTGATTAATCATTCGTCCA
GGCTTAGTAAGACCTGTGAATCTTTCAGATAACCATAGCTGCTGGGATAT
AGTTTAATAATGAAGGTCTTTGAGTATGATTGGATTTGATTAAGTTCTTT
TTATACAAGGGGTATTAAATTAAGTACATGGACTAAAATAGAGCTTAGAA
ATAAGGGGAAAATAGAGCCTTTTTTCTACTCTAGTATTCCATTATGTCTG
AACTAAAAAGAAGGGAATAAATTTAGCATAAACGACTAAATATATGTATG
TTTGAAAGAGAGACCGAGCCAAAATCTTAATAAAATCCTGTTGATAAACG
ATTTTAAAAGGGGATCAGGGCTAGTAAAAAGAAGGGGatagaaaaagtaa
aatacaATCCTTTATAGTGTGTTTAAGTAAACACATTTTTCAGTGATGAT
AAGATAGGGATTCTCTCTTGAGTAAGAGTATAAGGAGCCTTTATATATAC
TTGTTTCACgatatttaaaatttcttccACATTCACATACATACATGACA
GGGGAAAATATGAGTCTTGTTTTTTGTTATAGATAGTTTAGTATATAATT
TGTTTGTCAAATTACTGTGTGTGAGCTTGACACGTCTTTGTTGGTAATAT
TGACACATTTcgtcaatcaataaataaatagaaTTTCCATAAAAGtataa
actttgttttttcatttatttacctTCATTCTTTTTATCTCGTTTAGGGG
TCAAAGAGAGACATTTGGATGAACAAAGTATAATTACATACAACAACACG
TAAAAAGACAACAAGAAGCCCTTCAGTGAGTGATTTATTACAAAACGGAA
ACAACCCACTCGTCCGAAAAAAACAGAATACGGAATCCCCTATAGGAGCG
GAACAAAGACGGATTTTCGATTTCATGGTGTGCATTAGATCCGGAACTAA
CTGATCATCGAATCCATTAGATAGTCAACAAAATAACCAGACGAATGCTA
TGCTATAATTGAGATATCTACTTCATACTTACATTACACTGAGGGAGACG
CACTTGACCTGCGATCTctctaaaatcaaaatgaataCAAATTCAGTATC
ACAAGTGACTATTTTACTTTTGCTTTGTTGTGGAACATTGGTAGATTCGC
TTGGTCGTGGACGAACGCGTCCAAAAGCTAAGAAATGTGAGAAAATTACA
ATACCCTTGTGCAAAGACGTTGGATATAACGAAACATACATGCCCAATAA
TTTCGGACAGAGTTCTCAATTCGAGGCTGGGCTAATCATTCATCAGTTTT
GGCCGTTGGTTTTAATCAACTGTTCACCGTTACTGAAACATTTCGTGTGC
TCGTTATATGCACCTATGTGTGATCCAATATACTTCAAAGAGATTGTACC
GTGTCGTTCATTTTGTGAAGACGTTCGCGATTCGTGTACGGCCATTATGA
AAAACAATGGTTTTGATTGGCCTTCTCATCTAAAATGCGAACAATTTCCA
ACACGTAAAGAGAACAGTATTTGCATGAAGCCTAGTAATGCACACGTcag
caaaaataataaaacgaCCAACAAACCAACCAGCTCACCAAACTCAAAAA
CAGTTAAACCTAATACTAATAATCATGGAACGAGTGGTGGCGGAACGAAA
CAATCGGACGGACCATACCGCCCACCTACCCATATTAATACGAACGGAGG
TGCTAGAGGATGTGGGTGCATGTGTAAAGCACCCTTTGTTTATCCAAACG
CCTCCAGTAGAGGAGAACTTCCACCTTGCGTGTTACCATGTAAACAATTC
TACTTCAAAGAAGACGAGGCGAATttcgtcacattttggttaGGCTTATG
GTCTATCATCGCCTTTATTGGAACTCTTATAACAATCGCAACCTTCTTCA
TTGATCGCTCTCGATTCACACAAGCGGAACGACCCATTGTTTTCATGTCA
TTCTGTTACTTTCTAGTCGCTTTCGGCTACATTGTGCGGTTAATATACGG
ACATGACGCTATCGCTTGTGATAGTAAGACCGGGCTGGCTCGATACGCAG
CCACTGGTCCAGCACACTGCACAACTGTATTTTTCATGACTTACTTTTTC
GCTAATGTAGCGTGGATCTGGTGGGTTGTACTATCTATGAATTGGTTTTT
ATCGAGCGGACTCAGATGGCCCAGTAAAGCTATATCGAGTTATTCCCAGT
ATTTCCATTTTATCGCATGGATTGTACCAACTGTCCAGACAATGGCTATT
TTGGCCATGTCCGCAATCGATGGTGACCCGGTCAGTGGTTTATGTTCAGT
TGGTAACCATAACAACAATAACTTAACAATTTTTATGATCGCACCACTAT
TGATCTACACTATGTTGTCGCTTTCGTTTTTCGTAGCAGGAGTGATAGCA
ATTGTTCAACGTAAAAGACATAATAAGTCCAATAACGGTCAAATAACACC
TGAATATTTCGACGAAGAAAGACAAGCATGTAGTTATGTCTCAAAAATTG
GGGTATACACTTTTATGGTATTCTTCCCTGCGTTCACCCTTATTGGCTGT
TATTTTTATGAACACAACAATAAGGAAATATGGGAAAAATCAACGAACTG
CCCGTGTGTCCGGGATAAAGTACGCCCGAACTATTATGTgtatttattga
aatatttcatgtCTCTTGTTATTGGATTGATTTCTGGTTTTTGGGTTTTG
GACTCAAGGACAGTCGATTCATGGAAAAGATTTCTGTTGAAATTTGTTAA
AGACGATTGTAATGAGAATAATAATTTACTGGCAGCTCAGAAATATAACG
GAGCTCCAGTACAGTTATAAATTCcgacatttcaaaattttattaaaata
tttttgtgtttttgtgttGATATTTATATAGatgataaaaaactaaaaat
tttcgttattgttattattataattattattCTGTACGAAGTAgtcattt
gaaaatattgaatttttttgagtttaaaacaAATAGTTGTTAAATTTATA
CTGAAAGAagcttaaaattttgttttgaaatcaaactAAACAAATTACCA
TTCTACTTGAAGAAAGCTTGTGTAAAAAATAGCAGTAACAATAGTTGACT
GTAGAGAAATAGTGAAACGTNTCGAAGAAAGCTTGCGTAAAAAAATTGCA
GAACTATAGTTGACTGTAAAGAAATATTGAAACGGTATCTTCGCTTTAGT
AACCATAGTTCCTTGAATTATCCTCTCCATAATTGAGTCTTGTCTTGTTT
TCGTAGGACTGAAAAGAGGCGGTCTTACAAGACCATAATATAATTTTCAT
GTTTCATTATTAATAATATTTATATGTTGAGATTATAAGAAACTTGCTCT
GTGAAACATTTTTGCCACCTTTCAAAATCATAGTGGAATAGTACCATCCT
TATTATAGCAAGttctttaatttcaaattggTAGTAATTCTGATGCTAAG
TTGTTTAGAAGAATGCGATAATGAGATGAATGAGTCGGTCCAATTATGAC
TAAATTTGTGTTACGTCATTTGAGTATCAACCTGATATTAATTATAGGAA
CTTTATTAACGACTCCTTTACCTTCTCGTGTGCTTATATGAGAAAAATTT
TTGTGTCTTAACATTCGAAATGTATATTGAAAAGTTAAGATTACATTTTA
CATGACAATTTTATATTCGTAACTTATggaaaaagatagtatttatgtGT
TATATATGGccccaaacaattttttgtacaacttttttctccatttaaaa
ttatattaaatttaTTAAGAAAGACTActgcaaaataaaaataatgttgA
TA Coding sequence (CDS) from alignment at scaffold_397:51325..56576+ >TCONS_00063634 ID=TCONS_00063634|Name=TCONS_00063634|organism=Clytia hemisphaerica|type=CDS|length=1740bp|location=Sequence derived from alignment at scaffold_397:51325..56576+ (Clytia hemisphaerica)
atgaataCAAATTCAGTATCACAAGTGACTATTTTACTTTTGCTTTGTTG
TGGAACATTGGTAGATTCGCTTGGTCGTGGACGAACGCGTCCAAAAGCTA
AGAAATGTGAGAAAATTACAATACCCTTGTGCAAAGACGTTGGATATAAC
GAAACATACATGCCCAATAATTTCGGACAGAGTTCTCAATTCGAGGCTGG
GCTAATCATTCATCAGTTTTGGCCGTTGGTTTTAATCAACTGTTCACCGT
TACTGAAACATTTCGTGTGCTCGTTATATGCACCTATGTGTGATCCAATA
TACTTCAAAGAGATTGTACCGTGTCGTTCATTTTGTGAAGACGTTCGCGA
TTCGTGTACGGCCATTATGAAAAACAATGGTTTTGATTGGCCTTCTCATC
TAAAATGCGAACAATTTCCAACACGTAAAGAGAACAGTATTTGCATGAAG
CCTAGTAATGCACACGTcagcaaaaataataaaacgaCCAACAAACCAAC
CAGCTCACCAAACTCAAAAACAGTTAAACCTAATACTAATAATCATGGAA
CGAGTGGTGGCGGAACGAAACAATCGGACGGACCATACCGCCCACCTACC
CATATTAATACGAACGGAGGTGCTAGAGGATGTGGGTGCATGTGTAAAGC
ACCCTTTGTTTATCCAAACGCCTCCAGTAGAGGAGAACTTCCACCTTGCG
TGTTACCATGTAAACAATTCTACTTCAAAGAAGACGAGGCGAATttcgtc
acattttggttaGGCTTATGGTCTATCATCGCCTTTATTGGAACTCTTAT
AACAATCGCAACCTTCTTCATTGATCGCTCTCGATTCACACAAGCGGAAC
GACCCATTGTTTTCATGTCATTCTGTTACTTTCTAGTCGCTTTCGGCTAC
ATTGTGCGGTTAATATACGGACATGACGCTATCGCTTGTGATAGTAAGAC
CGGGCTGGCTCGATACGCAGCCACTGGTCCAGCACACTGCACAACTGTAT
TTTTCATGACTTACTTTTTCGCTAATGTAGCGTGGATCTGGTGGGTTGTA
CTATCTATGAATTGGTTTTTATCGAGCGGACTCAGATGGCCCAGTAAAGC
TATATCGAGTTATTCCCAGTATTTCCATTTTATCGCATGGATTGTACCAA
CTGTCCAGACAATGGCTATTTTGGCCATGTCCGCAATCGATGGTGACCCG
GTCAGTGGTTTATGTTCAGTTGGTAACCATAACAACAATAACTTAACAAT
TTTTATGATCGCACCACTATTGATCTACACTATGTTGTCGCTTTCGTTTT
TCGTAGCAGGAGTGATAGCAATTGTTCAACGTAAAAGACATAATAAGTCC
AATAACGGTCAAATAACACCTGAATATTTCGACGAAGAAAGACAAGCATG
TAGTTATGTCTCAAAAATTGGGGTATACACTTTTATGGTATTCTTCCCTG
CGTTCACCCTTATTGGCTGTTATTTTTATGAACACAACAATAAGGAAATA
TGGGAAAAATCAACGAACTGCCCGTGTGTCCGGGATAAAGTACGCCCGAA
CTATTATGTgtatttattgaaatatttcatgtCTCTTGTTATTGGATTGA
TTTCTGGTTTTTGGGTTTTGGACTCAAGGACAGTCGATTCATGGAAAAGA
TTTCTGTTGAAATTTGTTAAAGACGATTGTAATGAGAATAATAATTTACT
GGCAGCTCAGAAATATAACGGAGCTCCAGTACAGTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063634-exon-scaffold_397-1491911889:51325..51467 | TCONS_00063634-exon-scaffold_397-1491911889:51325..51467 | Clytia hemisphaerica | exon |
| TCONS_00063634-exon-scaffold_397-1510915933:51325..51467 | TCONS_00063634-exon-scaffold_397-1510915933:51325..51467 | Clytia hemisphaerica | exon |
| TCONS_00063634-exon-scaffold_397-1575043694:51325..51467 | TCONS_00063634-exon-scaffold_397-1575043694:51325..51467 | Clytia hemisphaerica | exon |
| TCONS_00063634-exon-scaffold_397-1491911889:53522..56576 | TCONS_00063634-exon-scaffold_397-1491911889:53522..56576 | Clytia hemisphaerica | exon |
| TCONS_00063634-exon-scaffold_397-1510915933:53522..56576 | TCONS_00063634-exon-scaffold_397-1510915933:53522..56576 | Clytia hemisphaerica | exon |
| TCONS_00063634-exon-scaffold_397-1575043694:53522..56576 | TCONS_00063634-exon-scaffold_397-1575043694:53522..56576 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_397 | supercontig | scaffold_397:51325..56576 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007166 | cell surface receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
| GO:0004888 | transmembrane signaling receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007166 |
cell surface receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0004888 |
transmembrane signaling receptor activity |
Blast
BLAST of TCONS_00063634 vs. Swiss-Prot (Human)
Match: FZD5 (Frizzled-5 OS=Homo sapiens GN=FZD5 PE=1 SV=2) HSP 1 Score: 449.899 bits (1156), Expect = 1.159e-144 Identity = 217/546 (39.74%), Postives = 320/546 (58.61%), Query Frame = 3
Query: 546 LGRGRTRPKAKKCEKITIPLCKDVGYNETYMPNNFGQSSQFEAGLIIHQFWPLVLINCSPLLKHFVCSLYAPMCDPIYFKEIVPCRSFCEDVRDSCTAIMKNNGFDWPSHLKCEQFPT--RKENSICMKPSNAHVSKNNKTTNKPTSSPNSKTVKPXXXXXXXXXXXXKQSDGPYRPPTHINTNGGARGCG---CMCKAPFV------YP--NASSRGELPPCVLPCKQFYFKEDEANFVTFWLGLWSIIAFIGTLITIATFFIDRSRFTQAERPIVFMSFCYFLVAFGYIVRLIYGHDAIACDSKTGLARYAATGPAHCTTVFFMTYFFANVAWIWWVVLSMNWFLSSGLRWPSKAISSYSQYFHFIAWIVPTVQTMAILAMSAIDGDPVSGLCSVGNHNNNNLTIFMIAPLLIYTMLSLSFFVAGVIAIVQRKRHNKSNNGQITPEYFDEERQACSYVSKIGVYTFMVFFPAFTLIGCYFYEHNNKEIWEKSTNCPCV-----RDKVRPNYYVYLLKYFMSLVIGLISGFWVLDSRTVDSWKRF 2129
+GR KA C++IT+P+C+ +GYN T+MPN F +Q EAGL +HQFWPLV I CSP L+ F+CS+Y P+C P Y K + PCRS CE + C+ +M+ GF WP + C++ P R +CM +++ TT P P T+ PP + G G C C+ PFV +P N G++P C +PC Q F DE F TFW+GLWS++ FI T T+ATF ID RF ERPI+F+S CY V+ G++VRL+ GH ++AC + Y TGPA CT VF + YFF + IWWV+LS+ WFL++G++W ++AI+ Y+QYFH AW++P+V+++ LA+S++DGDPV+G+C VGN N N+L F++ PL++Y ++ F +AG +++ R R G T D+ + + +IG++T + PA ++ CY YE + +E WE + C C + + +P Y+V +LKYFM LV+G+ SG W+ +TV+SW+RF
Sbjct: 21 VGRAAAASKAPVCQEITVPMCRGIGYNLTHMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLRFFLCSMYTPICLPDYHKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMSCDRLPVLGRDAEVLCMD-----YNRSEATTAPPRPFPAKPTLP--------------------GPPGAPASGGECPAGGPFVCKCREPFVPILKESHPLYNKVRTGQVPNCAVPCYQPSFSADERTFATFWIGLWSVLCFISTSTTVATFLIDMERFRYPERPIIFLSACYLCVSLGFLVRLVVGHASVACSREHNHIHYETTGPALCTIVFLLVYFFGMASSIWWVILSLTWFLAAGMKWGNEAIAGYAQYFHLAAWLIPSVKSITALALSSVDGDPVAGICYVGNQNLNSLRGFVLGPLVLYLLVGTLFLLAGFVSLF-RIRSVIKQGGTKT----DKLEK---LMIRIGIFTLLYTVPASIVVACYLYEQHYRESWEAALTCACPGHDTGQPRAKPEYWVLMLKYFMCLVVGITSGVWIWSGKTVESWRRF 533
The following BLAST results are available for this feature:
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