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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063782 ID=TCONS_00063782|Name=TCONS_00063782|organism=Clytia hemisphaerica|type=transcript|length=1792bpRun BLAST on NCBI protein sequence of TCONS_00063782-protein >TCONS_00063782-protein ID=TCONS_00063782-protein|Name=TCONS_00063782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=597bp YNNRSRQKNMMEKILESSTNNEDLVTDKSTNEEVIIKIENEENNEEIPCFRun BLAST on NCBI transcript from alignment at scaffold_400:62429..72672+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063782 ID=TCONS_00063782|Name=TCONS_00063782|organism=Clytia hemisphaerica|type=transcript|length=10244bp|location=Sequence derived from alignment at scaffold_400:62429..72672+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_400:62429..72672+ >TCONS_00063782 ID=TCONS_00063782|Name=TCONS_00063782|organism=Clytia hemisphaerica|type=CDS|length=1791bp|location=Sequence derived from alignment at scaffold_400:62429..72672+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063782 vs. Swiss-Prot (Human)
Match: ZN160 (Zinc finger protein 160 OS=Homo sapiens GN=ZNF160 PE=2 SV=3) HSP 1 Score: 514.227 bits (1323), Expect = 2.528e-172 Identity = 275/525 (52.38%), Postives = 332/525 (63.24%), Query Frame = 2
Query: 272 HKVETHVESRKFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTCSSSSNLKKHLLTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTFSSSSNLKKHLLTHTGEKPFKCDICGKAFRDTSALKGHVRIHTGEKPYKCTYCEKVFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFAHTGERPFKSDLSDNRTFSCTYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYKCDICDKGFRVSSALKVHFRIHTGEKPYKCIYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFTHTGERP-----------LKSDLSDNRT-------FSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCSDCEKAFSSSSNLKVHVRIHTGEKPYKCTYCEKGFRTSSDLKSHTRTHTGEKP 1792
H+V H + + C C K FR +S L H R HTGEKPYKCN+C K SNL H L HTGEKP+KCN+C K + +S+L H H GEKP+KC+ CGKAF S+L +H IHTGE+PYKC C K FR +S L H R HTGEKPYKCN+C K FS SNL H + HTG KPFKC+ C K F S L H RIHTGEKPYKC C K F S L +H H+GEKPY+C CGK+F+Q + LR H+ H+GE+P+K C C K F +S L H R HTGEKPY+C+DC +AFS S+L HQ+IHTGEKPYKC C K FR +S L H RIHTGEKPYKC C K F S+L +H HTGEKPY+CN CGK F+Q++ L HQ THTGE+P ++S L+ ++ + C C K F ++ L H R HTGEKPY+C++C KAF S+L H+ IHTGEK YKC C K FR SS+L SH R HTGEKP
Sbjct: 303 HQV-IHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFRGHSNLTTHQLIHTGEKPFKCNECGKLFTQNSHLISHWRIHTGEKPYKCNECGKAFSVRSSLAIHQTIHTGEKPYKCNECGKVFRYNSYLGRHRRVHTGEKPYKCNECGKAFSMHSNLATHQVIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTHQAIHSGEKPYKCIECGKSFTQKSHLRSHRGIHSGEKPYK----------CNECGKVFAQTSQLARHWRVHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFSMHSNLTTHKVIHTGEKPYKCNQCGKVFTQNSHLANHQRTHTGEKPYRCNECGKAFSVRSSLTTHQAIHTGKKPYKCNECGKVFTQNAHLANHRRIHTGEKPYRCTECGKAFRVRSSLTTHMAIHTGEKRYKCNECGKVFRQSSNLASHHRMHTGEKP 816 HSP 2 Score: 430.639 bits (1106), Expect = 6.057e-140 Identity = 220/411 (53.53%), Postives = 268/411 (65.21%), Query Frame = 2
Query: 284 THVESRKFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTCSSSSNLKKHLLTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTFSSSSNLKKHLLTHTGEKPFKCDICGKAFRDTSALKGHVRIHTGEKPYKCTYCEKVFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFAHTGERPFKSDLSDNRTFSCTYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYKCDICDKGFRVSSALKVHFRIHTGEKPYKCIYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFTHTGERPLK 1516
H + + C C K FR +S L H R HTGEKPYKCN+C K S SNL H + HTG KP+KCN+C K + +S L H+ H GEKP+KC+ CGKAF S+L H IH+GE+PYKC C K F S L+ H H+GEKPYKCN+C K F+ +S L +H HTGEKP+KC+ CG+AF D S+L H IHTGEKPYKC C KVFR +S L +H R HTGEKPY+CN CGK FS ++L H+ HTGE+P+K C C K F +S L H RTHTGEKPY C++C KAFS S+L HQ+IHTG+KPYKC+ C K F ++ L H RIHTGEKPY+C C K FR S L +H HTGEK Y+CN CGK F QS++L H HTGE+P K
Sbjct: 418 IHTGEKPYKCNECGKVFRYNSYLGRHRRVHTGEKPYKCNECGKAFSMHSNLATHQVIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTHQAIHSGEKPYKCIECGKSFTQKSHLRSHRGIHSGEKPYKCNECGKVFAQTSQLARHWRVHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFSMHSNLTTHKVIHTGEKPYK----------CNQCGKVFTQNSHLANHQRTHTGEKPYRCNECGKAFSVRSSLTTHQAIHTGKKPYKCNECGKVFTQNAHLANHRRIHTGEKPYRCTECGKAFRVRSSLTTHMAIHTGEKRYKCNECGKVFRQSSNLASHHRMHTGEKPYK 818 HSP 3 Score: 333.569 bits (854), Expect = 4.503e-103 Identity = 170/335 (50.75%), Postives = 209/335 (62.39%), Query Frame = 2
Query: 260 QEADHKVETHVESRKFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTCSSSSNLKKHLLTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTFSSSSNLKKHLLTHTGEKPFKCDICGKAFRDTSALKGHVRIHTGEKPYKCTYCEKVFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFAHTGERPFKSDLSDNRTFSCTYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYK 1264
Q A+H+ H + + C C K F S L H H+GEKPYKC +C K+ + S+L+ H H+GEKPYKCN+C K + +S L +H H GEKP+KC+ CG+AF D S+L H IHTGE+PYKC C K FR +S L H R HTGEKPYKCN+C K FS SNL H + HTGEKP+KC+ CGK F S L H R HTGEKPY+C C K F S L +H HTG+KPY+CN CGK F+Q+ L H+ HTGE+P++ CT C K FR S L H HTGEK Y+C++C K F SSNL H +HTGEKPYK
Sbjct: 495 QLANHR-RIHTGEKPYKCNECGKAFSVRSSLTTHQAIHSGEKPYKCIECGKSFTQKSHLRSHRGIHSGEKPYKCNECGKVFAQTSQLARHWRVHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFSMHSNLTTHKVIHTGEKPYKCNQCGKVFTQNSHLANHQRTHTGEKPYRCNECGKAFSVRSSLTTHQAIHTGKKPYKCNECGKVFTQNAHLANHRRIHTGEKPYR----------CTECGKAFRVRSSLTTHMAIHTGEKRYKCNECGKVFRQSSNLASHHRMHTGEKPYK 818 HSP 4 Score: 247.669 bits (631), Expect = 2.623e-71 Identity = 124/248 (50.00%), Postives = 151/248 (60.89%), Query Frame = 2
Query: 239 SKIVGSPQEADHKVETHVESRKFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTCSSSSNLKKHLLTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTFSSSSNLKKHLLTHTGEKPFKCDICGKAFRDTSALKGHVRIHTGEKPYKCTYCEKVFRTSSDLKSHTRTHTGEKPYE 982
K+ + H + + C C + F S L H HTGEKPYKC++C K +S L H HTGEKPYKCN+C K S SNL H++ H GEKP+KC+ CGK F S L H R HTGE+PY+C C K F S L H HTG+KPYKCN+C K F+ +++L H HTGEKP++C CGKAFR S+L H+ IHTGEK YKC C KVFR SS+L SH R HTGEKPY+
Sbjct: 571 GKVFAQTSQLARHWRVHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFSMHSNLTTHKVIHTGEKPYKCNQCGKVFTQNSHLANHQRTHTGEKPYRCNECGKAFSVRSSLTTHQAIHTGKKPYKCNECGKVFTQNAHLANHRRIHTGEKPYRCTECGKAFRVRSSLTTHMAIHTGEKRYKCNECGKVFRQSSNLASHHRMHTGEKPYK 818 HSP 5 Score: 244.202 bits (622), Expect = 3.960e-70 Identity = 151/334 (45.21%), Postives = 190/334 (56.89%), Query Frame = 2
Query: 866 VRIHTGE-KPYKCTYCEKVFRTSS------DLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFAHTGERPFKSDLSDNRTFSCTYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYKCDICDKGFRVSSALKVHFRIHTGEKPYKCIYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFTHTGERP-----------LKSDLSDNRT-------FSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCSDCEKAFSSSSNLKVHVRIHTGEKPYKCTYCEKGFRTSSDLKSHTRTHTGEKP 1792
+++ GE K Y+C EK S + S +TH +K +E N FS RK A++ +P+K C C K F +S+L H R H+GEKPY+CS+C K F+ SNL HQ IHTGEKPYKC C K FR +S L H RIHTGEKPYKC C K FR S+L +H HTGEKP++CN CGK F+Q++ L H HTGE+P ++S L+ ++T + C C K FR +S L H R HTGEKPYKC++C KAFS SNL H IHTG KP+KC C K F +S L +H R HTGEKP
Sbjct: 192 LQLFQGEGKMYECNQVEKSTNNGSSVSPLQQIPSSVQTHRSKKYHELN----HFSLLTQRRK---ANSCGKPYK----------CNECGKAFTQNSNLTSHRRIHSGEKPYKCSECGKTFTVRSNLTIHQVIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFRGHSNLTTHQLIHTGEKPFKCNECGKLFTQNSHLISHWRIHTGEKPYKCNECGKAFSVRSSLAIHQTIHTGEKPYKCNECGKVFRYNSYLGRHRRVHTGEKPYKCNECGKAFSMHSNLATHQVIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKP 508 The following BLAST results are available for this feature:
BLAST of TCONS_00063782 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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