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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064110 ID=TCONS_00064110|Name=TCONS_00064110|organism=Clytia hemisphaerica|type=transcript|length=1413bp
TGATCCAACTAAGTGTGATCATTGAATCACTCCAACAAAAATAGCCATCA
ATAAACATTTCTCTCGATAACGACgaataaacattttcaattaaagttga
taaaataaaatttccaagTAACTCTTTTCGTGGAATCGTAAACTCTTGCT
TTTTCAATGGAACGACACGCGATTTCGAcgtaacaaaattaataataacA
TTCTCACATTTGGTAACTCCTTTAATATATACACAACAGCCATAAGCTAA
ATCAGCAGCATCGGAGAAACCGTGTAAATAAATCTTCTCAATCGGGTCAT
CAATCGAGCAACCAGTAAAATAATATCTATTCACAACAATAGCTGGAACA
TTCATAAAACTTTGAACAACTTTCAACCACTTTGTACAAATTTCGTTTGG
GAGTGTTTCATCCCAGCCAACATTCAATAAACAAATTTCACGAAAAAGCA
ATTTCAAGCCAATAGTCAATGGCTGAACGAAACCAATTGGATCGTAGATT
CCagcaataattttcaaaatttctctctTTGTTGGCATTTCTTCTTTGAC
GTTCTCGAATAGTCCTTTGACGGACAAAATCAATTTGTCGTCAAGTTCAT
TCCAGACAATACCAAGAACTTTACTcgtttgtaaatcttcgtttttgtat
tctactttttctttcttatttatttcatttttcttatttatttctttttc
ttctttctcattTATTATTTCTCTTAGTTCTTGACTGTTCGTGCGCCACT
TTCTCAGAGGAAAGCTCGCTTCCATAAATCtcaatttgaatttcttgtaC
AAATCGAGACCATTTTCAACACTACTAGTTCCGGTGTTTAAATCATCAAC
GTAGAAATGATCACGGACCTTTCTACTGAACTCAGGATCAAGTTGCTCAT
ATTTCTTGGCAACTTTTCTCACACACCCATTTAGCAAAAATTGCGAACTT
GTAACACCCCAGATAATACGAGTAAAACGAAATGTTTGAATTTCTGGAAA
TTTAGCATAAGGATTTTTGTACcataaaaatctcataaaatcACGATGTG
CAGGATCAATTTCAATCTGGGTGTATGCTTTTTCAATATCAGCACACATA
GCAATGGGATGTGAACGAAAATTTAATAACGAGTCAAATAACAAAGGGTT
TAAGCACGGACCCTTGTACAAAACATCATTAAGACTGACGCCGTCACGAT
ACTTAGCACTTGCATCAAACACGACCCTGACTTTGGTTGTAATTTTGTCA
GGTCTCACCACTTCTCGATGTGGTAGATACGTCACCATGCCGGGCTCGCC
TGGGTCATCGTCAGGTACGGGCTCGATCACCCCTTTACTCAATtgatcat
caaaaacagcacTATACTGTTCAAAAAGTTCTGGATTCTTTCCAATACGA
TTGTGTAACGAGT Run BLAST on NCBI transcript from alignment at scaffold_408:67872..70131+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064110 ID=TCONS_00064110|Name=TCONS_00064110|organism=Clytia hemisphaerica|type=transcript|length=2260bp|location=Sequence derived from alignment at scaffold_408:67872..70131+ (Clytia hemisphaerica)
TGATCCAACTAAGTGTGATCATTGAATCACTCCAACAAAAATAGCCATCA
ATAAACATTTCTCTCGATAACGACgaataaacattttcaattaaagttga
taaaataaaatttccaagTAACTCTTTTCGTGGAATCGTAAACTCTTGCT
TTTTCAATGGAACGACACGCGATTTCGAcgtaacaaaattaataataacA
TTCTCACATTTGGTAACTCCTTTAATATATACACAACAGCCATAAGCTAA
ATCAGCAGCATCGGAGAAACCGTGTAAATAAATCTTCTCAATCGGGTCAT
CAATCGAGCAACCAGTAAAATAATATCTATTCACAACAATAGCTGGAACA
TTCATAAAACTTTGAACAACTTTCAACCACTTTGTACAAATTTCGTTTGG
GAGTGTTTCATCCCAGCCAACATTCAATAAACAAATTTCACGAAAAAGCA
ATTTCAAGCCAATAGTCAATGGCTGAACGAAACCAATTGGATCGTAGATT
CCagcaataattttcaaaatttctctctTTGTTGGCATTTCTTCTTTGAC
GTTCTCGAATAGTCCTTTGACGGACAAAATCAATTTGTCGTCAAGTTCAT
TCCAGACAATACCAAGAACTTTACTATTTTGTAAatcggtttgtgtaatt
tacgatgcgcgatccaacgattcacgatgcacgatccatgcatgatttat
gtcgatttatgttaattattttaatcatgcacaaataagttttcataatg
ctagctacaaacatcatataacaataacgaaaaaaaattaaaaaaagaag
gggaaataatttatcataatcagaatgattaaaataacttatatcttctg
tgtagaaaaaccaaaaattgatagcgagagtttgtttttaaaatgaaaga
aaaagccttgaNNgtacgtttattatttttttaagaacagtgaataaggt
aaataaggaatcattggctacattacttttggcatgttcttataaaagcc
ttttaCCAACAGAATGACAACTGgtgttttcatttatttgattttttctc
ggtttgatgatcaagttaattcattttatttgatctttctcaaaaaaggt
gagtttatacACGCGCTAAACGTCTTCccctactttaccacaacattgta
gatttttgtttataaccctgtctcaatccaatgcatttggttggtttaat
cggagaaacgttttttttttaagaaagaaagcaaaaaagttacaatatat
tcaattcaaagCATGGGCATGTTTTGATTTGATTTGATTGTTGAGGTTAA
AATTTATACACGCATACTTTACATTGATTCTccaggaatacaaaagaagg
aattaaaatatgtgattactaaaacctataaatgcataattagaataatt
agcataatatatgcatggatcgtgcatcgcgcatcgtgaatcgttggatc
gtgcatcgtaaattacacaaaccgtttgtaaatcttcgtttttgtattct
actttttctttcttatttatttcatttttcttatttatttctttttcttc
tttctcattTATTATTTCTCTTAGTTCTTGACTGTTCGTGCGCCACTTTC
TCAGAGGAAAGCTCGCTTCCATAAATCtcaatttgaatttcttgtaCAAA
TCGAGACCATTTTCAACACTACTAGTTCCGGTGTTTAAATCATCAACGTA
GAAATGATCACGGACCTTTCTACTGAACTCAGGATCAAGTTGCTCATATT
TCTTGGCAACTTTTCTCACACACCCATTTAGCAAAAATTGCGAACTTGTA
ACACCCCAGATAATACGAGTAAAACGAAATGTTTGAATTTCTGGAAATTT
AGCATAAGGATTTTTGTACcataaaaatctcataaaatcACGATGTGCAG
GATCAATTTCAATCTGGGTGTATGCTTTTTCAATATCAGCACACATAGCA
ATGGGATGTGAACGAAAATTTAATAACGAGTCAAATAACAAAGGGTTTAA
GCACGGACCCTTGTACAAAACATCATTAAGACTGACGCCGTCACGATACT
TAGCACTTGCATCAAACACGACCCTGACTTTGGTTGTAATTTTGTCAGGT
CTCACCACTTCTCGATGTGGTAGATACGTCACCATGCCGGGCTCGCCTGG
GTCATCGTCAGGTACGGGCTCGATCACCCCTTTACTCAATtgatcatcaa
aaacagcacTATACTGTTCAAAAAGTTCTGGATTCTTTCCAATACGATTG
TGTAACGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064110-exon-scaffold_408-1491911889:67872..68496 | TCONS_00064110-exon-scaffold_408-1491911889:67872..68496 | Clytia hemisphaerica | exon |
| TCONS_00064110-exon-scaffold_408-1510915933:67872..68496 | TCONS_00064110-exon-scaffold_408-1510915933:67872..68496 | Clytia hemisphaerica | exon |
| TCONS_00064110-exon-scaffold_408-1575043694:67872..68496 | TCONS_00064110-exon-scaffold_408-1575043694:67872..68496 | Clytia hemisphaerica | exon |
| TCONS_00064110-exon-scaffold_408-1491911889:69344..70131 | TCONS_00064110-exon-scaffold_408-1491911889:69344..70131 | Clytia hemisphaerica | exon |
| TCONS_00064110-exon-scaffold_408-1510915933:69344..70131 | TCONS_00064110-exon-scaffold_408-1510915933:69344..70131 | Clytia hemisphaerica | exon |
| TCONS_00064110-exon-scaffold_408-1575043694:69344..70131 | TCONS_00064110-exon-scaffold_408-1575043694:69344..70131 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_408 | supercontig | scaffold_408:67872..70131 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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