TCONS_00063785 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063785
Unique NameTCONS_00063785
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1703

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063785 ID=TCONS_00063785|Name=TCONS_00063785|organism=Clytia hemisphaerica|type=transcript|length=1703bp
TAAAGATTGGATGTTCCAACCTCGAGTTATCCtagttgatttaaaaaata
tccCAAATTCAAAAATAGTTGGTAGCCCACAAGAAGCTGATCACAAAGTT
GAAATACATCTTGAAAATAGAACATTCAGTTGTGCTTATTGCGAGAAAGG
ATTCAGGACATCAAGTGATTTGAAAATACATACTCGTACTCACACTGGTG
AAAAACCTTATAAATGCAGTGGTTGTGAGAAGACATGTTCTTCTTCAAGC
AATTTAAAGAAACATCAGTTGACCCACCTTGGTGAGAAACCTTTCAAATG
CGATATTTGTGACAAAGCTTTTCGTGATACTAGCGCGTTAAGAGTGCATG
TTAGAATCCATACAGGAGAACAGCCTTACAAATGTGGTTATTGCGAGAAA
GAATTCAGGACATCAAGTGGTTTGAAAATACACACTCGAACTCACACTGG
TGAAAAACATTATGAGTGTGATGTTTGTGAGAAGACATGTTCTTCTTCAA
GCAATTTAAAGAAACATCTATTGACCCACACTGGTGAGAAACCTTTCAAA
TGCGATATTTGTGACAAAGCTTTTCGTGATATTAGTGCGTTAAGGGTGCA
TGTTAGAATCCATACAGGAGAACAGCCTTACAAATGTGGTTATTGCGAGA
AAGGATTCAGGACATCAAGTGATTTGAAAATACACACTCGAACTCACACT
GGTGAAAAACCTTATAAATGCAATGTTTGTGAGAAAACATGTTCTTCTTC
AAGCTATTTAAAGAAACATCTATTGACTCACACTTGTGAGAAACCTTCCA
AATGCGATATTTGTGGCAAAGCTTTTCGTGATACTAGCGCGTTAAAAGGG
CATGCTAGAATCCATACAGGAGAGAAACCATACAAATGCACTTATTGTGA
GAAAGGATTCAGGACATCAAGTGATTTGAAATCGCACACTCGAACTCACA
CTGGTGAAAAACCTTACGAGTGCAATGTTTGTGGCAAGAAATTCTCTCAA
TCAAACAGCTTGAGAAAACATCAATTTACCCATACTGGCGAGAGACCTTT
AAAAAGTGACTTATCTGATAATAGAACATTCAGTTGCGCTTATTGCGAGA
AAGGATTCAGGACATCAAGTGATTTGAAAATACATACTCGCACTCACACT
GGTGAAAAACCTTATAAATGCAGTGATTGTGAGAAAGCGTTTTCTTCTTC
AAGCAATTTAAAAGTGCATGTTAGAATCCATACAGGAGAGAAACCATACA
AATGCACCTATTGTGAGAAAGGATTCAGAACATCAAGTGATTTGAAATCA
CACACTCGAACTCACACTGGTGAAAAACCTTACGAATGCAATGTTTGTGG
CAAGACATTTTCTCAATCAAACAGCTTGAGAAAACATCAATTGACTCACG
CAGGTGATAAATGCAGTAAATCTGATAATTTAGAAATGGAAAGGACTTCT
TTCGCTTGATAGCAATTATTGGGCCCTTGCGTTttatttccatacagggg
gtggacaaaATCATTGAGTTAGATGGCCATGAagtgaagttttttttaat
ttttaaattttttaaatttttttaacgtTGTTTAAATTTCAATAAGGCTT
CTTCTGGTAGAGTACTTGCTGCCATCtacgatggcccagaaggctcattA
TTGCTGCGCGCGAGAACATGACTGTGCGCGAGAAATATGCTGTGCGAGCG
AGA
Run BLAST on NCBI

transcript from alignment at scaffold_400:71343..73045+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063785 ID=TCONS_00063785|Name=TCONS_00063785|organism=Clytia hemisphaerica|type=transcript|length=1703bp|location=Sequence derived from alignment at scaffold_400:71343..73045+ (Clytia hemisphaerica)
TAAAGATTGGATGTTCCAACCTCGAGTTATCCtagttgatttaaaaaata tccCAAATTCAAAAATAGTTGGTAGCCCACAAGAAGCTGATCACAAAGTT GAAATACATCTTGAAAATAGAACATTCAGTTGTGCTTATTGCGAGAAAGG ATTCAGGACATCAAGTGATTTGAAAATACATACTCGTACTCACACTGGTG AAAAACCTTATAAATGCAGTGGTTGTGAGAAGACATGTTCTTCTTCAAGC AATTTAAAGAAACATCAGTTGACCCACCTTGGTGAGAAACCTTTCAAATG CGATATTTGTGACAAAGCTTTTCGTGATACTAGCGCGTTAAGAGTGCATG TTAGAATCCATACAGGAGAACAGCCTTACAAATGTGGTTATTGCGAGAAA GAATTCAGGACATCAAGTGGTTTGAAAATACACACTCGAACTCACACTGG TGAAAAACATTATGAGTGTGATGTTTGTGAGAAGACATGTTCTTCTTCAA GCAATTTAAAGAAACATCTATTGACCCACACTGGTGAGAAACCTTTCAAA TGCGATATTTGTGACAAAGCTTTTCGTGATATTAGTGCGTTAAGGGTGCA TGTTAGAATCCATACAGGAGAACAGCCTTACAAATGTGGTTATTGCGAGA AAGGATTCAGGACATCAAGTGATTTGAAAATACACACTCGAACTCACACT GGTGAAAAACCTTATAAATGCAATGTTTGTGAGAAAACATGTTCTTCTTC AAGCTATTTAAAGAAACATCTATTGACTCACACTTGTGAGAAACCTTCCA AATGCGATATTTGTGGCAAAGCTTTTCGTGATACTAGCGCGTTAAAAGGG CATGCTAGAATCCATACAGGAGAGAAACCATACAAATGCACTTATTGTGA GAAAGGATTCAGGACATCAAGTGATTTGAAATCGCACACTCGAACTCACA CTGGTGAAAAACCTTACGAGTGCAATGTTTGTGGCAAGAAATTCTCTCAA TCAAACAGCTTGAGAAAACATCAATTTACCCATACTGGCGAGAGACCTTT AAAAAGTGACTTATCTGATAATAGAACATTCAGTTGCGCTTATTGCGAGA AAGGATTCAGGACATCAAGTGATTTGAAAATACATACTCGCACTCACACT GGTGAAAAACCTTATAAATGCAGTGATTGTGAGAAAGCGTTTTCTTCTTC AAGCAATTTAAAAGTGCATGTTAGAATCCATACAGGAGAGAAACCATACA AATGCACCTATTGTGAGAAAGGATTCAGAACATCAAGTGATTTGAAATCA CACACTCGAACTCACACTGGTGAAAAACCTTACGAATGCAATGTTTGTGG CAAGACATTTTCTCAATCAAACAGCTTGAGAAAACATCAATTGACTCACG CAGGTGATAAATGCAGTAAATCTGATAATTTAGAAATGGAAAGGACTTCT TTCGCTTGATAGCAATTATTGGGCCCTTGCGTTttatttccatacagggg gtggacaaaATCATTGAGTTAGATGGCCATGAagtgaagttttttttaat ttttaaattttttaaatttttttaacgtTGTTTAAATTTCAATAAGGCTT CTTCTGGTAGAGTACTTGCTGCCATCtacgatggcccagaaggctcattA TTGCTGCGCGCGAGAACATGACTGTGCGCGAGAAATATGCTGTGCGAGCG AGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039991XLOC_039991Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063785-exon-scaffold_400-1491911889:71343..73045TCONS_00063785-exon-scaffold_400-1491911889:71343..73045Clytia hemisphaericaexon
TCONS_00063785-exon-scaffold_400-1510915933:71343..73045TCONS_00063785-exon-scaffold_400-1510915933:71343..73045Clytia hemisphaericaexon
TCONS_00063785-exon-scaffold_400-1575043694:71343..73045TCONS_00063785-exon-scaffold_400-1575043694:71343..73045Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_400supercontigscaffold_400:71343..73045 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00710924 0.575937 1.56527 2.57547 0.845396 0 0.949312 0.841059 0 1.02637 0 0.836395 0.553393 0.920375 0.429982 0.00983466 0.174836 0 0 0 0.266017 0.713634 2.26358 0.83166 1.09142 0.937208 0.693109 0.0908906 1.44099 1.92843
Blast
BLAST of TCONS_00063785 vs. Swiss-Prot (Human)
Match: ZN226 (Zinc finger protein 226 OS=Homo sapiens GN=ZNF226 PE=2 SV=2)

HSP 1 Score: 449.129 bits (1154), Expect = 1.181e-147
Identity = 228/459 (49.67%), Postives = 288/459 (62.75%), Query Frame = 2
Query:  104 IHLENRTFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCSGCEKTCSSSSNLKKHQLTHLGEKPFKCDICDKAFRDTSALRVHVRIHTGEQPYKCGYCEKEFRTSSGLKIHTRTHTGEKHYECDVCEKTCSSSSNLKKHLLTHTGEKPFKCDICDKAFRDISALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNVCEKTCSSSSYLKKHLLTHTCEKPSKCDICGKAFRDTSALKGHARIHTGEKPYKCTYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKKFSQSNSLRKHQFTHTGERPLKSDL------------------SDNRTFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCSDCEKAFSSSSNLKVHVRIHTGEKPYKCTYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQLTHAGDKCSKSD 1426
            +H+  + + C  C KGF   S L +H + HT EKPY C  C +  S +S+L+ HQ  H GEKPFKCD C K+F   S L+ H R+HTGE+PYKC  C K F  SS L IH R HTGEK Y+C+ C K  S  S+L+ H   HTGEK + C +C K F   S L+ H R+HTGE+PYKC  C K FR +S  ++H   HTGEKPYKC +C K  S SSYL+ H   H+ EKP KC+ CG+ F  +S L+ H  IHTGEKPYKC  C KGF   +DLK H R HTGEKPY C  CGK F Q+++L  HQ  H+GE+P K +                   + ++ + C  C KGF+ S +L +H R HTGEKPYKC +C K FS +S+L++H  +HTGEKPYKC  C K F  SS L+SH R HTGEKPY+C +CGK+FS  ++L  H   H GDK  KS+
Sbjct:  328 VHVIEKPYKCKQCGKGFSRRSALNVHCKVHTAEKPYNCEECGRAFSQASHLQDHQRLHTGEKPFKCDACGKSFSRNSHLQSHQRVHTGEKPYKCEECGKGFICSSNLYIHQRVHTGEKPYKCEECGKGFSRPSSLQAHQGVHTGEKSYICTVCGKGFTLSSNLQAHQRVHTGEKPYKCNECGKSFRRNSHYQVHLVVHTGEKPYKCEICGKGFSQSSYLQIHQKAHSIEKPFKCEECGQGFNQSSRLQIHQLIHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVHSGEKPFKCEECGKSFGRSAHLQAHQKVHTGDKPYKCDECGKGFKWSLNLDMHQRVHTGEKPYKCGECGKYFSQASSLQLHQSVHTGEKPYKCDVCGKVFSRSSQLQSHQRVHTGEKPYKCEICGKSFSWRSNLTVHHRIHVGDKSYKSN 786          

HSP 2 Score: 406.371 bits (1043), Expect = 2.591e-131
Identity = 212/445 (47.64%), Postives = 272/445 (61.12%), Query Frame = 2
Query:  104 IHLENRTFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCSGCEKTCSSSSNLKKHQLTHLGEKPFKCDICDKAFRDTSALRVHVRIHTGEQPYKCGYCEKEFRTSSGLKIHTRTHTGEKHYECDVCEKTCSSSSNLKKHLLTHTGEKPFKCDICDKAFRDISALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNVCEKTCSSSSYLKKHLLTHTCEKPSKCDICGKAFRDTSALKGHARIHTGEKPYKCTYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKKFSQSNSLRKHQFTHTGERPLKSDL------------------SDNRTFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCSDCEKAFSSSSNLKVHVRIHTGEKPYKCTYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRK 1384
            +H   + ++C  C + F  +S L+ H R HTGEKP+KC  C K+ S +S+L+ HQ  H GEKP+KC+ C K F  +S L +H R+HTGE+PYKC  C K F   S L+ H   HTGEK Y C VC K  + SSNL+ H   HTGEKP+KC+ C K+FR  S  +VH+ +HTGE+PYKC  C KGF  SS L+IH + H+ EKP+KC  C +  + SS L+ H L HT EKP KC+ CGK F   + LK H RIHTGEKPY C  C K FR +S+L +H R H+GEKP++C  CGK F +S  L+ HQ  HTG++P K D                   +  + + C  C K F  +S L++H   HTGEKPYKC  C K FS SS L+ H R+HTGEKPYKC  C K F   S+L  H R H G+K Y+ N  GK   +S   +K
Sbjct:  356 VHTAEKPYNCEECGRAFSQASHLQDHQRLHTGEKPFKCDACGKSFSRNSHLQSHQRVHTGEKPYKCEECGKGFICSSNLYIHQRVHTGEKPYKCEECGKGFSRPSSLQAHQGVHTGEKSYICTVCGKGFTLSSNLQAHQRVHTGEKPYKCNECGKSFRRNSHYQVHLVVHTGEKPYKCEICGKGFSQSSYLQIHQKAHSIEKPFKCEECGQGFNQSSRLQIHQLIHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVHSGEKPFKCEECGKSFGRSAHLQAHQKVHTGDKPYKCDECGKGFKWSLNLDMHQRVHTGEKPYKCGECGKYFSQASSLQLHQSVHTGEKPYKCDVCGKVFSRSSQLQSHQRVHTGEKPYKCEICGKSFSWRSNLTVHHRIHVGDKSYKSNRGGKNIRESTQEKK 800          

HSP 3 Score: 355.525 bits (911), Expect = 9.085e-112
Identity = 197/484 (40.70%), Postives = 271/484 (55.99%), Query Frame = 2
Query:   20 PRVILVDLKNIPNSKIVGSPQEADHKVEIHLENRTFSCAYCEKGFRTSSDLKIHT--RTHTGEKPYKCSGCEKTCSSSSNLKKHQLTHLGEKPFKCDICDKAFRDTSALRVHVRIHTGEQPYKCGYCEKEFRTSSGLKIHTRTHTGEKHYECDVCEKTCSSSSNLKKHLLTHTGEKPFKCDICDKAFRDISALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNVCEKTCSSSSYLKKHLLTHTCEKPSKCDICGKAFRDTSALKGHARIHTGEKPYKCTYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKKFSQSNSLRKHQFTHTGERPLKSDL------------------SDNRTFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCSDCEKAFSSSSNLKVHVRIHTGEKPYKCTYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQLTHAGDK 1411
            P   ++  ++      +   Q  +   +I ++N+      C+KG      +  H   R H  EK Y+ +  EK          + + H G+K ++C+ C K F D S+  +H ++ +GE+   C    K F  S  L +H + H GEK  +CD C K  S  ++L+ H   H  EKP+KC  C K F   SAL VH ++HT E+PY C  C + F  +S L+ H R HTGEKP+KC+ C K+ S +S+L+ H   HT EKP KC+ CGK F  +S L  H R+HTGEKPYKC  C KGF   S L++H   HTGEK Y C VCGK F+ S++L+ HQ  HTGE+P K +                   +  + + C  C KGF  SS L+IH + H+ EKP+KC +C + F+ SS L++H  IHTGEKPYKC  C KGF   +DLK H R HTGEKPY C  CGK F Q+++L  HQ  H+G+K
Sbjct:  162 PEFPILRTQDSWRKTFLTESQRLNRDQQISIKNKL---CQCKKGVDPIGWISHHDGHRVHKSEKSYRPNDYEKDNMKILTFDHNSMIHTGQKSYQCNECKKPFSDLSSFDLHQQLQSGEKSLTCVERGKGFCYSPVLPVHQKVHVGEK-LKCDECGKEFSQGAHLQTHQKVHVIEKPYKCKQCGKGFSRRSALNVHCKVHTAEKPYNCEECGRAFSQASHLQDHQRLHTGEKPFKCDACGKSFSRNSHLQSHQRVHTGEKPYKCEECGKGFICSSNLYIHQRVHTGEKPYKCEECGKGFSRPSSLQAHQGVHTGEKSYICTVCGKGFTLSSNLQAHQRVHTGEKPYKCNECGKSFRRNSHYQVHLVVHTGEKPYKCEICGKGFSQSSYLQIHQKAHSIEKPFKCEECGQGFNQSSRLQIHQLIHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVHSGEK 641          

HSP 4 Score: 215.698 bits (548), Expect = 1.907e-60
Identity = 109/223 (48.88%), Postives = 138/223 (61.88%), Query Frame = 2
Query:  104 IHLENRTFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCSGCEKTCSSSSNLKKHQLTHLGEKPFKCDICDKAFRDTSALRVHVRIHTGEQPYKCGYCEKEFRTSSGLKIHTRTHTGEKHYECDVCEKTCSSSSNLKKHLLTHTGEKPFKCDICDKAFRDISALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNVCEKTCSSSSYLKKHL 772
            IH   + + C  C KGF   +DLKIH R HTGEKPY C  C K    +SNL  HQ  H GEKPFKC+ C K+F  ++ L+ H ++HTG++PYKC  C K F+ S  L +H R HTGEK Y+C  C K  S +S+L+ H   HTGEKP+KCD+C K F   S L+ H R+HTGE+PYKC  C K F   S+L +H R H G+K YK N   K    S+  KK +
Sbjct:  580 IHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVHSGEKPFKCEECGKSFGRSAHLQAHQKVHTGDKPYKCDECGKGFKWSLNLDMHQRVHTGEKPYKCGECGKYFSQASSLQLHQSVHTGEKPYKCDVCGKVFSRSSQLQSHQRVHTGEKPYKCEICGKSFSWRSNLTVHHRIHVGDKSYKSNRGGKNIRESTQEKKSI 802          

HSP 5 Score: 97.4413 bits (241), Expect = 4.425e-21
Identity = 50/110 (45.45%), Postives = 63/110 (57.27%), Query Frame = 2
Query:   89 DHKVEIHLENRTFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCSGCEKTCSSSSNLKKHQLTHLGEKPFKCDICDKAFRDTSALRVHVRIHTGEQPYKCGYCEKEFRTSS 418
            D    +H   + + C  C K F  +S L++H   HTGEKPYKC  C K  S SS L+ HQ  H GEKP+KC+IC K+F   S L VH RIH G++ YK     K  R S+
Sbjct:  687 DMHQRVHTGEKPYKCGECGKYFSQASSLQLHQSVHTGEKPYKCDVCGKVFSRSSQLQSHQRVHTGEKPYKCEICGKSFSWRSNLTVHHRIHVGDKSYKSNRGGKNIREST 796          
The following BLAST results are available for this feature:
BLAST of TCONS_00063785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2261.181e-14749.67Zinc finger protein 226 OS=Homo sapiens GN=ZNF226 ... [more]
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