TCONS_00064116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064116
Unique NameTCONS_00064116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length749

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064116 ID=TCONS_00064116|Name=TCONS_00064116|organism=Clytia hemisphaerica|type=transcript|length=749bp
aaaatccaggtttttagtgaggtgctctcTAAAACTTCAAGAACATCAGG
AGTTTTTCTGCATCTTCAGGGCTGACCGCGAACAGTGCAATGACGTCAGC
GTGATCTGCATCCGTCAGTGAGTGGAATAACCTGGACGAGGACATACGAA
ATCTTCCTTCAATCTCTCTTTTCGAAACCACGATACTCAGATTCTTAAAA
CCCAATGCCAATTCGGTTTTCAGACTTGATGACAATAGAGGTGTGGTTCT
ACTTAACCGTTTAAGGGTCGACTTCAGTCGTTTTCGGGAACATAAATTCA
AACACAATTTTGCAGACACAGTTGATCCTTTTTTGCAACTGTCGAAATAA
CTCTATCGAAACTACGAAGCATTTTCTGATGCGTTACTCTGATTTCTCCG
ATGATAGACATGTAATGTTTGACAGCCTTTTAGCTGAACAATTTGGGATT
TTGATGGTGACATAGAATGGATTGGAGACACAGTATGCTAGTGACAGAGA
GAGAGAGCGACAGTGGTAAAAGTGAAGAAGAGCCTAATGACGAGGAGTAT
GGAGAAGCAGAAAGGGATGTAGAATCTGATGACGAAGAAAGTGACGAAGA
AAACAATAATTgtgtagaaaaaagtttttaaataacTTCAAACATTCCTT
AATTTTTACATTACAGTATACATACgtaaattttaaattcatttttgtta
TTCACTACCAAGTTTTGGGTTTGagcattctggtctgtaaaatacacaa
Run BLAST on NCBI

transcript from alignment at scaffold_408:105540..107474-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064116 ID=TCONS_00064116|Name=TCONS_00064116|organism=Clytia hemisphaerica|type=transcript|length=1935bp|location=Sequence derived from alignment at scaffold_408:105540..107474- (Clytia hemisphaerica)
AAAATCCAGGTTTTTAGTGAGGTGCTCTCTAAAACTTCAAGAACATCAGG
AGTTTTTCTGCATCTTCAGGGCTGACCGCGAACAGTGCAATGACGTCAGC
GTGATCTGCATCCGTCAGGTGGGTTGCTGAATGACGTCTGCTTCGTGATC
TTTGAATAGTGAATCCAAATGAATAGCGCTTCGTCTCCTTGAAGGACCCC
AGCAGATATGTTGAATAGATCCGTATCAACATCGGGAGATCTCAAAATAA
CATTTCTGCCGTGGTAAAGTGTCATAATGGCGTCGACGATGGGATGAGGG
CTCCGTAGGCACAGCTTCACGATTTTTATCTCTGATATCTTCGAGGACTC
TTCTAACTGTAAGGAATTGACCAGTCGCAGATAGGTTTTTGCGGAAACCG
TTTTGGTTTTTACGCAGCACCTACTCGATTTTTGGCTGAATACGGTTTAG
CAGCATTGCGTTGTACATTTTTGCAGCGATATGCGTATAGTTCTTGGCGA
GTCCAAGGTCACTCTGTTTTTAGGTAGGTTTAAGTAGGCTGCAACCTTTT
TTCTAAATTTCTATTTCATGTTGGTGGTACAATGAATTACTGCATTACAG
AAGAATGTCAAGTTTCCCGTTTTCCAAACCTCAGGGAGGATGTCATCGAG
ACCTACGGCTTTTCTGTTCTTGAATTTATTTAAAACATTTTCGAGCTCGT
CATTTACTTATATCAAACTCATGGTCGATGATAATTTCTGTGGATTGATC
GTTTACTTTCGGTTCTTGGCAAGTCCTAAAAATACAATGACTTTGCCGTC
GAGGCCCTTATCCCGCTTGGAGAAGGATGGGACCTAGCTGACGAAACCAA
AGAGTTGTTGGAAAATTAGATATGCAAGATCTTTTTCTTCAGTCTTGAGC
AAACTGAAGAAAGACCACATGTAAGACCACATCTTGATTATGGAGATGTA
GTATACGATCGTCCCGATAATTCCACTTGCTCTGAAAAAAATCGAATCAA
TTCAATACAATGCCAGTCTTGAGATAACTGGATGTTTTAGGGGGACATCT
AGAGAAAAAATCTATCTTGAGCTAGGTCTTGAAAGCCTAGCGGACAGGCG
ACTAAGCCGCAGACTCTTCTATAAGATAATTAAAGGCTTTGCGCCTACTT
ATCTTTCTAATATCCTTCCTCCCAAGAGGGGGGAGAAGGTTAATGAAGAT
GAAGATGAGGATGCTGGTGGAAGACGTAGGATTAGACCTCCTTTTGTGCC
ACCCTTTTGTCGAACCGAACGATATCGTGCTTCCTTTTTTCCTTTTTGTA
TTAGTGAGTGGAATAACCTGGACGAGGACATACGAAATCTTCCTTCAATC
TCTCTTTTCGAAACCACGATACTCAGATTCTTAAAACCCAATGCCAATTC
GGTTTTCAGACTTGATGACAATAGAGGTGTGGTTCTACTTAACCGTTTAA
GGGTCGACTTCAGTCGTTTTCGGGAACATAAATTCAAACACAATTTTGCA
GACACAGTTGATCCTTTTTTGCAACTGTCGAAATAACTCTATCGAAACTA
CGAAGCATTTTCTGATGCGTTACTCTGATTTCTCCGATGATAGACATGTA
ATGTTTGACAGCCTTTTAGCTGAACAATTTGGGATTTTGATGGTGACATA
GAATGGATTGGAGACACAGTATGCTAGTGACAGAGAGAGAGAGCGACAGT
GGTAAAAGTGAAGAAGAGCCTAATGACGAGGAGTATGGAGAAGCAGAAAG
GGATGTAGAATCTGATGACGAAGAAAGTGACGAAGAAAACAATAATTGTG
TAGAAAAAAGTTTTTAAATAACTTCAAACATTCCTTAATTTTTACATTAC
AGTATACATACGTAAATTTTAAATTCATTTTTGTTATTCACTACCAAGTT
TTGGGTTTGAGCATTCTGGTCTGTAAAATACACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040198XLOC_040198Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064116-exon-scaffold_408-1575043694:107357..107474TCONS_00064116-exon-scaffold_408-1575043694:107357..107474Clytia hemisphaericaexon
TCONS_00064116-exon-scaffold_408-1575043694:105540..106170TCONS_00064116-exon-scaffold_408-1575043694:105540..106170Clytia hemisphaericaexon
TCONS_00064116-exon-scaffold_408-1510915933:107357..107474TCONS_00064116-exon-scaffold_408-1510915933:107357..107474Clytia hemisphaericaexon
TCONS_00064116-exon-scaffold_408-1510915933:105540..106170TCONS_00064116-exon-scaffold_408-1510915933:105540..106170Clytia hemisphaericaexon
TCONS_00064116-exon-scaffold_408-1491911889:107357..107474TCONS_00064116-exon-scaffold_408-1491911889:107357..107474Clytia hemisphaericaexon
TCONS_00064116-exon-scaffold_408-1491911889:105540..106170TCONS_00064116-exon-scaffold_408-1491911889:105540..106170Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_408supercontigscaffold_408:105540..107474 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.137049	0.2179	0.810464	0.425744	0.257482	0.670016	0.0758165	0.92012	0.017754	0.129287	0.532225	0	0.0703417	0	0	0.677571	0.671596	0.303799	0.216918	0.163492	0	0	0.763931	0.293133	2.63926	1.29314	0	0	1.673	0.878521
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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