TCONS_00064022 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064022
Unique NameTCONS_00064022
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2019

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064022 ID=TCONS_00064022|Name=TCONS_00064022|organism=Clytia hemisphaerica|type=transcript|length=2019bp
attccgcggaatagctattccggccggaacagctattccggttccggcat
tccgGCATTCCGCCGTTCTGCGTTTTGTCTCTACCCGCAGAAAGTTGCAG
CAACCAaatttttaaaccaaaatacTAATActactttataaaaacaaatg
agAAGATTATTTGCTTATTGCAAGTAAaagctgaaaagaaaaaaCACAAG
AGATGAACAAATGGAACAGATCACAAAGTCCAAGTGCTATACCACGTTTA
TTACAAAAAAGGCCTTTGTTTGGTTCTGCAGATAGTATTCCACGCACTCC
TTCACCCGTTAAAACTAAACCTGGAAGCAAACTGCCCACTCCTActataa
gaaaaacaaactcAACACCAAATCTGAAGAGAGGAGAAATTTTGAGTGAT
AGTGCTTCATCAAACAAGGAAACATTTCAGATCAAGAGTGTATCTATAGA
TGATTCAAGGAATAACTCTATTTCCACAGAACCTTTCGAAGAGCTTCTTA
TGCCTAGCTCTCACAAGTTGATTCATGATTCAGATTCAGATGATGACAAA
AGAGAGTCTTTTTTATCTGGTGGACATGGTGAAGACAACTGGTTGCTTTC
AGATGGTGGGAATAAGATACAACCTCTTTTGGAAATGGATGTTTTAGTGG
AAGAATCAGATTTTGAGGATGATGATTTACCTGAGGATGCTGAAACTGGT
GTAAATAGAATTGAAAATGGTGCTTGTTCTTCCAATAGAGACTTTGTAAT
TCATCAAAATGTTGCTGGACCATTAAAAAATCATGATGTGGCTACTATAG
AAATTCAACATAATCGTGCCCAAATTGAGTCATGCCTTGATGACCAAGAA
CCCTTGTCTCGAGAAACTGCTGTCCCTACAGAAAGTGGCTTTCTTCAACA
AGCTACAAAAGAAAATGTAATGTACATCACTGAAAATCTCATTAAGCGTA
TCACAAAAGTCGCTGatttaaattcaatcaaaaaactAAATCTATGTGTT
GCAAAACAGTGGAAAAGGAAAATTCagTTTATAGAAAATTTGGAACCATT
GAGGAACTTAGAAATGTTGAAATTATCCAATAACTTCAtcactaaaattc
aaaaactcaaCACACTGGTCAATTTGCGCTACCTGGATCTATCAATGAAT
CAAATCACAAATGTTGAAGGATTGGAAACACTTGTGAATTTGGAATCTCT
GTATCTTGATTATAATCATATTGAATCTTTCCCTAATTGGTTTGGCAAGA
AAATGAGGAGCTTGCAAACTTTTTCAATCTCAAATAATAGATTCACAAAG
tTGGATGAATTTGTGAAGCTAGCATCCTTGTCTAACTTGAGTCTTCTTGA
TATTCGGGACAACCCATGCTGTCGCCTGAACCACTTGGAAAGTTTTGTTG
TTTTCCACTTGCGATCATTGAATACAATAAATGGAAAAGTCATTTGCATT
GAAATGAGGAATATGGCTGATCAGCGATTCTCTAAAGATGAAATTGATTG
CCGTGAGAAACAAATCAATGAACTTCAAAAGCAAAATACAGCATTactaa
aagaaaatagaaagCTAACTGAAAGTCAAAACCAAACCGGTAATATTGAG
AAAAAGCTTATTGATAAAGTTAAAACTTTGAAGAAATCTCTGCACACTTG
TACTCAAGACTTGGAGACCAAAAATGGACTGCTGGAAAGTAAAACAACGG
AGTTGAACAAAGCATGTGAAAAGCAATACAAATTGGAACAAGAGCTAGCT
TTTTACAAATTGGACGCAAAATTTGATGAGATGTGGCAAATGCCTCCTAG
AGAAGGCAATGAAATGgaGACTGAAGAGTTCAACGAACACGCTTACATTG
GGAAAGCCAGATACAAGAAAGCCAGCTTACCCAAAGACAACATCATCTTG
AATGAAGAGCAAAGCATGAGATTCTCATCTTTTCTTTCTCGTCTCAATCC
AACACAATTtcgagaaaatgaaaatatttgcaCAGCTCTAGAGCAAGCCT
TGGATATTGATCTCAGTAA
Run BLAST on NCBI

protein sequence of TCONS_00064022-protein

>TCONS_00064022-protein ID=TCONS_00064022-protein|Name=TCONS_00064022-protein|organism=Clytia hemisphaerica|type=polypeptide|length=605bp
MNKWNRSQSPSAIPRLLQKRPLFGSADSIPRTPSPVKTKPGSKLPTPTIR
KTNSTPNLKRGEILSDSASSNKETFQIKSVSIDDSRNNSISTEPFEELLM
PSSHKLIHDSDSDDDKRESFLSGGHGEDNWLLSDGGNKIQPLLEMDVLVE
ESDFEDDDLPEDAETGVNRIENGACSSNRDFVIHQNVAGPLKNHDVATIE
IQHNRAQIESCLDDQEPLSRETAVPTESGFLQQATKENVMYITENLIKRI
TKVADLNSIKKLNLCVAKQWKRKIQFIENLEPLRNLEMLKLSNNFITKIQ
KLNTLVNLRYLDLSMNQITNVEGLETLVNLESLYLDYNHIESFPNWFGKK
MRSLQTFSISNNRFTKLDEFVKLASLSNLSLLDIRDNPCCRLNHLESFVV
FHLRSLNTINGKVICIEMRNMADQRFSKDEIDCREKQINELQKQNTALLK
ENRKLTESQNQTGNIEKKLIDKVKTLKKSLHTCTQDLETKNGLLESKTTE
LNKACEKQYKLEQELAFYKLDAKFDEMWQMPPREGNEMETEEFNEHAYIG
KARYKKASLPKDNIILNEEQSMRFSSFLSRLNPTQFRENENICTALEQAL
DIDLS
Run BLAST on NCBI

transcript from alignment at scaffold_407:61178..72212+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064022 ID=TCONS_00064022|Name=TCONS_00064022|organism=Clytia hemisphaerica|type=transcript|length=11035bp|location=Sequence derived from alignment at scaffold_407:61178..72212+ (Clytia hemisphaerica)
attccgcggaatagctattccggccggaacagctattccggttccggcat
tccgGCATTCCGCCGTTCTGCGTTTTGTCTCTACCCGCAGAAAGTTGCAG
CAACCAaatttttaaaccaaaatacTAATActactttataaaaacaaatg
agAAGATTATTTGCTTATTGCAAGTAAaagctgaaaagaaaaaagtaagt
atGTGTGATTTTAGGATGTAGACACAAAGCAATTAGCAATGGTACAAGAA
ACAGAAAGGATGTTAAAGAAAGTCCAGAAAGTCTTGCCagaccagacgtc
cgcgctcgataggatcgatcatcgaaacggctcgatgacggatcgatatg
atgatcgatggattacttaaggatccggataggagatcgatagaggatcg
atactcaagattttttaaagcttatgattagttatcatcgatcttttatc
gatctttatCGACCCTATCCActctcgatttacgatcgataacaaatcga
ttaacgatcgatgacgaatcgatatactcgattgaaatactagctcgata
atggatcaacgaaggatcgatactcaagactttttaatggctgaatcttc
catcgatctcgcTCCTATCCGGATCATTGTTATTGTTaattaagtaatcc
atcgaccacatatcgatccgtcatcgagccgttccgatgatcgatcctat
cgagcgcggacgtctgggcCAGAAGCAGCCCAGCCTGCCAGCCAACCAGC
CCATTTTCCCGAAATTaaatctgtttcccttttccaggagagagcttttt
ttgaaaaatgaggaGACAAATCTGATTTTCTAGGAATAACAAATACAGTA
GTGAGTGTTTCTTCGTTCCAGACTACATTGcctgggctattccattttta
aaccattcaggggtattgacgaacttttccaggggatctgagccttgatt
ttccaaggggtttttgttcatttttaagattttccaagggggatattaaa
ggtttccagggggttctctcCTCCTAAAGTGACATTAATAGTTATTTTTc
aggccctttttcacaaaatttcactttccactCCAGGGATGTCGACccct
aatttccaggggatagtttgttatccaaaatttccaggaggggggtagtg
aaaaaagttcgtcaatacccatgtacaatttttttttgtaatagcCCATT
Cgcatgtgttccactacagatttttttcataccgggtgtgccacaaataa
gttaccctctttgatttgatattgtaggtagtagaaaagagatttttcaa
agattatttcggaatcattcagaggaaagcctaacttaaaatttggtgta
ttactttttaattttacttcattggttcaaaagaaTTGGTTCTGAAAGAG
CataaaattctgagcaaaaaaatgtattacaacaactctctgactgaAAC
ACCCAAAGAAATACAGTCGCtcgaagttcaaaaacataccgatgtcagta
cgatcaagacaagatttgacgtcaaacagcgtcaaatcacagtagagctg
acgcagttagttggtcttaaagcggctgtattttctttgtgtgttttagt
cagaaagttgttgtaatacaattttctgctcagaatttcatgctctatca
aatggtatcaatcattttcgtttattttgacttttgaaaataagctattt
tcctaccccttattttcccttgcagttttgcctatggcgtcactattttg
gNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTATCAAtaattttcg
tttattttgacttttgaaaataagctattttcctaccccttattttccct
tgcagttttgcctatggcgtcactattttggtcctAAAAAGTTTTCCCAG
GCCTAATctgcgtcctccctctcaaaaatatcttgtaatctACTGTTCTT
tgaaatagactaaaaatggttaggtcgtaaaaaagatgtcacagaacccc
aggcttggccccctactagaAACAACTGTTATTAAAATTACCAAGAACAC
AGTCaattaaagtaaattttagaaacactcttgaaagctACAAAGGAGGT
GAGTATGAAAAGAATCCTTTAATCGtaaaaattttagcgagactaatttt
agcgttttagcaagttttccctattttcgctaaaataaatctcgctaaaa
cacgccgaatcaccagatcgctaaaatttatccacgttCTGGTTacattg
ccttgatacatttttatcaataggaagggtttcagtgcaaagaaatgcta
gaaaacgaactcaatcaataatgtaatatgagtattcgctaaaatttatc
cacgcaaaattttttgcaaaaaaaatcaagattttcctgactcgctaata
tacgctaaaattagtctcgctaaaatttctacgattaaagtaggcAAAGT
AAGAGACAAGGGTTTTAAGATTATTCAGGGGGGGTATcaagtcagtgtac
tggcccatagctggtggggtggtgtattttttaggttaaattgagttagt
acagtgtactaaaagggaggtcctctgagaaaaatacaatgaaaagttag
tacagtgtactaaaagggaggtcctctgagaaaaatacaatgaaaagtta
gtacagtgtactaaaagggaggtcctctgagaaaaatacaatgaaaaagt
tagtacagtgtactaaaagggtggtcctctgagaaaaatacaatgaaaaa
gttagtacagtgtactaaaagggtggtcctctgagaaaaatacaatgaaa
aagttagtacactgtactaaaaagggtggtgttctgactgttctgaattg
atacacactgagaagttagtacattgtactaatttcagtggtaaaaacac
acaaacccAGTGAATTCCTATGTATAGTTGCCCTAATTTGCCAGGACCAA
GCTGGTCTGAGACCTTCAAGTCAAGGCTGGTTAAGCTATACAAATTGGTA
CACTGATTTTCTCTAAAAGTTTCCTGTTTacttgattggatttgtttcag
agtcgcagcatgcgcaagtggagaccgacctTAAGTCCAATCTTGTTTAC
GTTTTCTTTAAGGCCCTATCTACATTATGGCAACAACAAGAATTTGAATG
TGTAAACGTTCGAATCGAAGCTTTTAagttatataaaaacaaatctgctc
tattgttttatgttttttagtAACCTTGTTGAATTGatgttaattgaaaa
aaatctgtatataaaGTGAAATCACCGGGGGGAGAgggtgaaaacgaccg
tacgttaggccaaaaatcaggtctctaaaatcggtcCCTAACATTGCagg
aaaattttggctgaaaatcgacccttatagtgtaatgtttcgaaattttt
tacccttttcagggcaaaattttttgaaatttctcaaattttacctcaaa
atttggtatttcataaaattttacacccttacagtgcactttttcccact
tgctcacaaatcaaccctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtatt
tgattgactttgctttgtctgtttcattgtttcagtgtTTGTACTATATA
AGGATTCAAgtattttaatattcaaatctttccttttatataattttgtg
cttttcttagaaaaatgcttcaaaaccttTGTATATGGTGGCAATCTGGC
CAAGAAGAAATTAGAACAGTGCACTATTAGGGGTGGTTTGNACCAACGCT
TATTCGCAATAACCAACGCTTATTCGCAGCCCTGAATGCCATCCTCAAAA
TTGATAGACAAGGCCTCCTAGTAGACCTAAATTTCAAACATTcatccatt
tttttcaaaatttacacATTCAAGCGTAAATGGTTGGCACTTTAGATGTA
GCATTCTTGATAGAAAATCTTTTGATTGTCAAATGTTGACAGTGTcgtta
ttaattttttgttatatctGACAAACTGATGTTGTGAGTGcatgcacttt
atagttttcattcaatttgaagagtcatattctggttttccaTGTTCCCT
GATGTTCGAAAACAGCTTGGTAAATTTTGAGTGTTTTTATTTAGATGAAA
GTAAGCTCTAAATGTGCTCTTAATACACCTTGAGAGCTGACGCTAGGCTA
GACTTGTTACTAAAAATGACATGCATGATGTCTGAGAAGGCCCCCCTTGT
TCACATAAGTATAATTTGTTATCCTTtgattgttcatttttttcaatttg
aattagCACAAGAGATGAACAAATGGAACAGATCACAAAGTCCAAGTGCT
ATACCACGTTTATTACAAAAAAGGCCTTTGTTTGGTTCTGCAGATAGTAT
TCCACGCACTCCTTCACCCGTTAAAACTAAACCTGGAAGCAAACTGCCCA
CTCCTActataagaaaaacaaactcAACACCAAATCTGAAGAGAGGAGAA
ATTTTGAGTGATAGTGCTTCATCAAACAAGGAAACATTTCAGATCAAGAG
TGTATCTATAGATGATTCAAGGAATAACTCTATTTCCACAGAACCTTTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTG
GCAATCTGGCCAAGAAGAAATTAGaacagtgcactataaggggtggtttc
taaacttatctgatcgaaaaaacagctagtacagtgtactaaaagagTGG
TATCAAAAATCCGGTCATGGAGaagtcagtacagtgtactgaaagggtgg
TGATAAAAATCTAGTTGTGGAAAAAANGTAGCATTCTTGATAGAAAATCT
TTTGATTGTCAAATGTTGACAGTGTcgttattaattttttgttatatctG
ACAAACTGATGTTGTGAGTGcatgcactttatagttttcattcaatttga
agagtcatattctggttttccaTGTTCCCTGATGTTCGAAAACAGCTTGG
TAAATTTTGAGTGTTTTTATTTAGATGAAAGTAAGCTCTAAATGTGCTCT
TAATACACCTTGAGAGCTGACGCTAGGCTAGACTTGTTACTAAAAATGAC
ATGCATGATGCCTGAGAAGGCCCCCCTTGTTCACATAAGTATAATTTGTT
ATCCTTtgattgttcatttttttcaatttgaatcaGCACAAGAGATGAAC
AAATGGAACAGATCACAAAGTCCAAGTGCTATACCACGTTTATTACAAAA
AAGGCCTTTGTTTGGTTCTGCAGATAGTATTCCACGCACTCCTTCACCCG
TTAAAACTAAACCTGGAAGCAAACTGCCCACTCCTActataagaaaaaca
aactcAACACCAAATCTGAAGAGAGGAGAAATTTTGAGTGATAGTGCTTC
ATCAAACAAGGAAACATTTCAGATCAAGAGTGTATCTATAGATGATTCAA
GGAATAACTCTATTTCCACAGAACCTTTCGAAGAGCTTCTTATGCCTAGC
TCTCACAAGTTGATTCATGATTCAGATTCAGATGATGACAAAAGAGAGTC
TTTTTTATCTGGTGGACATGGTGAAGACAACTGGTTGCTTTCAGATGGTG
GGAATAAGATACAACCTCTTTTGGAAATGGATGTTTTAGTGGAAGAATCA
GATTTTGAGGATGATGATTTACCTGAGGATGCTGAAACTGGTGTAAATAG
AATTGAAAATGGTGCTTGTTCTTCCAATAGAGACTTTGTAATTCATCAAA
ATGTTGCTGGACCATTAAAAAATCATGATGTGGCTACTATAGAAATTCAA
CATAATCGTGCCCAAATTGAGTCATGCCTTGATGACCAAGAACCCTGTAA
GCAATCTTCACCTTTAGTATCAATAACATGGTAATAATGGCTCTTTTCAG
GTCTTTTATTTTGTAATTGTCCGCCTGGTTTCTCAAAGTTTCAGTCAAGT
TGGTCCTTACAGACAAGTTGCTTTGGTCCTTAGTTTTCCTGATGTCAAAC
AGCTACATTACATATATATATGTAAAAGAGTTAATGTTACAGTACTGACA
ACTTTTTCGACCTGTTTTCtaattttatcttttattttacaGTGTCTCGA
GAAACTGCTGTCCCTACAGAAAGTGGCTTTCTTCAACAAGCTACAAAAGA
AAATGTAATGTACATCACTGAAAATCTCATTAAGCGTATCACAAAAGTCG
CTGatttaaattcaatcaaaaaactAAATCTATGTGTTGCAAAACAGTGG
AAAAGGAAAATTCaggtatttcttgattttttggtaattattttttaaga
aaactaacATTTTAAATcatcttttttcgtttttcatgtAATTAATACAT
GAACCATTAGTTTGACTTGAATGGTCATTacttatttaaatttttgaaat
tttgtcattttttgattAATAATTTTGTCTTCTACTGCAGTTTATAGAAA
ATTTGGAACCATTGAGGAACTTAGAAATGTTGAAATTATCCAATAACTTC
AtcactaaaattcaaaaactcaaCACACTGGTCAATTTGCGCTACCTGGA
TCTATCAATGAATCAAATCACAAATGTTGAAGGATTGGAAACACTTGTGA
ATTTGGAATCTCTGTATCTTGATTATAATCATATTGAATCTTTCCCTAAT
TGGTTTGGCAAGAAAATGAGGAGCTTGCAAACTTTTTCAATCTCAAATAA
TAGATTCACAAAGGTATATTATCATACAGCATCTGGATTATAAATGAATA
GTGCTCTTTTCACAACCTACGTTACCGACCGCTACTACAAACTATGTATT
GAACATAAATAATTTCCTTTCTTttctcaaaacaaacaaacaaacaaact
tttaaacaatatttctattttccacattttagtTGGATGAATTTGTGAAG
CTAGCATCCTTGTCTAACTTGAGTCTTCTTGATATTCGGGACAACCCATG
CTGTCGCCTGAACCACTTGGAAAGTTTTGTTGTTTTCCACTTGCGATCAT
TGAATACAATAAATGGAAAAGTCATTTGCATTGAAATGAGGAATATGGCT
GATCAGCGATTCTCTAAAGGTGAAATAATGGAAAACTTTAGCCAATATTG
CTTAATCTTAAAATGAAGTAAACTAGATTCAATAACCTCAAGAATTAATT
AATAACATAACATCCTTTCAAGGTTCTGTTCGATTTTTCCTTGGAGATCC
TATTTTCATCATACTCTATCTTTTTTGTATCCTTAGATGAAATTGATTGC
CGTGAGAAACAAATCAATGAACTTCAAAAGCAAAATACAGCATTactaaa
agaaaatagaaagCTAACTGAAAGTCAAAACCAAACCGGTAATATTGAGA
AAAAGCTTATTGATAAAGTTAAAACTTTGAAGAAATCTCTGCACACTTGT
ACTCAAGACTTGGAGACCAAAAATGGACTGGTACGTGAAAAAGTTTTAAA
CTTGCCCAAAATCTCAGGAAATTGCATTGAACTTTTACCCCTTTAATCAc
ataaattcaaaaagtcaaaacattgtTTTGTATGGTTTGAATGAAGATAA
TTTGAATGGAGGTAATTTGAATGAAGTAGTTACAATCTTTCCTCAAAAGT
GCTTTTTCTCAAATCTCAATTTCAGCTGGAAAGTAAAACAACGGAGTTGA
ACAAAGCATGTGAAAAGCAATACAAATTGGAACAAGAGCTAGCTTTTTAC
AAATTGGACGCAAAATTTGATGAGATGTGGCAAATGCCTCCTAGAGAAGG
CAATGAAATGGTAAGTAAAAAGGTCAactctaaaaatgttttttcctggC
CCATTGGGTGACAAAAAAAGTCATGCGGGCAGCCGGGATAACTTTATTTC
CAGTCCTTTTCATGATCTTTTTAAAAcatgaaagaaaatgaaaacacaaa
gGAGAATATTATAAAGAAATACAAGTAAGTttccaaaaaaggaaaaaaca
atCGTTAAAATTCCAATTCATGTACTGTaaacatcatttttttaaacaat
ttgttaacattttcagattagaaattttcatttcaatgtttttaaactGA
TAATGGTGGTCGGATGACACCGAAAcgtttttaataaatttttgtcttta
tgaaaataaaatgaagtcgcttctgtgtttgaaatttttattgaaatcat
TCAGGAGGAGCAACCAATTTGAAAACATCATTGTAAACGCATTAACATTT
TGCAGAAAATATTAAAtgggaaaattggaaaaaaagaaaagttttaaaaa
attggacTTGGTGCTTATGAAGAAGGTTTTTACCCAGCAGAAAAGATTTT
CACCAGGCTGGTAGAcggaaaaagaaatatttttaggtttcaGCCAATTT
ACAAACTTTATAGTTCTTACTACAAATCAATTCAGAGTAttcttttgcca
tttttttgtaaaaaaacttttaattccAACTGCTTTATCACCAACAAGCA
ATCAAcacaaactttttaatttttttttgcaggaGACTGAAGAGTTCAAC
GAACACGCTTACATTGGGAAAGCCAGATACAAGAAAGCCAGCTTACCCAA
AGACAACATCATCTTGAATGAAGAGCAAAGCATGAGATTCTCATCTTTTC
TTTCTCGTCTCAATCCAACACAATTtcgagaaaatgaaaatatttgcaCA
GCTCTAGAGCAAGCCTTGGATATTGATCTCAGTAA

Coding sequence (CDS) from alignment at scaffold_407:61178..72212+

>TCONS_00064022 ID=TCONS_00064022|Name=TCONS_00064022|organism=Clytia hemisphaerica|type=CDS|length=1815bp|location=Sequence derived from alignment at scaffold_407:61178..72212+ (Clytia hemisphaerica)
ATGAACAAATGGAACAGATCACAAAGTCCAAGTGCTATACCACGTTTATT
ACAAAAAAGGCCTTTGTTTGGTTCTGCAGATAGTATTCCACGCACTCCTT
CACCCGTTAAAACTAAACCTGGAAGCAAACTGCCCACTCCTActataaga
aaaacaaactcAACACCAAATCTGAAGAGAGGAGAAATTTTGAGTGATAG
TGCTTCATCAAACAAGGAAACATTTCAGATCAAGAGTGTATCTATAGATG
ATTCAAGGAATAACTCTATTTCCACAGAACCTTTCGAAGAGCTTCTTATG
CCTAGCTCTCACAAGTTGATTCATGATTCAGATTCAGATGATGACAAAAG
AGAGTCTTTTTTATCTGGTGGACATGGTGAAGACAACTGGTTGCTTTCAG
ATGGTGGGAATAAGATACAACCTCTTTTGGAAATGGATGTTTTAGTGGAA
GAATCAGATTTTGAGGATGATGATTTACCTGAGGATGCTGAAACTGGTGT
AAATAGAATTGAAAATGGTGCTTGTTCTTCCAATAGAGACTTTGTAATTC
ATCAAAATGTTGCTGGACCATTAAAAAATCATGATGTGGCTACTATAGAA
ATTCAACATAATCGTGCCCAAATTGAGTCATGCCTTGATGACCAAGAACC
CTTGTCTCGAGAAACTGCTGTCCCTACAGAAAGTGGCTTTCTTCAACAAG
CTACAAAAGAAAATGTAATGTACATCACTGAAAATCTCATTAAGCGTATC
ACAAAAGTCGCTGatttaaattcaatcaaaaaactAAATCTATGTGTTGC
AAAACAGTGGAAAAGGAAAATTCagTTTATAGAAAATTTGGAACCATTGA
GGAACTTAGAAATGTTGAAATTATCCAATAACTTCAtcactaaaattcaa
aaactcaaCACACTGGTCAATTTGCGCTACCTGGATCTATCAATGAATCA
AATCACAAATGTTGAAGGATTGGAAACACTTGTGAATTTGGAATCTCTGT
ATCTTGATTATAATCATATTGAATCTTTCCCTAATTGGTTTGGCAAGAAA
ATGAGGAGCTTGCAAACTTTTTCAATCTCAAATAATAGATTCACAAAGtT
GGATGAATTTGTGAAGCTAGCATCCTTGTCTAACTTGAGTCTTCTTGATA
TTCGGGACAACCCATGCTGTCGCCTGAACCACTTGGAAAGTTTTGTTGTT
TTCCACTTGCGATCATTGAATACAATAAATGGAAAAGTCATTTGCATTGA
AATGAGGAATATGGCTGATCAGCGATTCTCTAAAGATGAAATTGATTGCC
GTGAGAAACAAATCAATGAACTTCAAAAGCAAAATACAGCATTactaaaa
gaaaatagaaagCTAACTGAAAGTCAAAACCAAACCGGTAATATTGAGAA
AAAGCTTATTGATAAAGTTAAAACTTTGAAGAAATCTCTGCACACTTGTA
CTCAAGACTTGGAGACCAAAAATGGACTGCTGGAAAGTAAAACAACGGAG
TTGAACAAAGCATGTGAAAAGCAATACAAATTGGAACAAGAGCTAGCTTT
TTACAAATTGGACGCAAAATTTGATGAGATGTGGCAAATGCCTCCTAGAG
AAGGCAATGAAATGgaGACTGAAGAGTTCAACGAACACGCTTACATTGGG
AAAGCCAGATACAAGAAAGCCAGCTTACCCAAAGACAACATCATCTTGAA
TGAAGAGCAAAGCATGAGATTCTCATCTTTTCTTTCTCGTCTCAATCCAA
CACAATTtcgagaaaatgaaaatatttgcaCAGCTCTAGAGCAAGCCTTG
GATATTGATCTCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040146XLOC_040146Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064022-proteinTCONS_00064022-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064022-exon-scaffold_407-1491911889:61178..61371TCONS_00064022-exon-scaffold_407-1491911889:61178..61371Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1510915933:61178..61371TCONS_00064022-exon-scaffold_407-1510915933:61178..61371Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1575043694:61178..61371TCONS_00064022-exon-scaffold_407-1575043694:61178..61371Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1491911889:68714..69373TCONS_00064022-exon-scaffold_407-1491911889:68714..69373Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1510915933:68714..69373TCONS_00064022-exon-scaffold_407-1510915933:68714..69373Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1575043694:68714..69373TCONS_00064022-exon-scaffold_407-1575043694:68714..69373Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1491911889:69620..69792TCONS_00064022-exon-scaffold_407-1491911889:69620..69792Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1510915933:69620..69792TCONS_00064022-exon-scaffold_407-1510915933:69620..69792Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1575043694:69620..69792TCONS_00064022-exon-scaffold_407-1575043694:69620..69792Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1491911889:69968..70240TCONS_00064022-exon-scaffold_407-1491911889:69968..70240Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1510915933:69968..70240TCONS_00064022-exon-scaffold_407-1510915933:69968..70240Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1575043694:69968..70240TCONS_00064022-exon-scaffold_407-1575043694:69968..70240Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1491911889:70410..70596TCONS_00064022-exon-scaffold_407-1491911889:70410..70596Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1510915933:70410..70596TCONS_00064022-exon-scaffold_407-1510915933:70410..70596Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1575043694:70410..70596TCONS_00064022-exon-scaffold_407-1575043694:70410..70596Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1491911889:70764..70957TCONS_00064022-exon-scaffold_407-1491911889:70764..70957Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1510915933:70764..70957TCONS_00064022-exon-scaffold_407-1510915933:70764..70957Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1575043694:70764..70957TCONS_00064022-exon-scaffold_407-1575043694:70764..70957Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1491911889:71153..71287TCONS_00064022-exon-scaffold_407-1491911889:71153..71287Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1510915933:71153..71287TCONS_00064022-exon-scaffold_407-1510915933:71153..71287Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1575043694:71153..71287TCONS_00064022-exon-scaffold_407-1575043694:71153..71287Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1491911889:72010..72212TCONS_00064022-exon-scaffold_407-1491911889:72010..72212Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1510915933:72010..72212TCONS_00064022-exon-scaffold_407-1510915933:72010..72212Clytia hemisphaericaexon
TCONS_00064022-exon-scaffold_407-1575043694:72010..72212TCONS_00064022-exon-scaffold_407-1575043694:72010..72212Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_407supercontigscaffold_407:61178..72212 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.86572	1.91189	0.978322	0.65299	17.451	12.439	12.2725	10.9939	6.83326	6.48777	6.76361	5.065	5.03579	4.62697	3.68405	3.9424	3.23139	3.71998	1.90158	2.98903	3.18605	3.66243	1.799	2.65619	18.923	19.2139	1.12945	0.487622	1.47938	1.19829
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00064022 vs. Swiss-Prot (Human)
Match: CNTRL (Centriolin OS=Homo sapiens GN=CNTRL PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.525e-60
Identity = 135/341 (39.59%), Postives = 204/341 (59.82%), Query Frame = 2 
Query:  914 NVMYITENLIKRITKVADLNSIKKLNLCVAKQWKRKIQFIENLEPLRNLEMLKLSNNFITKIQKLNTLVNLRYLDLSMNQITNVEGLETLVNLESLYLDYNHIESFPNWFGKKMRSLQTFSISNNRFTKLDEFVKLASLSNLSLLDIRDNPCCRLNHLESFVVFHLRSLNTINGKVICIEMRNMADQRFSKDEIDCREKQINELQKQNTALL-KENRKLTESQNQTGNIEXXXXXXXXXXXXSLHTCTQDLETKNGLLESKTTELNKACEKQYKLEQELAFYKLDAKFDEMWQMPPRXXXXXXXXXXXXHAYIGKARYKKASLPKDNIILNEEQSMRFSSF 1933
             V YITE LIK++TK  +L  IK LNL ++K   +K ++IENLE    LE+L LS N I KI+KL+ L+ LR L+LS N+I+ +EG+E + NL+ L L  N IE  P W GKK++SL+  ++  N+ + L +  KL  L +L  L + +NP   L H   F +FHLRSL ++ G+ +  + R  A +RFS +E++  E+ + +   +   L  K+ R L E +NQ   + K L ++    K+S      DL TKN LL+ KT EL +AC+KQY+LEQELAFYK+DAKF+ +   P       +  + +   YIGK+RYK+     ++ I++  Q+++    
Sbjct:   79 GVRYITEALIKKLTKQDNLALIKSLNLSLSKDGGKKFKYIENLEKCVKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNKISKIEGIENMCNLQKLNLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSLQDISKLKPLQDLISLILVENPVVTLPHYLQFTIFHLRSLESLEGQPVTTQDRQEAFERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQ-DKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQYELEQELAFYKIDAKFEPLNYYPSEYAEIDKAPDES--PYIGKSRYKRNMFATESYIIDSAQAVQIKKM 416
The following BLAST results are available for this feature:
BLAST of TCONS_00064022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNTRL2.525e-6039.59Centriolin OS=Homo sapiens GN=CNTRL PE=1 SV=2[more]
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