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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063781 ID=TCONS_00063781|Name=TCONS_00063781|organism=Clytia hemisphaerica|type=transcript|length=1506bpRun BLAST on NCBI transcript from alignment at scaffold_400:62429..70150+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063781 ID=TCONS_00063781|Name=TCONS_00063781|organism=Clytia hemisphaerica|type=transcript|length=7722bp|location=Sequence derived from alignment at scaffold_400:62429..70150+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00063781 vs. Swiss-Prot (Human)
Match: ZN227 (Zinc finger protein 227 OS=Homo sapiens GN=ZNF227 PE=1 SV=1) HSP 1 Score: 436.417 bits (1121), Expect = 8.011e-144 Identity = 219/407 (53.81%), Postives = 265/407 (65.11%), Query Frame = 2
Query: 284 THVESRKFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTCSSSSNLKKHLLTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTFSSSSNLKKHLLTHTGEKPFKCDICGKAFRDTSALKGHVRIHTGEKPYKCTYCEKVFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFAHTGERPFKSDLSDNRTFSCTYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYKCDICDKGFRVSSALKVHFRIHTGEKPYKCIYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFTHTGE 1504
H + + C C KGF +S+ L IH RTHTGEKPYKC +C K S SSN + H HT EKPYKC +C K S NL+ HQ H GEKP+KC+ CGK F + +H R+HTGE+PYKC C KGF +S L H R HTGEKPYKC C K F+ +++L H HTGEKP+KC CGK F S L+ H +HTGEK +KC C K F SS L++H R HTGEKPY C+VCGK FS S++L+ HQ HTGE+P+K C C KGF S+L H R H+GEKPY+C C+K+FS + + + HQ +HTGEKPYKC +C KGF SS L+ H R+HTGEKPYKC C KGFR SS H R HTGEKPY+C CGK F +S +LR HQ HTGE
Sbjct: 317 NHTGEKSYRCDSCGKGFSSSTGLIIHYRTHTGEKPYKCEECGKCFSQSSNFQCHQRVHTEEKPYKCEECGKGFGWSVNLRVHQRVHRGEKPYKCEECGKGFTQAAHFHIHQRVHTGEKPYKCDVCGKGFSHNSPLICHRRVHTGEKPYKCEACGKGFTRNTDLHIHFRVHTGEKPYKCKECGKGFSQASNLQVHQNVHTGEKRFKCETCGKGFSQSSKLQTHQRVHTGEKPYRCDVCGKDFSYSSNLKLHQVIHTGEKPYK----------CEECGKGFSWRSNLHAHQRVHSGEKPYKCEQCDKSFSQAIDFRVHQRVHTGEKPYKCGVCGKGFSQSSGLQSHQRVHTGEKPYKCDVCGKGFRYSSQFIYHQRGHTGEKPYKCEECGKGFGRSLNLRHHQRVHTGE 713 HSP 2 Score: 430.254 bits (1105), Expect = 2.301e-141 Identity = 217/407 (53.32%), Postives = 262/407 (64.37%), Query Frame = 2
Query: 284 THVESRKFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTCSSSSNLKKHLLTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTFSSSSNLKKHLLTHTGEKPFKCDICGKAFRDTSALKGHVRIHTGEKPYKCTYCEKVFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFAHTGERPFKSDLSDNRTFSCTYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYKCDICDKGFRVSSALKVHFRIHTGEKPYKCIYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFTHTGE 1504
TH + + C C K F SS+ + H R HT EKPYKC +C K S NL+ H H GEKPYKC +C K + +++ HQ H GEKP+KCD+CGK F S L H R+HTGE+PYKC C KGF ++DL IH R HTGEKPYKC +C K FS +SNL+ H HTGEK FKC+ CGK F +S L+ H R+HTGEKPY+C C K F SS+LK H HTGEKPY+C CGK FS ++L HQ H+GE+P+K C C+K F + D ++H R HTGEKPY+C C K FS SS L+ HQ +HTGEKPYKCD+C KGFR SS H R HTGEKPYKC C KGF S +L+ H R HTGEKP+ C CGK FS ++LR H HT E
Sbjct: 345 THTGEKPYKCEECGKCFSQSSNFQCHQRVHTEEKPYKCEECGKGFGWSVNLRVHQRVHRGEKPYKCEECGKGFTQAAHFHIHQRVHTGEKPYKCDVCGKGFSHNSPLICHRRVHTGEKPYKCEACGKGFTRNTDLHIHFRVHTGEKPYKCKECGKGFSQASNLQVHQNVHTGEKRFKCETCGKGFSQSSKLQTHQRVHTGEKPYRCDVCGKDFSYSSNLKLHQVIHTGEKPYKCEECGKGFSWRSNLHAHQRVHSGEKPYK----------CEQCDKSFSQAIDFRVHQRVHTGEKPYKCGVCGKGFSQSSGLQSHQRVHTGEKPYKCDVCGKGFRYSSQFIYHQRGHTGEKPYKCEECGKGFGRSLNLRHHQRVHTGEKPHICEECGKAFSLPSNLRVHLGVHTRE 741 HSP 3 Score: 416.772 bits (1070), Expect = 2.964e-136 Identity = 211/406 (51.97%), Postives = 260/406 (64.04%), Query Frame = 2
Query: 284 THVESRKFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTCSSSSNLKKHLLTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTFSSSSNLKKHLLTHTGEKPFKCDICGKAFRDTSALKGHVRIHTGEKPYKCTYCEKVFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFAHTGERPFKSDLSDNRTFSCTYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYKCDICDKGFRVSSALKVHFRIHTGEKPYKCIYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFTHTG 1501
H + + C C KGF ++ IH R HTGEKPYKC+ C K S +S L H HTGEKPYKC C K + +++L H H GEKP+KC CGK F S L+VH +HTGE+ +KC C KGF SS L+ H R HTGEKPY+C+ C K FS SSNLK H + HTGEKP+KC+ CGK F S L H R+H+GEKPYKC C+K F + D + H R HTGEKPY+C VCGK FSQS+ L+ HQ HTGE+P+K D+ C KGFR SS H R HTGEKPY+C +C K F S NL+ HQ +HTGEKP+ C+ C K F + S L+VH +HT EK +KC C KGF S+ L++H R HTGEKPY+C++C K F + L HQ HTG
Sbjct: 401 VHRGEKPYKCEECGKGFTQAAHFHIHQRVHTGEKPYKCDVCGKGFSHNSPLICHRRVHTGEKPYKCEACGKGFTRNTDLHIHFRVHTGEKPYKCKECGKGFSQASNLQVHQNVHTGEKRFKCETCGKGFSQSSKLQTHQRVHTGEKPYRCDVCGKDFSYSSNLKLHQVIHTGEKPYKCEECGKGFSWRSNLHAHQRVHSGEKPYKCEQCDKSFSQAIDFRVHQRVHTGEKPYKCGVCGKGFSQSSGLQSHQRVHTGEKPYKCDV----------CGKGFRYSSQFIYHQRGHTGEKPYKCEECGKGFGRSLNLRHHQRVHTGEKPHICEECGKAFSLPSNLRVHLGVHTREKLFKCEECGKGFSQSARLEAHQRVHTGEKPYKCDICDKDFRHRSRLTYHQKVHTG 796 HSP 4 Score: 406.757 bits (1044), Expect = 2.193e-132 Identity = 211/394 (53.55%), Postives = 256/394 (64.97%), Query Frame = 2
Query: 323 EKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTCSSSSNLKKHLLTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTFSSSSNLKKHLLTHTGEKPFKCDICGKAFRDTSALKGHVRIHTGEKPYKCTYCEKVFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFAHTGERPFKSDLSDNRTFSCTYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYKCDICDKGFRVSSALKVHFRIHTGEKPYKCIYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFTHTGE 1504
EK F SS L+ H R H GEK +C++ C + S+ + HTGEK Y+C+ C K SSS+ L H TH GEKP+KC+ CGK F +S + H R+HT E+PYKC C KGF S +L++H R H GEKPYKC +C K F+ +++ H HTGEKP+KCD+CGK F S L H R+HTGEKPYKC C K F ++DL H R HTGEKPY+C CGK FSQ+++L+ HQ HTGE+ FK C C KGF SS L+ H R HTGEKPY C C K FS SSNLK HQ IHTGEKPYKC+ C KGF S L H R+H+GEKPYKC C+K F + D + H R HTGEKPY+C VCGK FSQS+ L+ HQ HTGE
Sbjct: 275 EKCFSQSSHLRTHQRIHPGEKLNRCHE-SGDCFNKSSFHSYQSNHTGEKSYRCDSCGKGFSSSTGLIIHYRTHTGEKPYKCEECGKCFSQSSNFQCHQRVHTEEKPYKCEECGKGFGWSVNLRVHQRVHRGEKPYKCEECGKGFTQAAHFHIHQRVHTGEKPYKCDVCGKGFSHNSPLICHRRVHTGEKPYKCEACGKGFTRNTDLHIHFRVHTGEKPYKCKECGKGFSQASNLQVHQNVHTGEKRFK----------CETCGKGFSQSSKLQTHQRVHTGEKPYRCDVCGKDFSYSSNLKLHQVIHTGEKPYKCEECGKGFSWRSNLHAHQRVHSGEKPYKCEQCDKSFSQAIDFRVHQRVHTGEKPYKCGVCGKGFSQSSGLQSHQRVHTGE 657 HSP 5 Score: 369.007 bits (946), Expect = 6.085e-118 Identity = 184/352 (52.27%), Postives = 228/352 (64.77%), Query Frame = 2
Query: 284 THVESRKFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTCSSSSNLKKHLLTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTFSSSSNLKKHLLTHTGEKPFKCDICGKAFRDTSALKGHVRIHTGEKPYKCTYCEKVFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFAHTGERPFKSDLSDNRTFSCTYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYKCDICDKGFRVSSALKVHFRIHTGEK 1339
H + + C C KGF ++DL IH R HTGEKPYKC +C K S +SNL+ H HTGEK +KC C K S SS L+ HQ H GEKP++CD+CGK F +S L++H IHTGE+PYKC C KGF S+L H R H+GEKPYKC C+K+FS + + + H HTGEKP+KC +CGK F +S L+ H R+HTGEKPYKC C K FR SS H R HTGEKPY+C CGK F +S +LR HQ HTGE+P C C K F S+L++H HT EK ++C +C K FS S+ L+ HQ +HTGEKPYKCDICDK FR S L H ++HTG+K
Sbjct: 457 VHTGEKPYKCEACGKGFTRNTDLHIHFRVHTGEKPYKCKECGKGFSQASNLQVHQNVHTGEKRFKCETCGKGFSQSSKLQTHQRVHTGEKPYRCDVCGKDFSYSSNLKLHQVIHTGEKPYKCEECGKGFSWRSNLHAHQRVHSGEKPYKCEQCDKSFSQAIDFRVHQRVHTGEKPYKCGVCGKGFSQSSGLQSHQRVHTGEKPYKCDVCGKGFRYSSQFIYHQRGHTGEKPYKCEECGKGFGRSLNLRHHQRVHTGEKP----------HICEECGKAFSLPSNLRVHLGVHTREKLFKCEECGKGFSQSARLEAHQRVHTGEKPYKCDICDKDFRHRSRLTYHQKVHTGKK 798 HSP 6 Score: 288.886 bits (738), Expect = 1.229e-87 Identity = 163/382 (42.67%), Postives = 208/382 (54.45%), Query Frame = 2
Query: 551 KPFKCDICGKAFCDTSALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRT----------------------------------------------HTGEKPYKCNDCEKTFSSSSNLKKHLLTHTGEKPFKCDICGKAFRDTSALKGHVRIHTGEKPYKCTYCEKVFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFAHTGERPFKSDL------------------SDNRTFSCTYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYKCDICDKGFRVSSALKVHFRIHTGEKPYKCIYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFTHTGE 1504
KP K + GK D S ++ + GE+P+ CG C +GF S L +H HTGEK Y+C+ C K FSSS+ L H THTGEKP+KC+ CGK F +S + H R+HT EKPYKC C K F S +L+ H R H GEKPY+C CGK F+Q+ HQ HTGE+P+K D+ + + + C C KGF ++DL IH R HTGEKPY+C +C K FS +SNL+ HQ++HTGEK +KC+ C KGF SS L+ H R+HTGEKPY+C C K F SS+LK H HTGEKPY+C CGK FS ++L HQ H+GE
Sbjct: 224 KPCKGNEYGKIISDGSNQKLPL----GEKPHPCGECGRGFSYSPRLPLHPNVHTGEKCFSQSSHLRTHQRIHPGEKLNRCHESGDCFNKSSFHSYQSNHTGEKSYRCDSCGKGFSSSTGLIIHYRTHTGEKPYKCEECGKCFSQSSNFQCHQRVHTEEKPYKCEECGKGFGWSVNLRVHQRVHRGEKPYKCEECGKGFTQAAHFHIHQRVHTGEKPYKCDVCGKGFSHNSPLICHRRVHTGEKPYKCEACGKGFTRNTDLHIHFRVHTGEKPYKCKECGKGFSQASNLQVHQNVHTGEKRFKCETCGKGFSQSSKLQTHQRVHTGEKPYRCDVCGKDFSYSSNLKLHQVIHTGEKPYKCEECGKGFSWRSNLHAHQRVHSGE 601 HSP 7 Score: 80.1073 bits (196), Expect = 9.343e-16 Identity = 62/175 (35.43%), Postives = 77/175 (44.00%), Query Frame = 2
Query: 1118 FRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYKCDICDKGFRV-------------------SSALKVHFRI---------------------------HTGEKPYKCIYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFTHTGE 1504
F S H +T T KP + ++ K S SN Q + GEKP+ C C +GF SS L+ H RI HTGEK Y+C C KGF +S+ L H RTHTGEKPY+C CGK FSQS++ + HQ HT E
Sbjct: 207 FMKKSPFHEHIKTDTEPKPCKGNEYGKIISDGSN----QKLPLGEKPHPCGECGRGFSYSPRLPLHPNVHTGEKCFSQSSHLRTHQRIHPGEKLNRCHESGDCFNKSSFHSYQSNHTGEKSYRCDSCGKGFSSSTGLIIHYRTHTGEKPYKCEECGKCFSQSSNFQCHQRVHTEE 377 The following BLAST results are available for this feature:
BLAST of TCONS_00063781 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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