|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063933 ID=TCONS_00063933|Name=TCONS_00063933|organism=Clytia hemisphaerica|type=transcript|length=5190bpRun BLAST on NCBI protein sequence of TCONS_00063933-protein >TCONS_00063933-protein ID=TCONS_00063933-protein|Name=TCONS_00063933-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1129bp MDPLQVPETLVLSQSGGDASAMDDTHGALQGSLNSNDHNLADNNIMLHVPRun BLAST on NCBI transcript from alignment at scaffold_404:379909..399154- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063933 ID=TCONS_00063933|Name=TCONS_00063933|organism=Clytia hemisphaerica|type=transcript|length=19246bp|location=Sequence derived from alignment at scaffold_404:379909..399154- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_404:379909..399154- >TCONS_00063933 ID=TCONS_00063933|Name=TCONS_00063933|organism=Clytia hemisphaerica|type=CDS|length=3390bp|location=Sequence derived from alignment at scaffold_404:379909..399154- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063933 vs. Swiss-Prot (Human)
Match: LMBL2 (Lethal(3)malignant brain tumor-like protein 2 OS=Homo sapiens GN=L3MBTL2 PE=1 SV=1) HSP 1 Score: 295.434 bits (755), Expect = 1.611e-84 Identity = 199/612 (32.52%), Postives = 293/612 (47.88%), Query Frame = 3
Query: 759 EEHETSQTTENSFHENNQFLFDGTPRNEDEIKKEPGGEITCEFCGALGHEDEFYQKSKKFCTLECSKRFAALXXXXXXXXXXVQLNSTNNRSNKRKIHRPGVKLKKLKIDTNEATPSIESGLQQVSLDDINAENKYDEISLIDNHYNEDSYTGSWSDKDFDWNNYLAQYQEKPASERLFKHTFKAPSLNEAHKGMKIEVNNDRSDLNKETDVYYWLSTVIDVDNNMMLLRYSAFDDD-SNDFWIDIRSKHIHPVGWCYKNRKPLVPPTEIKSKDVKDWQQTIFTELSGSRTLSADFLDRVQKGHYNKFECGSKVEVCDKRQNFSMCVATIVKIVGDRLCLRYDGLEQGVDVDHWSHFLSSDIHPVGWSQLVGLALSPPFGWEKSETDWNEFIAENLHESNDAPQEC----FVPESMGSAPSDAGTFEVGMKLEALNPLNPLSLTVASVVRTLEYNNIVVNIDMTET-----FFICHASSGNIFPVGYAKQHKCFLTPPR--EQKQFDWNKYLTQTESIAAPSSLFLHLKKRVTPFEVGTKVEAVDLREPSLICPATVVSIHGSLLRIHFDGWDSTYDQFVSHDTLDIFPVHWCEKNSHPFQPPGSLNPDTVL 2558
E+ E + + H L GTPR+ D EP CE CG +G + F+ K+K+FC+ + K +L + +H+ K ++ T + G D + L FDW +L + K A FKH + KGMK+EV N + L YW+++VI +LLRY F++D S+DFW ++ + +HP+GWC N K LVPP I +K DW+ + L GSRTL DF ++ + F G ++EV DK Q +A + ++G RL L Y+ + D D W H S IHPVGWS+ VG + +E ++ H C ++ + + + ++ G FE GMKLEA++PLN ++ VA+V + L +++ +D + +F HASS IFP + +++ LTPP+ E + F+W YL +T+S AAPS LF ++ F+VG K+EAVDL EP LIC ATV + LL IHFDGWDS YDQ+V ++ DI+PV WCE + QPP + P T L
Sbjct: 57 EDREAGELPTSPLH----LLSPGTPRSLDGSGSEPA---VCEMCGIVGTREAFFSKTKRFCS---VSCSRSYSSNSKKASILARLQGKPPTKKAKVLHKAAWSAKIGAFLHSQGTGQLADG----------TPTGQDALVL-----------------GFDWGKFLKDHSYKAAPVSCFKHVPLYDQWEDVMKGMKVEVLNSDAVLPSRV---YWIASVIQTAGYRVLLRYEGFENDASHDFWCNLGTVDVHPIGWCAINSKILVPPRTIHAK-FTDWKGYLMKRLVGSRTLPVDFHIKMVESMKYPFRQGMRLEVVDKSQVSRTRMAVVDTVIGGRLRLLYE--DGDSDDDFWCHMWSPLIHPVGWSRRVGHGIK-----------MSERRSDMAHHPTFRKIYCDAVPYLFKKVRAVYTEGGWFEEGMKLEAIDPLNLGNICVATVCKVLLDGYLMICVDGGPSTDGLDWFCYHASSHAIFPATFCQKNDIELTPPKGYEAQTFNWENYLEKTKSKAAPSRLF-NMDCPNHGFKVGMKLEAVDLMEPRLICVATVKRVVHRLLSIHFDGWDSEYDQWVDCESPDIYPVGWCELTGYQLQPPVAAEPATPL 613 The following BLAST results are available for this feature:
BLAST of TCONS_00063933 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.