Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063785 ID=TCONS_00063785|Name=TCONS_00063785|organism=Clytia hemisphaerica|type=transcript|length=1703bpRun BLAST on NCBI transcript from alignment at scaffold_400:71343..73045+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063785 ID=TCONS_00063785|Name=TCONS_00063785|organism=Clytia hemisphaerica|type=transcript|length=1703bp|location=Sequence derived from alignment at scaffold_400:71343..73045+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00063785 vs. Swiss-Prot (Human)
Match: ZN226 (Zinc finger protein 226 OS=Homo sapiens GN=ZNF226 PE=2 SV=2) HSP 1 Score: 449.129 bits (1154), Expect = 1.181e-147 Identity = 228/459 (49.67%), Postives = 288/459 (62.75%), Query Frame = 2 Query: 104 IHLENRTFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCSGCEKTCSSSSNLKKHQLTHLGEKPFKCDICDKAFRDTSALRVHVRIHTGEQPYKCGYCEKEFRTSSGLKIHTRTHTGEKHYECDVCEKTCSSSSNLKKHLLTHTGEKPFKCDICDKAFRDISALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNVCEKTCSSSSYLKKHLLTHTCEKPSKCDICGKAFRDTSALKGHARIHTGEKPYKCTYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKKFSQSNSLRKHQFTHTGERPLKSDL------------------SDNRTFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCSDCEKAFSSSSNLKVHVRIHTGEKPYKCTYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQLTHAGDKCSKSD 1426 +H+ + + C C KGF S L +H + HT EKPY C C + S +S+L+ HQ H GEKPFKCD C K+F S L+ H R+HTGE+PYKC C K F SS L IH R HTGEK Y+C+ C K S S+L+ H HTGEK + C +C K F S L+ H R+HTGE+PYKC C K FR +S ++H HTGEKPYKC +C K S SSYL+ H H+ EKP KC+ CG+ F +S L+ H IHTGEKPYKC C KGF +DLK H R HTGEKPY C CGK F Q+++L HQ H+GE+P K + + ++ + C C KGF+ S +L +H R HTGEKPYKC +C K FS +S+L++H +HTGEKPYKC C K F SS L+SH R HTGEKPY+C +CGK+FS ++L H H GDK KS+ Sbjct: 328 VHVIEKPYKCKQCGKGFSRRSALNVHCKVHTAEKPYNCEECGRAFSQASHLQDHQRLHTGEKPFKCDACGKSFSRNSHLQSHQRVHTGEKPYKCEECGKGFICSSNLYIHQRVHTGEKPYKCEECGKGFSRPSSLQAHQGVHTGEKSYICTVCGKGFTLSSNLQAHQRVHTGEKPYKCNECGKSFRRNSHYQVHLVVHTGEKPYKCEICGKGFSQSSYLQIHQKAHSIEKPFKCEECGQGFNQSSRLQIHQLIHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVHSGEKPFKCEECGKSFGRSAHLQAHQKVHTGDKPYKCDECGKGFKWSLNLDMHQRVHTGEKPYKCGECGKYFSQASSLQLHQSVHTGEKPYKCDVCGKVFSRSSQLQSHQRVHTGEKPYKCEICGKSFSWRSNLTVHHRIHVGDKSYKSN 786 HSP 2 Score: 406.371 bits (1043), Expect = 2.591e-131 Identity = 212/445 (47.64%), Postives = 272/445 (61.12%), Query Frame = 2 Query: 104 IHLENRTFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCSGCEKTCSSSSNLKKHQLTHLGEKPFKCDICDKAFRDTSALRVHVRIHTGEQPYKCGYCEKEFRTSSGLKIHTRTHTGEKHYECDVCEKTCSSSSNLKKHLLTHTGEKPFKCDICDKAFRDISALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNVCEKTCSSSSYLKKHLLTHTCEKPSKCDICGKAFRDTSALKGHARIHTGEKPYKCTYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKKFSQSNSLRKHQFTHTGERPLKSDL------------------SDNRTFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCSDCEKAFSSSSNLKVHVRIHTGEKPYKCTYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRK 1384 +H + ++C C + F +S L+ H R HTGEKP+KC C K+ S +S+L+ HQ H GEKP+KC+ C K F +S L +H R+HTGE+PYKC C K F S L+ H HTGEK Y C VC K + SSNL+ H HTGEKP+KC+ C K+FR S +VH+ +HTGE+PYKC C KGF SS L+IH + H+ EKP+KC C + + SS L+ H L HT EKP KC+ CGK F + LK H RIHTGEKPY C C K FR +S+L +H R H+GEKP++C CGK F +S L+ HQ HTG++P K D + + + C C K F +S L++H HTGEKPYKC C K FS SS L+ H R+HTGEKPYKC C K F S+L H R H G+K Y+ N GK +S +K Sbjct: 356 VHTAEKPYNCEECGRAFSQASHLQDHQRLHTGEKPFKCDACGKSFSRNSHLQSHQRVHTGEKPYKCEECGKGFICSSNLYIHQRVHTGEKPYKCEECGKGFSRPSSLQAHQGVHTGEKSYICTVCGKGFTLSSNLQAHQRVHTGEKPYKCNECGKSFRRNSHYQVHLVVHTGEKPYKCEICGKGFSQSSYLQIHQKAHSIEKPFKCEECGQGFNQSSRLQIHQLIHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVHSGEKPFKCEECGKSFGRSAHLQAHQKVHTGDKPYKCDECGKGFKWSLNLDMHQRVHTGEKPYKCGECGKYFSQASSLQLHQSVHTGEKPYKCDVCGKVFSRSSQLQSHQRVHTGEKPYKCEICGKSFSWRSNLTVHHRIHVGDKSYKSNRGGKNIRESTQEKK 800 HSP 3 Score: 355.525 bits (911), Expect = 9.085e-112 Identity = 197/484 (40.70%), Postives = 271/484 (55.99%), Query Frame = 2 Query: 20 PRVILVDLKNIPNSKIVGSPQEADHKVEIHLENRTFSCAYCEKGFRTSSDLKIHT--RTHTGEKPYKCSGCEKTCSSSSNLKKHQLTHLGEKPFKCDICDKAFRDTSALRVHVRIHTGEQPYKCGYCEKEFRTSSGLKIHTRTHTGEKHYECDVCEKTCSSSSNLKKHLLTHTGEKPFKCDICDKAFRDISALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNVCEKTCSSSSYLKKHLLTHTCEKPSKCDICGKAFRDTSALKGHARIHTGEKPYKCTYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKKFSQSNSLRKHQFTHTGERPLKSDL------------------SDNRTFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCSDCEKAFSSSSNLKVHVRIHTGEKPYKCTYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQLTHAGDK 1411 P ++ ++ + Q + +I ++N+ C+KG + H R H EK Y+ + EK + + H G+K ++C+ C K F D S+ +H ++ +GE+ C K F S L +H + H GEK +CD C K S ++L+ H H EKP+KC C K F SAL VH ++HT E+PY C C + F +S L+ H R HTGEKP+KC+ C K+ S +S+L+ H HT EKP KC+ CGK F +S L H R+HTGEKPYKC C KGF S L++H HTGEK Y C VCGK F+ S++L+ HQ HTGE+P K + + + + C C KGF SS L+IH + H+ EKP+KC +C + F+ SS L++H IHTGEKPYKC C KGF +DLK H R HTGEKPY C CGK F Q+++L HQ H+G+K Sbjct: 162 PEFPILRTQDSWRKTFLTESQRLNRDQQISIKNKL---CQCKKGVDPIGWISHHDGHRVHKSEKSYRPNDYEKDNMKILTFDHNSMIHTGQKSYQCNECKKPFSDLSSFDLHQQLQSGEKSLTCVERGKGFCYSPVLPVHQKVHVGEK-LKCDECGKEFSQGAHLQTHQKVHVIEKPYKCKQCGKGFSRRSALNVHCKVHTAEKPYNCEECGRAFSQASHLQDHQRLHTGEKPFKCDACGKSFSRNSHLQSHQRVHTGEKPYKCEECGKGFICSSNLYIHQRVHTGEKPYKCEECGKGFSRPSSLQAHQGVHTGEKSYICTVCGKGFTLSSNLQAHQRVHTGEKPYKCNECGKSFRRNSHYQVHLVVHTGEKPYKCEICGKGFSQSSYLQIHQKAHSIEKPFKCEECGQGFNQSSRLQIHQLIHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVHSGEK 641 HSP 4 Score: 215.698 bits (548), Expect = 1.907e-60 Identity = 109/223 (48.88%), Postives = 138/223 (61.88%), Query Frame = 2 Query: 104 IHLENRTFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCSGCEKTCSSSSNLKKHQLTHLGEKPFKCDICDKAFRDTSALRVHVRIHTGEQPYKCGYCEKEFRTSSGLKIHTRTHTGEKHYECDVCEKTCSSSSNLKKHLLTHTGEKPFKCDICDKAFRDISALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNVCEKTCSSSSYLKKHL 772 IH + + C C KGF +DLKIH R HTGEKPY C C K +SNL HQ H GEKPFKC+ C K+F ++ L+ H ++HTG++PYKC C K F+ S L +H R HTGEK Y+C C K S +S+L+ H HTGEKP+KCD+C K F S L+ H R+HTGE+PYKC C K F S+L +H R H G+K YK N K S+ KK + Sbjct: 580 IHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVHSGEKPFKCEECGKSFGRSAHLQAHQKVHTGDKPYKCDECGKGFKWSLNLDMHQRVHTGEKPYKCGECGKYFSQASSLQLHQSVHTGEKPYKCDVCGKVFSRSSQLQSHQRVHTGEKPYKCEICGKSFSWRSNLTVHHRIHVGDKSYKSNRGGKNIRESTQEKKSI 802 HSP 5 Score: 97.4413 bits (241), Expect = 4.425e-21 Identity = 50/110 (45.45%), Postives = 63/110 (57.27%), Query Frame = 2 Query: 89 DHKVEIHLENRTFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCSGCEKTCSSSSNLKKHQLTHLGEKPFKCDICDKAFRDTSALRVHVRIHTGEQPYKCGYCEKEFRTSS 418 D +H + + C C K F +S L++H HTGEKPYKC C K S SS L+ HQ H GEKP+KC+IC K+F S L VH RIH G++ YK K R S+ Sbjct: 687 DMHQRVHTGEKPYKCGECGKYFSQASSLQLHQSVHTGEKPYKCDVCGKVFSRSSQLQSHQRVHTGEKPYKCEICGKSFSWRSNLTVHHRIHVGDKSYKSNRGGKNIREST 796 The following BLAST results are available for this feature:
BLAST of TCONS_00063785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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