TCONS_00063720 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063720
Unique NameTCONS_00063720
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063720 ID=TCONS_00063720|Name=TCONS_00063720|organism=Clytia hemisphaerica|type=transcript|length=1270bp
aaaagtgctCTTTTCTTCTCAGTAGCGCTTCAGTAAGTCGCTCCATTGGA
AAACAGGGTTTTTCCCAAGCTGTCAGTCAAAGTGGCTGAATCAATCAATG
GAATTTACATTTTTTAGACGTATTTCCCATTCTTCCtctattttaaaaat
aagtgaAAGAAGAAGAAGTAGCAAAGGTGCTGTTCTTATAATTGCTATAA
CTCACTGTTACACTTTACTCGGTTGTCCTGGTAAAAGACATAATTTGGGT
TCTTGCAACATAAAATCAATAATgattatttttagcatttttagtAAAAT
GTTTTATAACCtcctttttagaaatttcaatcaagatgctaaaatgaaaa
tattctgTAACTTATCAACAAAAGATCTCACTGAACTCACCAAATACGAT
GTATTCGAACTTGAAATTAAACTAGCTGTTTTGCTTGGAGAAAGCCAATT
TGGCAAGGATTTAAAATATGGAGCCGTCATCGATTGCTTTACCAACATCT
TCTTGTTTGGGAATGAGGTTTCTCTGTCAATAACACAATTATCATGGTTA
CTGAATACTCAAGAACACTTGTTAAATCTTTGTGAACAAGGGACCTCATT
ATCAAACAGTATCAGTTTACTTCACGAATTGATTTTCTCCTTAcctgaaa
accaaaatcaggaGACATCCAAacaaattcttgattttctaCTGAAAAGC
TTTTACCAACACTATCACCTGTACCAACACATGTTGACTAAAGCTCAGCA
AACTGTCCAACTGAATAAGATTatcGACGTTGAAACGGTTCCCACGACTC
AAACGTTCCCTTGTCCTTTGGAAGAAAGCATTCTTGAAAGTTTGTATGAA
GAATATCTCAACCCGAAACCTAAAGAAGATGATGAAAAGTCGGCAGAAGA
AAATCCATCAAAGACATCATCCGTAACAGAATCACAAccgattgatgacg
tcacaactTTGTTGGCTTCTCTTAAACCAGACGAATTAAGAAAACTCATT
CAAGATATTGCCGAATCAAAATTCAATAGTTTTAAAgtCGAAATGGAAGG
GAAGATAAGTGACAAGGAGACTGCAATGAACAAAACATTCAGTAAGTTAC
ACGCACGTTAATATATGAGTATTCCCTCCTTTGTTACTTAATTAATTTAT
TGAAGGTCATGTGACATGTAAATAAGTGAATTTTatagttatattttttg
atttttcatctttgtGTGTTTATGGGAAATATCAAAGCTATTCTACGGAA
TGACGTAAtcgtaaaaatat
Run BLAST on NCBI

protein sequence of TCONS_00063720-protein

>TCONS_00063720-protein ID=TCONS_00063720-protein|Name=TCONS_00063720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MEFTFFRRISHSSSILKISERRRSSKGAVLIIAITHCYTLLGCPGKRHNL
GSCNIKSIMIIFSIFSKMFYNLLFRNFNQDAKMKIFCNLSTKDLTELTKY
DVFELEIKLAVLLGESQFGKDLKYGAVIDCFTNIFLFGNEVSLSITQLSW
LLNTQEHLLNLCEQGTSLSNSISLLHELIFSLPENQNQETSKQILDFLLK
SFYQHYHLYQHMLTKAQQTVQLNKIIDVETVPTTQTFPCPLEESILESLY
EEYLNPKPKEDDEKSAEENPSKTSSVTESQPIDDVTTLLASLKPDELRKL
IQDIAESKFNSFKVEMEGKISDKETAMNKTFSKLHAR
Run BLAST on NCBI

transcript from alignment at scaffold_399:172892..177390-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063720 ID=TCONS_00063720|Name=TCONS_00063720|organism=Clytia hemisphaerica|type=transcript|length=4499bp|location=Sequence derived from alignment at scaffold_399:172892..177390- (Clytia hemisphaerica)
AAAAGTGCTCTTTTCTTCTCAGTAGCGCTTCAGTAAGTCGCTCCATTGGA
AAACAGGGTTTTTCCCAAGCTGTCAGTCAAAGTGGCTGAATCAATCAATG
GAATTTACATTTTTTAGACGTATTTCCCATTCTTCCTCTATTTTAAAAAT
AAGTGAAAGAAGAAGAAGTAGCAAAGGTGCTGTTCTTATAATTGCTATAA
CTCACTGTTACACTTTACTCGGTTGTCCTGGTAAAAGACATAATTTGGGT
TCTTGCAACATAAAATCAATAATGATTATTTTTAGCATTTTTAGTAAAAT
GTTTTATAACCTCCTTTTTAGAAATTTCAATCAAGATGCTAAAATGAAAA
TATTCTGTAACTTATCAACAAAAGATCTCACTGAACTCACCAAATACGAT
GTATTCGAACTTGAAATGTATAATGTTTTTTTATATTTGGCTCTCCATAG
TCTGAATTGAAAGGGAGATCTATTATTGTTTTTACTGCTAATGTTTTTGT
TTTACATGACAATAGCTGAAAATTAGTTTAAAATCGAGAACGGTTTGAAT
GATTCCAAATAAAGGCTAATAGGAAAATCTTCTTTTCTTATCTGGAAACT
GTTTCACAATCGAAACAGTTGCTTTGATTGAATAGAACGGTATATAATTG
CAAGACAATCAGTTCTTATTTTATTTTAATCCGTAACTCAAGAGATTTTC
TTACATTTTATAAATTTGAATTGTCATTTTTCTTAAAATAAACTATTCAA
TATACTGAAAATTTATTTTGGCCCTGCCATCAGTAAACATTTTAAATGAA
TAAATGACAGTAGTGTTTTTATAAGGTATAAGTGATTTTACCCCTGTAAA
GTATGCTACATTTTACACCATGAATATTAAAATAATGATACAATTTGTAA
AGTTTGTCTTTATTAATCCTTTCAGTAAACTAGCTGTTTTGCTTGGAGAA
AGCCAATTTGGCAAGGATTTAAAATATGGAGCCGTCATCGATTGCTTTAC
CAACATCTTCTTGTAAGTAAATCTTTAGTACTTTATATAGAATTAATATT
TGCAGGGAGACTATGCAGTTTATACTACAAGACATTATCAGTAAGCTCTA
TATTGAGGTCGACAATTCTATACCACGTAATTCACGTAATTTGTTCTCAA
ATTACTATTTTTAGATAGTTACTACACTATTTAGCAGTAATAATCTAAGG
GTGTAAAATTTGTAAAATCTGGCCATTTTTTGCCTTAAAATGTAAAAAAA
TTTCAAAAAAACGCACCGTTAGGGTAGATTTTTCGCCCAAATTTTCTCGA
ATTTGGCTAAGGGTCTGGTATCAAGACATAATTTTGGGCTCTACGTACGG
TTGTTTGTGAATCGAGTACGCCCCCAGGAGAATTTATATAACAATAGGTT
TCAATTCTTTCTTTAACCGCTTCATTCTATTACTAGGTTTGGGAATGAGG
TTTCTCTGTCAATAACACAATTATCATGGTTACTGAATACTCAAGAACAC
TTGTTAAATCTTTGTGAACAAGGGACCTCATTATCAAACAGTATCAGTTT
ACTTCACGAATTGATTTTCTCCTTACCTGAAAACCAAAATCAGGAGACAT
CCAAACAAATTCTTGATTTTCTACTGAAAAGGTATGTTTTTTCTATTCCC
TGTTTATCTTTGACAAGCACCAGTTGACCCCCCGGACATTAAAAATCACC
CCTAATTAGAGCAAGTTTACCCCTAAAACAAGGCAAGTTTTGCAGATTTT
TGCACTATTAGTAGGGGGAATTTTGTTCGATTTTTTGGAATCGCTCGATT
GTTTTGTTAGAAGCACTTGTTATACATTTTTGGAAAGCTAAGGTGTAGGG
GAATCGAAATTACGATGTTTCCAATTTTTTTTCGGACACTTTGGTGTGAT
TTTCGAACAAATATGACGGTCTCAGGCAAAAATCATAGGGTTAAAAATTA
ATGAAAATTTTAGCTCGAGAAAACGGAGACCTGTGTTATGTTTTTGGAAA
GCTCTCAAAAAATTAAGATTAGAGATATATTGCAAGTATAGGTGATTTCT
GTACTTAACTCGAGATATTATCCCTTGAAAACCGTGTTTTTCAGCCAGAA
ACAGCTATTTTGTCCAGTTTTTGTGCTTTTTGTAGCTCAATATCTCGAGT
TAGGTACTGAAATCACCTATACTTGCGATATATCTATAATCCTAATTTTT
TGAGAGCTTACCAAAAATATACAACAGGTCCCTGTTTTCTCGAGCTAAAA
TTGTCATTAATTTTTAACCCTATGATTTTTGCCTGAGACCGTCATATTTG
TCCGAAAATCACACCAAAGTGTCCGAAAAAAATTGGAAACATCGTAATTT
CGATTCCCTTACCCCTTAGCTTTCCAAAAATTTATAACAAGTGCTTTGAC
TAAACCAGTCGAGCGATTTTACAAAATGCCCTCTACTATATCCCCCGGAC
AAAATATCAAATATATCCTCCAACACCCCTCCTTATGCACAAAAATGTTT
CTGGAAGAGCCCATTAGAACTTTCTGTTGTAGATGAAGGATTAGAACAGA
AATTTCCAAAACTATATAAAAAATAGTTAAATGTCCGAATCAAATCTTAT
AAATCCTGTGATATCTGAAAAAAAAAACATCCAGTTGTAAACAGGTCGAC
ATCAGTCCCTTGACGCAAGATATCCGATATAGTTTAGAAGGCAAAACTAG
ATGACAAAGATTTCTTCATCTTTTCAAATAGAGTTTTTTTGATTTCAGCT
TTTACCAACACTATCACCTGTACCAACACATGTTGACTAAAGCTCAGCAA
ACTGTCCAACTGAATAAGATTGTAAGAGAATCAGTGTTATTTTTTATTCT
TTACCAAGCCTTGGTGATTCTGAAGCTAAATTCTTTAGAAGTTTTTTGTG
AGCTTTAAAAGCAAAGTACTATTAAAGACGATACAGTACTTTCTACCCAC
CTTTCTCCCCACCTTTCTCCCCACCTTTCTGTTGGGGAATTTTTTCTCCA
AAAGTTTCAAGCGATTTCAACTTTTTAACAGAAAGTCACATTTTTAGTTT
TTTGTATGATTTTTCTTCCTCAAAGCACATGGCAGATGTTTTTCTTTCTT
AAAAAAAATTAATTCTCCGGAATCAGCTCGTGAAAGGGGAGAGGGAGGAG
AAAGTTTTAATTTTCCTGGAGACCGAAAACTGGGCAGTTTAAAATTCCGG
GATTGGGGGTGGCCGACCCAGAATTAAATCATTTTTCATAATTTGCTGTA
TGCATAACCTCACTATTATTCTTGATTATGAAATTTCAACACAAAAATTA
TTTTAGATCGACGTTGAAACGGTTCCCACGACTCAAACGTTCCCTTGTCC
TTTGGAAGAAAGCATTCTTGAAAGTTTGTATGAAGAATATCTCAACCCGA
AACCTAAAGAAGATGATGTAAGTCTTGAAAATGTTAAAACAATTTTTGAA
AATAACTATAACTGGATTTACTGGATACTTTTAGGGATGACTAAAGTATT
TAACTTGATTAACGGTTTAAAGATGGGTGTTTTCAAGATTCTTAGTGCAA
AAAGATTTTTCAAAGAGGCGTAAAACATTTAAAAAAGCACTGTTCTTTCA
TTAACTCTACTCTATACTAGTTTAAACTCTAAGTTGCCAGACTGGAGTAA
TCTTGGGTCTAAGATTTTTTGTCTACTTTGCTTATTCGAAGTCAGTAGCG
TAAACAGGTGGGCGCAAAATTTTCGTACGAGAGTAGATTTTTATGACACT
GTAATACTCTTTTCAAAATATAATTACTGTGTTATAAAAATCTGCACTTC
TACACAAATTTTGCGCCCCTCTTGTCTACGCTACTGGAAGTCTGTATTTT
TAATGTAAATCTGCCATGTTGTGTTCACAGGAAAAGTCGGCAGAAGAAAA
TCCATCAAAGACATCATCCGTAACAGAATCACAACCGATTGATGACGTCA
CAACTTTGTTGGCTTCTCTTAAACCAGACGAATTAAGAAAACTCATTCAA
GATATTGCCGAATCAAAATTCAATAGTTTTAAAGTAAGAGTTACTGTCAG
TTTGGGAGTTTCAATTTCGCTCTATAAGTAGTGGTAGTTTTTATTTTGAG
TTTAGGCCATAGATTTTTTTGCGGTTGAGGCCTGTCTACGAACTTATGAA
TGAAAAACAGGAACACTCGCAAATGCAATCAAATTTTTTAGTAATTTAGA
TAATGTAGTATTGATATTATACCGGTAGATAAAAGTTTCAAAATTTTCAA
AATTTATATTTTCAGGTCGAAATGGAAGGGAAGATAAGTGACAAGGAGAC
TGCAATGAACAAAACATTCAGTAAGTTACACGCACGTTAATATATGAGTA
TTCCCTCCTTTGTTACTTAATTAATTTATTGAAGGTCATGTGACATGTAA
ATAAGTGAATTTTATAGTTATATTTTTTGATTTTTCATCTTTGTGTGTTT
ATGGGAAATATCAAAGCTATTCTACGGAATGACGTAATCGTAAAAATAT

Coding sequence (CDS) from alignment at scaffold_399:172892..177390-

>TCONS_00063720 ID=TCONS_00063720|Name=TCONS_00063720|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_399:172892..177390- (Clytia hemisphaerica)
ATGGAATTTACATTTTTTAGACGTATTTCCCATTCTTCCTCTATTTTAAA
AATAAGTGAAAGAAGAAGAAGTAGCAAAGGTGCTGTTCTTATAATTGCTA
TAACTCACTGTTACACTTTACTCGGTTGTCCTGGTAAAAGACATAATTTG
GGTTCTTGCAACATAAAATCAATAATGATTATTTTTAGCATTTTTAGTAA
AATGTTTTATAACCTCCTTTTTAGAAATTTCAATCAAGATGCTAAAATGA
AAATATTCTGTAACTTATCAACAAAAGATCTCACTGAACTCACCAAATAC
GATGTATTCGAACTTGAAATTAAACTAGCTGTTTTGCTTGGAGAAAGCCA
ATTTGGCAAGGATTTAAAATATGGAGCCGTCATCGATTGCTTTACCAACA
TCTTCTTGTTTGGGAATGAGGTTTCTCTGTCAATAACACAATTATCATGG
TTACTGAATACTCAAGAACACTTGTTAAATCTTTGTGAACAAGGGACCTC
ATTATCAAACAGTATCAGTTTACTTCACGAATTGATTTTCTCCTTACCTG
AAAACCAAAATCAGGAGACATCCAAACAAATTCTTGATTTTCTACTGAAA
AGCTTTTACCAACACTATCACCTGTACCAACACATGTTGACTAAAGCTCA
GCAAACTGTCCAACTGAATAAGATTATCGACGTTGAAACGGTTCCCACGA
CTCAAACGTTCCCTTGTCCTTTGGAAGAAAGCATTCTTGAAAGTTTGTAT
GAAGAATATCTCAACCCGAAACCTAAAGAAGATGATGAAAAGTCGGCAGA
AGAAAATCCATCAAAGACATCATCCGTAACAGAATCACAACCGATTGATG
ACGTCACAACTTTGTTGGCTTCTCTTAAACCAGACGAATTAAGAAAACTC
ATTCAAGATATTGCCGAATCAAAATTCAATAGTTTTAAAGTCGAAATGGA
AGGGAAGATAAGTGACAAGGAGACTGCAATGAACAAAACATTCAGTAAGT
TACACGCACGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039943XLOC_039943Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063720-proteinTCONS_00063720-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063720-exon-scaffold_399-1575043694:176974..177390TCONS_00063720-exon-scaffold_399-1575043694:176974..177390Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1575043694:176379..176465TCONS_00063720-exon-scaffold_399-1575043694:176379..176465Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1575043694:175760..175954TCONS_00063720-exon-scaffold_399-1575043694:175760..175954Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1575043694:174570..174642TCONS_00063720-exon-scaffold_399-1575043694:174570..174642Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1575043694:173974..174084TCONS_00063720-exon-scaffold_399-1575043694:173974..174084Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1575043694:173358..173510TCONS_00063720-exon-scaffold_399-1575043694:173358..173510Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1575043694:172892..173125TCONS_00063720-exon-scaffold_399-1575043694:172892..173125Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1510915933:176974..177390TCONS_00063720-exon-scaffold_399-1510915933:176974..177390Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1510915933:176379..176465TCONS_00063720-exon-scaffold_399-1510915933:176379..176465Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1510915933:175760..175954TCONS_00063720-exon-scaffold_399-1510915933:175760..175954Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1510915933:174570..174642TCONS_00063720-exon-scaffold_399-1510915933:174570..174642Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1510915933:173974..174084TCONS_00063720-exon-scaffold_399-1510915933:173974..174084Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1510915933:173358..173510TCONS_00063720-exon-scaffold_399-1510915933:173358..173510Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1510915933:172892..173125TCONS_00063720-exon-scaffold_399-1510915933:172892..173125Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1491911889:176974..177390TCONS_00063720-exon-scaffold_399-1491911889:176974..177390Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1491911889:176379..176465TCONS_00063720-exon-scaffold_399-1491911889:176379..176465Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1491911889:175760..175954TCONS_00063720-exon-scaffold_399-1491911889:175760..175954Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1491911889:174570..174642TCONS_00063720-exon-scaffold_399-1491911889:174570..174642Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1491911889:173974..174084TCONS_00063720-exon-scaffold_399-1491911889:173974..174084Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1491911889:173358..173510TCONS_00063720-exon-scaffold_399-1491911889:173358..173510Clytia hemisphaericaexon
TCONS_00063720-exon-scaffold_399-1491911889:172892..173125TCONS_00063720-exon-scaffold_399-1491911889:172892..173125Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_399supercontigscaffold_399:172892..177390 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
116.498	117.517	116.723	114.455	52.7138	39.9447	63.453	60.2894	54.7209	44.2214	53.9325	56.1192	27.5314	29.0304	20.1834	21.1912	17.5713	27.3237	38.5667	33.1041	27.7066	25.5463	58.9276	52.5281	97.112	89.682	32.6912	35.525	30.062	29.7966
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032727CLAMP
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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