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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064199 ID=TCONS_00064199|Name=TCONS_00064199|organism=Clytia hemisphaerica|type=transcript|length=3449bpRun BLAST on NCBI protein sequence of TCONS_00064199-protein >TCONS_00064199-protein ID=TCONS_00064199-protein|Name=TCONS_00064199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1100bp MPPTDVLISEYQKYANALTDSSVADDDKLKYAQEISQNFEAISSSTHYSTRun BLAST on NCBI transcript from alignment at scaffold_41:161151..171770- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064199 ID=TCONS_00064199|Name=TCONS_00064199|organism=Clytia hemisphaerica|type=transcript|length=10620bp|location=Sequence derived from alignment at scaffold_41:161151..171770- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_41:161151..171770- >TCONS_00064199 ID=TCONS_00064199|Name=TCONS_00064199|organism=Clytia hemisphaerica|type=CDS|length=3303bp|location=Sequence derived from alignment at scaffold_41:161151..171770- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064199 vs. Swiss-Prot (Human)
Match: TRRAP (Transformation/transcription domain-associated protein OS=Homo sapiens GN=TRRAP PE=1 SV=3) HSP 1 Score: 592.808 bits (1527), Expect = 0.000e+0 Identity = 333/552 (60.33%), Postives = 407/552 (73.73%), Query Frame = 1
Query: 1648 NRDAKESFTVADYREMVKTLVCGVKTITWGAGSCKLPGDIQ-IPVYPQGNKVFLPSETETFIRLLKYALVALDVYQISMNPSGVGYVRMTNSPHQIRMKEEKEILEHFAGVFTMLNTATFKEVFSATIEYLVERIHNNYAFQIIPNAFLANPNTSATFATILVNFLLGRLKDMGTKSERANLYLKLFKLVFGSVSLFAQENEQMLKPHLHDIVNNSMELALTAKEPYNYFLLLRALFRSIGGGNHDXXXXXXXXXXXXXXXXXXXXQSGIHKQYMKDLFVELCLTVPVRXXXXXXXXXXXXXXXVSALNGSQSLVSQGLRTLELCVDNLQPDFLYDHIQPVKSDLMQALWKTLRNPMETMAHVAFRVLGKFGGGGRKMLQEPQQLTYRATENIGACLMLHFMDCNKPVNLPISVIIEKAVSVLKTQVPTLPLSSQQNNYSVENMPFYREQAWTIAKHFLVGALSLEDNEVFFKKLVRDQSYKENEVTKNGKACVPPCVDEQSKKNFQQGLTSMLFAATIKELQNDSIPFMLGVLRQIALLIVTQQAGKFSKP 3300
+++ K++F V D R +VKTLVCGVKTITWG SCK PG+ Q IP NK P ET+ +I+L+KYA+ ALD+YQ+ + +G Y+R+ N +RMKEEKE+LEHFAGVFTM+N TFKE+F T+ Y+VERI NYA QI+ N+FLANP TSA FATILV +LL RL +MG+ E +NLYLKLFKLVFGSVSLFA ENEQMLKPHLH IVN+SMELA TAKEPYNYFLLLRALFRSIGGG+HDLLYQEFLPLLP LLQGLN LQSG+HKQ+MKDLFVELCLTVPVRLSSLLPYLPMLMDPLVSALNGSQ+LVSQGLRTLELCVDNLQPDFLYDHIQPV+++LMQALW+TLRNP ++++HVA+RVLGKFGG RKML+E Q+L Y TE G + + F DC + LP+ IE A+ LK S P+YR QAW + K FLV +SLEDN+ +L+ ++ E + + D ++K F+Q LT +A IK+L+ ++PF+ ++R ++ V QQ G F P
Sbjct: 534 DKEDKQTFQVTDCRSLVKTLVCGVKTITWGITSCKAPGEAQFIP-----NKQLQPKETQIYIKLVKYAMQALDIYQVQIAGNGQTYIRVANC-QTVRMKEEKEVLEHFAGVFTMMNPLTFKEIFQTTVPYMVERISKNYALQIVANSFLANPTTSALFATILVEYLLDRLPEMGSNVELSNLYLKLFKLVFGSVSLFAAENEQMLKPHLHKIVNSSMELAQTAKEPYNYFLLLRALFRSIGGGSHDLLYQEFLPLLPNLLQGLNMLQSGLHKQHMKDLFVELCLTVPVRLSSLLPYLPMLMDPLVSALNGSQTLVSQGLRTLELCVDNLQPDFLYDHIQPVRAELMQALWRTLRNPADSISHVAYRVLGKFGGSNRKMLKESQKLHYVVTEVQGPSITVEFSDCKASLQLPMEKAIETALDCLK---------------SANTEPYYRRQAWEVIKCFLVAMMSLEDNKHALYQLLAHPNFTEKTIPNVIISHRYKAQDTPARKTFEQALTGAFMSAVIKDLRPSALPFVASLIRHYTMVAVAQQCGPFLLP 1064 HSP 2 Score: 506.523 bits (1303), Expect = 2.657e-151 Identity = 262/478 (54.81%), Postives = 338/478 (70.71%), Query Frame = 1
Query: 64 LISEYQKYANALTDSSVADDDKLKYAQEISQNFEAISSSTHYSTFLEFAIPKFLSVLKDGEPQFTTDSVKQELRKLLLETIHRIPANDSLKTHVSSILDVMFNILTIDNEENVLVCLRIIIELHKQYRPPIKPEIKMFLQFVINFYKEFPNTAKTHFDIVTVTPTGHLPPDTSATSTTGSVPLAGTSAMKVPQIGSPVSQLNEATTPGRXXXXXXXXXXXXXXXLKVLAELPIIVVLMYQLYKQNVQGKIGEFIPVVMNTITLQPSLGCRKLTTFNKEIYVDFTAAQIKTLSFLAYIVRIFQDLVSQYSNNMVAGMLALFRYCPQEVAHLRKELLIAARHILATDLRSKFVPYIEQLFDEDVLIGNGWTVNEALRPLAYSTLADFVHHVRSLLTLPNLSIAVQLFSKNVYDESLPISIQRMSCKLLLNLVECIRQRSDEAA--GREILMKMLEVFVRKFQTIAKHHIPMIMEKCELSS 1491
L+ +Y ++ ALTD + D+ KLK QE+S+NFE ++SS YSTFLE IP+FL+ L+DGE QF + Q+LRKL+LE IHRIP N+ L+ H ++L VMF L +NEENVL+CLRIIIELHKQ+RPPI EI FL FV YKE P +F+ V P +PP V + T A+KV +P + +E T + I + + SLKVLAELPIIVVLMYQLYK N+ + EF+P++MNTI +Q S R+ +NKE+Y DF AAQIKTLSFLAYI+RI+Q+LV++YS MV GML L CP E AHLRKELLIAA+HIL T+LR++F+P +++LFDE +LIG+G+T E LRPLAYSTLAD VHHVR L L +LS+AVQLF+KN+ DESLP SIQ MSCKLLLNLV+CIR +S++ + GR++LM+MLEVFV KF TIA++ + I +KC+ S
Sbjct: 17 LMKKYLQFVAALTDVNTPDETKLKMMQEVSENFENVTSSPQYSTFLEHIIPRFLTFLQDGEVQFLQEKPAQQLRKLVLEIIHRIPTNEHLRPHTKNVLSVMFRFLETENEENVLICLRIIIELHKQFRPPITQEIHHFLDFVKQIYKELPKVVNRYFENPQVIPENTVPPPEM-------VGMITTIAVKV----NPEREDSETRT--------HSIIPRGSLSLKVLAELPIIVVLMYQLYKLNIHNVVAEFVPLIMNTIAIQVSAQARQHKLYNKELYADFIAAQIKTLSFLAYIIRIYQELVTKYSQQMVKGMLQLLSNCPAETAHLRKELLIAAKHILTTELRNQFIPCMDKLFDESILIGSGYTARETLRPLAYSTLADLVHHVRQHLPLSDLSLAVQLFAKNIDDESLPSSIQTMSCKLLLNLVDCIRSKSEQESGNGRDVLMRMLEVFVLKFHTIARYQLSAIFKKCKPQS 475 The following BLAST results are available for this feature:
BLAST of TCONS_00064199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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