TCONS_00063784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063784
Unique NameTCONS_00063784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1057

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063784 ID=TCONS_00063784|Name=TCONS_00063784|organism=Clytia hemisphaerica|type=transcript|length=1057bp
attttcagccataacactgtctgactgtgaaaatttgtccaatcttgttc
aaatttacacaggaaatGTGTTTTAGTATCTTTTATTGAATTCCTACAGT
GGTATGTTTGGAAAGAATCTGTGTTGCCCTCGGAAAATCAAAaagaacgg
tcgccagccgcgatgaaattacaacaataagtccaaaaatgatcattttc
agccataacaatgtcttgaccgtcgtcgtcggacgagagagaatttaagg
ctcctaggccggagcaaaaatGTTTAATTATTTTGCTGATTCTAGACCAC
CTGTTGTTAAGTACCTTTGAGTAACTATAGTCAGACTATCCGAGatattt
ttaaagtctttttttttagcTCAACCAACCATGCCATTTGAAGATTGGAT
ATTCCAGCCTCGAGTTATCCtagtttatttaaaaaatatcccAAATTCAA
AAATAGTTGGCAGCCCACAAGAAGCTGATCACAAAGTTGAAATACATCTT
GAAAGTAGAAAATTCAGTTGCGTTTATTGTGAGAAAGGATTCAGAACATC
AAGTGATTTGAAATCGCACACTCGAACTCACACTGGTGAAAAACCTTACG
AGTGCAATGTTTGTGGCAAGAAATTCTCTCAATCAAACAGCTTGCGAAAA
CATCAATTTACCCATACTGGCGAGAGACGTTTAAAAAGTGACTTATCTGA
TAATAGAACATTCGGTTGCGCTTATTGTGAGAAAGGATTCAGGACATCAA
GTGATTTGAAAATACATACTCGTACTCACACTGGTGAAAAACCTTATGAA
TGCAGTGATTGTGAGAAAGCGTTTTCCTGCTCAAGCAACTTGAAGAAACA
TCAGTTGACTCACACTGGTGAAAAACCTTATGAATGCAGTGATTGTGAGA
AAGCGTTTTCCTGCTCAAGCAACTTGAAGAAACATCAGTTGACTCACACT
GGTGAAAAACCCTATAAATGTGATATTTGTGATAAGGGATTTCGTGTATC
GAGTACGTTAAAAGTGCATTTTAGAAAATCTTAGAATTGCCAACGAATAA
TAGTAAG
Run BLAST on NCBI

transcript from alignment at scaffold_400:69475..70531+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063784 ID=TCONS_00063784|Name=TCONS_00063784|organism=Clytia hemisphaerica|type=transcript|length=1057bp|location=Sequence derived from alignment at scaffold_400:69475..70531+ (Clytia hemisphaerica)
attttcagccataacactgtctgactgtgaaaatttgtccaatcttgttc aaatttacacaggaaatGTGTTTTAGTATCTTTTATTGAATTCCTACAGT GGTATGTTTGGAAAGAATCTGTGTTGCCCTCGGAAAATCAAAaagaacgg tcgccagccgcgatgaaattacaacaataagtccaaaaatgatcattttc agccataacaatgtcttgaccgtcgtcgtcggacgagagagaatttaagg ctcctaggccggagcaaaaatGTTTAATTATTTTGCTGATTCTAGACCAC CTGTTGTTAAGTACCTTTGAGTAACTATAGTCAGACTATCCGAGatattt ttaaagtctttttttttagcTCAACCAACCATGCCATTTGAAGATTGGAT ATTCCAGCCTCGAGTTATCCtagtttatttaaaaaatatcccAAATTCAA AAATAGTTGGCAGCCCACAAGAAGCTGATCACAAAGTTGAAATACATCTT GAAAGTAGAAAATTCAGTTGCGTTTATTGTGAGAAAGGATTCAGAACATC AAGTGATTTGAAATCGCACACTCGAACTCACACTGGTGAAAAACCTTACG AGTGCAATGTTTGTGGCAAGAAATTCTCTCAATCAAACAGCTTGCGAAAA CATCAATTTACCCATACTGGCGAGAGACGTTTAAAAAGTGACTTATCTGA TAATAGAACATTCGGTTGCGCTTATTGTGAGAAAGGATTCAGGACATCAA GTGATTTGAAAATACATACTCGTACTCACACTGGTGAAAAACCTTATGAA TGCAGTGATTGTGAGAAAGCGTTTTCCTGCTCAAGCAACTTGAAGAAACA TCAGTTGACTCACACTGGTGAAAAACCTTATGAATGCAGTGATTGTGAGA AAGCGTTTTCCTGCTCAAGCAACTTGAAGAAACATCAGTTGACTCACACT GGTGAAAAACCCTATAAATGTGATATTTGTGATAAGGGATTTCGTGTATC GAGTACGTTAAAAGTGCATTTTAGAAAATCTTAGAATTGCCAACGAATAA TAGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039991XLOC_039991Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063784-exon-scaffold_400-1491911889:69475..70531TCONS_00063784-exon-scaffold_400-1491911889:69475..70531Clytia hemisphaericaexon
TCONS_00063784-exon-scaffold_400-1510915933:69475..70531TCONS_00063784-exon-scaffold_400-1510915933:69475..70531Clytia hemisphaericaexon
TCONS_00063784-exon-scaffold_400-1575043694:69475..70531TCONS_00063784-exon-scaffold_400-1575043694:69475..70531Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_400supercontigscaffold_400:69475..70531 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.13575 2.75571 7.94261 8.25554 5.09871 3.33169 4.83412 4.74655 3.4172 3.47486 2.79673 2.90964 3.02265 2.29228 2.38102 3.51079 2.56938 3.54841 1.32689 1.90677 4.13091 3.1845 4.03511 4.51043 3.11438 5.15226 4.08405 3.87712 6.28516 4.62265
Blast
BLAST of TCONS_00063784 vs. Swiss-Prot (Human)
Match: ZN700 (Zinc finger protein 700 OS=Homo sapiens GN=ZNF700 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 5.597e-55
Identity = 97/174 (55.75%), Postives = 120/174 (68.97%), Query Frame = 3
Query:  507 RKFSCVYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKKFSQSNSLRKHQFTHTGERRLKSDLSDNRTFGCAYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQLTHTGEKPYECSDCEKAFSCSSNLKKHQLTHTGEKPYKCDICDKGFRVSSTLKVHFRK 1028
            R + C  CEKGF ++   ++H +THTGEKPYECN CGK F   NSLR H+ THTGE+           + C  C K FR++S L++H RTHTGEKPYEC  C KAFSC+SNL+KH  THTGEKPYEC  C KAF  +SNL+ H+ THTGEKPY+C  C+K F   S+ ++H RK
Sbjct:  506 RPYKCSICEKGFYSAKSFQTHEKTHTGEKPYECNQCGKAFRCCNSLRYHERTHTGEK----------PYECKQCGKAFRSASHLRMHERTHTGEKPYECKQCGKAFSCASNLRKHGRTHTGEKPYECKQCGKAFRSASNLQMHERTHTGEKPYECKECEKAFCKFSSFQIHERK 669          

HSP 2 Score: 174.096 bits (440), Expect = 2.906e-48
Identity = 93/202 (46.04%), Postives = 119/202 (58.91%), Query Frame = 3
Query:  492 IHLESRKFSCVYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKKFSQSNSLRKHQFTHTGER-----------RLKSDL-------------SDNRTFGCAYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQLTHTGEKPYECSDCEKAFSCSSNLKKHQLTHTGEKPYKCDICDKGFRVSSTLKVHFR 1025
            IH   + + C  C K FR++S L+ H  THTGEKPYEC  CGK F  ++ LR H  THTGE+           R    L             S  R + C+ CEKGF ++   + H +THTGEKPYEC+ C KAF C ++L+ H+ THTGEKPYEC  C KAF  +S+L+ H+ THTGEKPY+C  C K F  +S L+ H R
Sbjct:  411 IHTGEKPYECKQCGKAFRSASQLRVHGGTHTGEKPYECKECGKAFRSTSHLRVHGRTHTGEKPYECKECGKAFRYVKHLQIHERTEKHIRMPSGERPYKCSICEKGFYSAKSFQTHEKTHTGEKPYECNQCGKAFRCCNSLRYHERTHTGEKPYECKQCGKAFRSASHLRMHERTHTGEKPYECKQCGKAFSCASNLRKHGR 612          

HSP 3 Score: 165.236 bits (417), Expect = 3.547e-45
Identity = 86/178 (48.31%), Postives = 111/178 (62.36%), Query Frame = 3
Query:  492 IHLESRKFSCVYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKKFSQSNSLRKHQFTHTGERRLKSDLSDNRTFGCAYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQLTHTGEKPYECSDCEKAFSCSSNLKKHQLTHTGEKPYKCDICDKGFRVSSTLKVHFR 1025
             H   + + C  C K FR++S L+ H RTHTGEKPYEC  CGK FS +++LRKH  THTGE+           + C  C K FR++S+L++H RTHTGEKPYEC +CEKAF   S+ + H+  H GEKPYEC  C   F+ +  L+ H  TH GEK Y+C  C K F   S+L +H R
Sbjct:  557 THTGEKPYECKQCGKAFRSASHLRMHERTHTGEKPYECKQCGKAFSCASNLRKHGRTHTGEK----------PYECKQCGKAFRSASNLQMHERTHTGEKPYECKECEKAFCKFSSFQIHERKHRGEKPYECKHCGNGFTSAKILQIHARTHIGEKHYECKECGKAFNYFSSLHIHAR 724          

HSP 4 Score: 157.918 bits (398), Expect = 1.908e-42
Identity = 81/184 (44.02%), Postives = 114/184 (61.96%), Query Frame = 3
Query:  486 VEIHLESRKFSCVYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKKFSQSNSLRKHQFTHTGERRLKSDLSDNRTFGCAYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQLTHTGEKPYECSDCEKAFSCSSNLKKHQLTH------TGEKPYKCDICDKGFRVSSTLKVH 1019
            + ++   R + C  C KGF ++   ++H +THTGEK Y+C  CGK F+ S+S R H+  HTGE+           + C  C K FR++S L++H  THTGEKPYEC +C KAF  +S+L+ H  THTGEKPYEC +C KAF    +L+ H+ T       +GE+PYKC IC+KGF  + + + H
Sbjct:  353 IRMNSGERPYKCKICGKGFYSAKSFQTHEKTHTGEKRYKCKQCGKAFNLSSSFRYHERIHTGEK----------PYECKQCGKAFRSASQLRVHGGTHTGEKPYECKECGKAFRSTSHLRVHGRTHTGEKPYECKECGKAFRYVKHLQIHERTEKHIRMPSGERPYKCSICEKGFYSAKSFQTH 526          

HSP 5 Score: 155.606 bits (392), Expect = 9.646e-42
Identity = 87/205 (42.44%), Postives = 109/205 (53.17%), Query Frame = 3
Query:  495 HLESRKFSCVYCEKGFRTSSDLKSHTRTHTGEKPYECN----------------------------VCGKKFSQSNSLRKHQFTHTGERRLKSDLSDNRTFGCAYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQLTHTGEKPYECSDCEKAFSCSSNLKKHQLTHTGEKPYKCDICDKGFRVSSTLKVHFR 1025
            H+  + + C  C K F  +S L+ H RTH+G+KPYEC                             +CGK F  + S + H+ THTGE+R K          C  C K F  SS  + H R HTGEKPYEC  C KAF  +S L+ H  THTGEKPYEC +C KAF  +S+L+ H  THTGEKPY+C  C K FR    L++H R
Sbjct:  300 HMGEKPYQCKECGKAFAYTSSLRRHERTHSGKKPYECKQYGEGLSYLISFQTHIRMNSGERPYKCKICGKGFYSAKSFQTHEKTHTGEKRYK----------CKQCGKAFNLSSSFRYHERIHTGEKPYECKQCGKAFRSASQLRVHGGTHTGEKPYECKECGKAFRSTSHLRVHGRTHTGEKPYECKECGKAFRYVKHLQIHER 494          

HSP 6 Score: 155.221 bits (391), Expect = 1.694e-41
Identity = 79/164 (48.17%), Postives = 104/164 (63.41%), Query Frame = 3
Query:  534 KGFRTSSDLKSHTRTHTGEKPYECNVCGKKFSQSNSLRKHQFTHTGERRLKSDLSDNRTFGCAYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQLTHTGEKPYECSDCEKAFSCSSNLKKHQLTHTGEKPYKCDICDKGFRVSSTLKVHFR 1025
            K FR    +++  R HTGEKPY C VCGK F   +S+R+H   H+G          + T+ C +C K F + S   IH RTHTGEKPYEC  C K+F+ S+ L+ H+ THTGEKPYECS C+KAF  SS+  +H+ +H GEKPY+C  C K F  +S+L+ H R
Sbjct:  173 KAFRYRPSIRTQERDHTGEKPYACKVCGKTFIFHSSIRRHMVMHSG----------DGTYKCKFCGKAFHSFSLYLIHERTHTGEKPYECKQCGKSFTYSATLQIHERTHTGEKPYECSKCDKAFHSSSSYHRHERSHMGEKPYQCKECGKAFAYTSSLRRHER 326          

HSP 7 Score: 144.821 bits (364), Expect = 6.308e-38
Identity = 74/176 (42.05%), Postives = 107/176 (60.80%), Query Frame = 3
Query:  492 IHLESRKFSCVYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKKFSQSNSLRKHQFTHTGERRLKSDLSDNRTFGCAYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQLTHTGEKPYECSDCEKAFSCSSNLKKHQLTHTGEKPYKCDICDKGFRVSSTLKVH 1019
            +H     + C +C K F + S    H RTHTGEKPYEC  CGK F+ S +L+ H+ THTGE+           + C+ C+K F +SS    H R+H GEKPY+C +C KAF+ +S+L++H+ TH+G+KPYEC    +  S   + + H   ++GE+PYKC IC KGF  + + + H
Sbjct:  215 MHSGDGTYKCKFCGKAFHSFSLYLIHERTHTGEKPYECKQCGKSFTYSATLQIHERTHTGEK----------PYECSKCDKAFHSSSSYHRHERSHMGEKPYQCKECGKAFAYTSSLRRHERTHSGKKPYECKQYGEGLSYLISFQTHIRMNSGERPYKCKICGKGFYSAKSFQTH 380          

HSP 8 Score: 141.354 bits (355), Expect = 1.124e-36
Identity = 71/176 (40.34%), Postives = 104/176 (59.09%), Query Frame = 3
Query:  492 IHLESRKFSCVYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKKFSQSNSLRKHQFTHTGERRLKSDLSDNRTFGCAYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQLTHTGEKPYECSDCEKAFSCSSNLKKHQLTHTGEKPYKCDICDKGFRVSSTLKVH 1019
             H   + + C  C+K F +SS    H R+H GEKPY+C  CGK F+ ++SLR+H+ TH+G++           + C    +G       + H R ++GE+PY+C  C K F  + + + H+ THTGEK Y+C  C KAF+ SS+ + H+  HTGEKPY+C  C K FR +S L+VH
Sbjct:  271 THTGEKPYECSKCDKAFHSSSSYHRHERSHMGEKPYQCKECGKAFAYTSSLRRHERTHSGKK----------PYECKQYGEGLSYLISFQTHIRMNSGERPYKCKICGKGFYSAKSFQTHEKTHTGEKRYKCKQCGKAFNLSSSFRYHERIHTGEKPYECKQCGKAFRSASQLRVH 436          

HSP 9 Score: 140.198 bits (352), Expect = 2.977e-36
Identity = 76/186 (40.86%), Postives = 109/186 (58.60%), Query Frame = 3
Query:  468 QEADHKVEIHLESRKFSCVYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKKFSQSNSLRKHQFTHTGERRLKSDLSDNRTFGCAYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQLTHTGEKPYECSDCEKAFSCSSNLKKHQLTHTGEKPYKCDICDKGFRVSSTLKVHFR 1025
            QE DH  E     + ++C  C K F   S ++ H   H+G+  Y+C  CGK F   +    H+ THTGE          + + C  C K F  S+ L+IH RTHTGEKPYECS C+KAF  SS+  +H+ +H GEKPY+C +C KAF+ +S+L++H+ TH+G+KPY+C    +G     + + H R
Sbjct:  184 QERDHTGE-----KPYACKVCGKTFIFHSSIRRHMVMHSGDGTYKCKFCGKAFHSFSLYLIHERTHTGE----------KPYECKQCGKSFTYSATLQIHERTHTGEKPYECSKCDKAFHSSSSYHRHERSHMGEKPYQCKECGKAFAYTSSLRRHERTHSGKKPYECKQYGEGLSYLISFQTHIR 354          

HSP 10 Score: 126.331 bits (316), Expect = 1.614e-31
Identity = 68/158 (43.04%), Postives = 90/158 (56.96%), Query Frame = 3
Query:  492 IHLESRKFSCVYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKKFSQSNSLRKHQFTHTGERRLKSDLSD------------------NRTFGCAYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQLTHTGEKPYECSDCEKAFS 911
             H   + + C  C K F  +S+L+ H RTHTGEKPYEC  CGK F  +++L+ H+ THTGE+  +    +                   + + C +C  GF ++  L+IH RTH GEK YEC +C KAF+  S+L  H  TH GEKPYEC DC KAFS
Sbjct:  585 THTGEKPYECKQCGKAFSCASNLRKHGRTHTGEKPYECKQCGKAFRSASNLQMHERTHTGEKPYECKECEKAFCKFSSFQIHERKHRGEKPYECKHCGNGFTSAKILQIHARTHIGEKHYECKECGKAFNYFSSLHIHARTHMGEKPYECKDCGKAFS 742          
The following BLAST results are available for this feature:
BLAST of TCONS_00063784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN7005.597e-5555.75Zinc finger protein 700 OS=Homo sapiens GN=ZNF700 ... [more]
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