TCONS_00064117 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00064117
Unique Name	TCONS_00064117
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3654

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_408:105540..109193-

transcript sequence

>TCONS_00064117 ID=TCONS_00064117|Name=TCONS_00064117|organism=Clytia hemisphaerica|type=transcript|length=3654bp
TTGTTGTTCAGCTAAAAGCTAATTCTACTTCATAGAAAAAATGTATTCAA
TTTGCAGTTCTGCTTTACTTTTGTTCTGCAGTTCTGTTGCTCCTGTACCC
TTCTCCATTCTCTCATGTGCTGTCCCATCGACTGCCCTTATAATTTTGAT
TTACCTGTTTTGCCCGACCTAAAAATACGATGTGCTGTTCACTGATTACG
TCTATATCTAAAAATTATTATCCACTGTTTACTTAAGATGATGTTCTCAA
TCAAGAAAATACTATCTGCTGCCCCTAGATGATTTCTTCTCCTGTAAACG
AACAGCagataatttgaagaaaactaGCTATCCTAGAAATTCCGTACAAA
TGACTTTCCCGATGCTTCTTTACAAAGGTCAAACCAGAAAAGTCTCTTGC
TCGATATCATCAAGGCAGCAATGAAAACTACAGACAAACTGAAAGCGAAG
GATAAAACGCTatcagaaagaaaaattaccaCTCTCATTGTATGATTGTT
GCACTATCGAGCGATCTCGCAAAACATCCCAGAGCAACACATTCTCacac
ttatttctaccatatctgtagatatgtagatatccgtaaatctaccatat
gtatAGATATgtagaatccgtaaatctagATACGGTAAATGCTTAATATA
AAGACTTATGCGCATCcgtaatttatcgttcttttaAATCACATGCAGTT
CATCcccgtgataaacaaaaaggaatgcatcggtaggggtggtacagtca
ctttcggtcggggttgtggaggCAAAATATGTCGTATCGTTCTCTTATAG
Ttatagttagggttagggttagggtttgaaatatgtcgttctttgatatt
tagggttagggttaaatTAGCGTTAAAttgtctggaaacgttagatagtt
agggttaaggtttgtcgttctttaatagttgtcgctttttaatagttatt
tgtcgttttttttagATTGTCTGGATAGTATTTACCGTAACTACCAATAT
GGTAGATTTATGATTATGgatttttacatatctacacatatggtagaaat
aagtgcgAGATTGACCTGCCCAGAGATGGTTGATAAATGgatcaaaaaaa
ttctgaataCAATCCACGACGGGAGGTAGGAGCTCATTGATATTGTAGCC
GATAATTGGTGGATGCTCGCGCCATGAGATGTTCAATACGACTCTAAGCA
TTCTGTTGTAAGTGCCATCTAGACGTTTTAGAAGGCTTTTGGTGAGTGTA
CAGGTTGGTGAGCCATAGATTAACACTGATTCGACCGATTCGACAATCTC
ATTTGGTTTTGTCTGGGATGTTTTAATTCTATGATATGTCTGAATTTGTC
AAGCGCTGCTCAGCCTTATGCAATTCCTATTTCTACATCCTTTTCAGAAG
AAGCTATGTTTCTGTTTAATTCTTCTATCTGCCTGAGAGTAGTCTTGCTT
CGAGGTTGGATATTGCTGTTGAAGGTTGAAGGTCACATATTCGAATTTTT
TTAGTTCACATGAAGACGGATAGACGGATCTATTGGCAGCAGAAACTTCA
ATAgtctatactagacgtcacccgcgttttttacgcgttttttttgacgt
cacttttaactttcgaagctcctgcagtagcaaaataatcgaatttgcgt
caaaacacttgaagagcttctatttttcgaaaatatcgTCAACGAGGAAC
TCACTgtgaaacgagatgaaaaatccaggtttttagtgaggtgctctcTA
AAACTTCAAGAACATCAGGAGTTTTTCTGCATCTTCAGGGCTGACCGCGA
ACAGTGCAATGACGTCAGCGTGATCTGCATCCGTCAGGTGGGTTGCTGAA
TGACGTCTGCTTCGTGATCTTTGAATAGTGAATCCAAATGAATAGCGCTT
CGTCTCCTTGAAGGACCCCAGCAGATATGTTGAATAGATCCGTATCAACA
TCGGGAGATCTCAAAATAACATTTCTGCCGTGGTAAAGTGTCATAATGGC
GTCGACGATGGGATGAGGGCTCCGTAGGCACAGCTTCACGATTTTTATCT
CTGATATCTTCGAGGACTCTTCTAACTGTAAGGAATTGACCAGTCGCAGA
TAGGTTTTTGCGGAAACCGTTTTGGTTTTTACGCAGCACCTACTCGATTT
TTGGCTGAATACGGTTTAGCAGCATTGCGTTGTACATTTTTGCAGCGATA
TGCGTATAGTTCTTGGCGAGTCCAAGGTCACTCTGTTTTTAGGTAGGTTT
AAGTAGGCTGCAaccttttttctaaatttctattTCATGTTGGTGGTACA
ATGAATTACTGCATTACAGAAGAATGTCAagtttcccgttttccaaaccT
CAGGGAGGATGTCATCGAGACCTACGGCTTTTCTGTTCTTGAAtttattt
aaaacattttcgaGCTCGTCATTTACTTATATCAAACTCATGGTCGATGA
TAATTTCTGTGGATTGATCGTTTACTTTCGGTTCTTGGCAAGTCCTAAAA
ATACAATGACTTTGCCGTCGAGGCCCTTATCCCGCTTGGAGAAGGATGGG
ACCTAGCTGACGAAACCAAAGAGTTGTTGGAAAATTAGATATGCAAGATC
TTTTTCTTCAGTCTTGAGCAAACTGAAGAAAGACCACATGTAAGACCACA
TCTTGATTATGGAGATGTAGTATACGATCGTCCCGATAATTCCACTTGCT
CTGAAAAAAATCGAATCAATTCAATACAATGCCAGTCTTGAGATAACTGG
ATGTTTTAGGGGGACATCTAGAGAAAAAATCTATCTTGAGCTAGGTCTTG
AAAGCCTAGCGGACAGGCGACTAAGCCGCAGACTCTTCTATAAGATAATT
AAAGGCTTTGCGCCTACTTATCTTTCTAATATCCTTCCTCCCAAGAGGGG
GGAGAAGGttaatgaagatgaagatgaggaTGCTGGTGGAAGACGTAGGA
TTAGACCTCCTTTTGTGCCACCCTTTTGTCGAACCGAACGATATCGTGct
tccttttttcctttttgtattAGTGAGTGGAATAACCTGGACGAGGACAT
ACGAAATCTTCCTTCAATCTCTCTTTTCGAAACCACGATACTCAGATTCT
TAAAACCCAATGCCAATTCGGTTTTCAGACTTGATGACAATAGAGGTGTG
GTTCTACTTAACCGTTTAAGGGTCGACTTCAGTCGTTTTCGGGAACATAA
ATTCAAACACAATTTTGCAGACACAGTTGATCCTTTTTTGCAACTGTCGA
AATAACTCTATCGAAACTACGAAGCATTTTCTGATGCGTTACTCTGATTT
CTCCGATGATAGACATGTAATGTTTGACAGCCTTTTAGCTGAACAATTTG
GGATTTTGATGGTGACATAGAATGGATTGGAGACACAGTATGCTAGTGAC
AGAGAGAGAGAGCGACAGTGGTAAAAGTGAAGAAGAGCCTAATGACGAGG
AGTATGGAGAAGCAGAAAGGGATGTAGAATCTGATGACGAAGAAAGTGAC
GAAGAAAACAATAATTgtgtagaaaaaagtttttaaataacTTCAAACAT
TCCTTAATTTTTACATTACAGTATACATACgtaaattttaaattcatttt
tgttaTTCACTACCAAGTTTTGGGTTTGagcattctggtctgtaaaatac
acaa

Run BLAST on NCBI

transcript from alignment at scaffold_408:105540..109193-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00064117 ID=TCONS_00064117|Name=TCONS_00064117|organism=Clytia hemisphaerica|type=transcript|length=3654bp|location=Sequence derived from alignment at scaffold_408:105540..109193- (Clytia hemisphaerica)
TTGTTGTTCAGCTAAAAGCTAATTCTACTTCATAGAAAAAATGTATTCAA
TTTGCAGTTCTGCTTTACTTTTGTTCTGCAGTTCTGTTGCTCCTGTACCC
TTCTCCATTCTCTCATGTGCTGTCCCATCGACTGCCCTTATAATTTTGAT
TTACCTGTTTTGCCCGACCTAAAAATACGATGTGCTGTTCACTGATTACG
TCTATATCTAAAAATTATTATCCACTGTTTACTTAAGATGATGTTCTCAA
TCAAGAAAATACTATCTGCTGCCCCTAGATGATTTCTTCTCCTGTAAACG
AACAGCAGATAATTTGAAGAAAACTAGCTATCCTAGAAATTCCGTACAAA
TGACTTTCCCGATGCTTCTTTACAAAGGTCAAACCAGAAAAGTCTCTTGC
TCGATATCATCAAGGCAGCAATGAAAACTACAGACAAACTGAAAGCGAAG
GATAAAACGCTATCAGAAAGAAAAATTACCACTCTCATTGTATGATTGTT
GCACTATCGAGCGATCTCGCAAAACATCCCAGAGCAACACATTCTCACAC
TTATTTCTACCATATCTGTAGATATGTAGATATCCGTAAATCTACCATAT
GTATAGATATGTAGAATCCGTAAATCTAGATACGGTAAATGCTTAATATA
AAGACTTATGCGCATCCGTAATTTATCGTTCTTTTAAATCACATGCAGTT
CATCCCCGTGATAAACAAAAAGGAATGCATCGGTAGGGGTGGTACAGTCA
CTTTCGGTCGGGGTTGTGGAGGCAAAATATGTCGTATCGTTCTCTTATAG
TTATAGTTAGGGTTAGGGTTAGGGTTTGAAATATGTCGTTCTTTGATATT
TAGGGTTAGGGTTAAATTAGCGTTAAATTGTCTGGAAACGTTAGATAGTT
AGGGTTAAGGTTTGTCGTTCTTTAATAGTTGTCGCTTTTTAATAGTTATT
TGTCGTTTTTTTTAGATTGTCTGGATAGTATTTACCGTAACTACCAATAT
GGTAGATTTATGATTATGGATTTTTACATATCTACACATATGGTAGAAAT
AAGTGCGAGATTGACCTGCCCAGAGATGGTTGATAAATGGATCAAAAAAA
TTCTGAATACAATCCACGACGGGAGGTAGGAGCTCATTGATATTGTAGCC
GATAATTGGTGGATGCTCGCGCCATGAGATGTTCAATACGACTCTAAGCA
TTCTGTTGTAAGTGCCATCTAGACGTTTTAGAAGGCTTTTGGTGAGTGTA
CAGGTTGGTGAGCCATAGATTAACACTGATTCGACCGATTCGACAATCTC
ATTTGGTTTTGTCTGGGATGTTTTAATTCTATGATATGTCTGAATTTGTC
AAGCGCTGCTCAGCCTTATGCAATTCCTATTTCTACATCCTTTTCAGAAG
AAGCTATGTTTCTGTTTAATTCTTCTATCTGCCTGAGAGTAGTCTTGCTT
CGAGGTTGGATATTGCTGTTGAAGGTTGAAGGTCACATATTCGAATTTTT
TTAGTTCACATGAAGACGGATAGACGGATCTATTGGCAGCAGAAACTTCA
ATAGTCTATACTAGACGTCACCCGCGTTTTTTACGCGTTTTTTTTGACGT
CACTTTTAACTTTCGAAGCTCCTGCAGTAGCAAAATAATCGAATTTGCGT
CAAAACACTTGAAGAGCTTCTATTTTTCGAAAATATCGTCAACGAGGAAC
TCACTGTGAAACGAGATGAAAAATCCAGGTTTTTAGTGAGGTGCTCTCTA
AAACTTCAAGAACATCAGGAGTTTTTCTGCATCTTCAGGGCTGACCGCGA
ACAGTGCAATGACGTCAGCGTGATCTGCATCCGTCAGGTGGGTTGCTGAA
TGACGTCTGCTTCGTGATCTTTGAATAGTGAATCCAAATGAATAGCGCTT
CGTCTCCTTGAAGGACCCCAGCAGATATGTTGAATAGATCCGTATCAACA
TCGGGAGATCTCAAAATAACATTTCTGCCGTGGTAAAGTGTCATAATGGC
GTCGACGATGGGATGAGGGCTCCGTAGGCACAGCTTCACGATTTTTATCT
CTGATATCTTCGAGGACTCTTCTAACTGTAAGGAATTGACCAGTCGCAGA
TAGGTTTTTGCGGAAACCGTTTTGGTTTTTACGCAGCACCTACTCGATTT
TTGGCTGAATACGGTTTAGCAGCATTGCGTTGTACATTTTTGCAGCGATA
TGCGTATAGTTCTTGGCGAGTCCAAGGTCACTCTGTTTTTAGGTAGGTTT
AAGTAGGCTGCAACCTTTTTTCTAAATTTCTATTTCATGTTGGTGGTACA
ATGAATTACTGCATTACAGAAGAATGTCAAGTTTCCCGTTTTCCAAACCT
CAGGGAGGATGTCATCGAGACCTACGGCTTTTCTGTTCTTGAATTTATTT
AAAACATTTTCGAGCTCGTCATTTACTTATATCAAACTCATGGTCGATGA
TAATTTCTGTGGATTGATCGTTTACTTTCGGTTCTTGGCAAGTCCTAAAA
ATACAATGACTTTGCCGTCGAGGCCCTTATCCCGCTTGGAGAAGGATGGG
ACCTAGCTGACGAAACCAAAGAGTTGTTGGAAAATTAGATATGCAAGATC
TTTTTCTTCAGTCTTGAGCAAACTGAAGAAAGACCACATGTAAGACCACA
TCTTGATTATGGAGATGTAGTATACGATCGTCCCGATAATTCCACTTGCT
CTGAAAAAAATCGAATCAATTCAATACAATGCCAGTCTTGAGATAACTGG
ATGTTTTAGGGGGACATCTAGAGAAAAAATCTATCTTGAGCTAGGTCTTG
AAAGCCTAGCGGACAGGCGACTAAGCCGCAGACTCTTCTATAAGATAATT
AAAGGCTTTGCGCCTACTTATCTTTCTAATATCCTTCCTCCCAAGAGGGG
GGAGAAGGTTAATGAAGATGAAGATGAGGATGCTGGTGGAAGACGTAGGA
TTAGACCTCCTTTTGTGCCACCCTTTTGTCGAACCGAACGATATCGTGCT
TCCTTTTTTCCTTTTTGTATTAGTGAGTGGAATAACCTGGACGAGGACAT
ACGAAATCTTCCTTCAATCTCTCTTTTCGAAACCACGATACTCAGATTCT
TAAAACCCAATGCCAATTCGGTTTTCAGACTTGATGACAATAGAGGTGTG
GTTCTACTTAACCGTTTAAGGGTCGACTTCAGTCGTTTTCGGGAACATAA
ATTCAAACACAATTTTGCAGACACAGTTGATCCTTTTTTGCAACTGTCGA
AATAACTCTATCGAAACTACGAAGCATTTTCTGATGCGTTACTCTGATTT
CTCCGATGATAGACATGTAATGTTTGACAGCCTTTTAGCTGAACAATTTG
GGATTTTGATGGTGACATAGAATGGATTGGAGACACAGTATGCTAGTGAC
AGAGAGAGAGAGCGACAGTGGTAAAAGTGAAGAAGAGCCTAATGACGAGG
AGTATGGAGAAGCAGAAAGGGATGTAGAATCTGATGACGAAGAAAGTGAC
GAAGAAAACAATAATTGTGTAGAAAAAAGTTTTTAAATAACTTCAAACAT
TCCTTAATTTTTACATTACAGTATACATACGTAAATTTTAAATTCATTTT
TGTTATTCACTACCAAGTTTTGGGTTTGAGCATTCTGGTCTGTAAAATAC
ACAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040198	XLOC_040198	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00064117-exon-scaffold_408-1575043694:105540..109193	TCONS_00064117-exon-scaffold_408-1575043694:105540..109193	Clytia hemisphaerica	exon
TCONS_00064117-exon-scaffold_408-1510915933:105540..109193	TCONS_00064117-exon-scaffold_408-1510915933:105540..109193	Clytia hemisphaerica	exon
TCONS_00064117-exon-scaffold_408-1491911889:105540..109193	TCONS_00064117-exon-scaffold_408-1491911889:105540..109193	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_408	supercontig	scaffold_408:105540..109193 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.191448	0.166504	0.230973	0.374807	0.362714	0.170134	2.2048	2.7965	0.48052	0.693636	0.399649	0.834358	1.28419	1.13503	1.17771	2.04484	1.59714	1.76882	0.132282	0.128838	1.11754	0.902439	0.516676	0.528696	1.24037	0.784344	0.414947	0.53996	0.806331	0.458795

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00064117 vs. Swiss-Prot (Human)

BLAST of TCONS_00064117 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00064117 (transcript) - C. hemisphaerica