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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064381 ID=TCONS_00064381|Name=TCONS_00064381|organism=Clytia hemisphaerica|type=transcript|length=2027bp
TCAAACTTctgcaaaaaactttttgtcaataaCACCTCAATATATGGCCA
AGAACATTGCCACTAAATCATTTTCGTGAAAATAAAGATTCTTGTTCTGA
AGAATtcgagaaatatttttgaagattaTTAAGTTGAACAAGATGTTGGA
TGGAGACTGAAGGATTTCGTTGGTGGACATTTTTTTGCTGCTTAGCAAAT
GGACACAACACTTTCACACCTTATCTCTTGTGGTGTTCTCAATTACATTA
TTTAAGCGTCAACATCCAACACGAAAGAAAAGACAGAAGTAGCAAACGAC
AGTCGAGAAAGAAAAGTTGTCGACACAAAACACAGTCTTCTACTCAATAA
CTTGTGTTGCATTCGTCAAATGAGAAACCAACATCAAAAGACCGAAAGAA
TATTATAACTTGGTGAAGATAACTGACTGTGGAAAGTTATTAAACAAACA
GAGTAACGAATATATATAGTTCAAATTATTATAAACGATTATCATATCTG
ATATAAAGTTGAGCTTTATACTCATTTAAAGATATTAACAAATTGTTATA
GATTTTGTGTTGAGAGTGAAATTTTGGTCCTTGTTATGGTTGACAGTGGC
TTTTGCACTTTCTTTACTAAAGATTTGGACATGTTCGATGATGCCAAGAG
TGCGGTGATAGCAAATCTCGACGTGCCACCATCGAACAACAACAATGACA
AACAGCAAACCAAAGCGTTCAATTTCATGAATTTCTCATTAACGAATCCT
TTGGAAGATGCTTTCATGAACAACAGACCACCCTTACTCACCACCCCCTT
TCACCCACAGCAGCCGTCATCTACGCCACCAGCATCTTCCACACCGCCAA
TCACCTCCTCTTCCTCGACAACTTCTTTAGATGAATATACTGGAAATAAA
TCTCCCAAAAGCGAAGTCACATCTCTTCAAGACGAACAGAACTCATTGAT
AGAGCAACGCATTCAAGATCGCACAATCAACCTGAGGAACACTGCATGGC
CGACCTACCCAAACAACCGTCTCTTCAACTTCGACTTGGGCATAGGAGGC
ACGGGTCAAGCGGACCTTTCTCCCATCTTCACCAACACAATTTCTTCATG
CATGGTCACTCCTCCTAATCGAAACATGAACTGGTTTAACAGACCTTCCA
GTGTTGGGACCAATGACTCCTGGTCAAACGAATTCTCTCAAGACCCAACT
ATGAGAAGTCGACCCTGTTTCTCTTCACACCAAACGCGAGAACTAGAAAG
AGAGTTTGGCGTCTGTCAATACGTCACAAGGCGTCGACGCATCGAGCTCG
CTTACACGTTAAGCTTGACGGAGAAGCAAATCAAAACATGGTTTCAGAAT
CGCCGCGTGAAAGAGCGGAAACAAAAGAAGATATCAGGAGAGGTGATTGA
GCATCCAGATCATACACAAGGTCTTCTCAATCAGACGGTCATTTAGAATG
AGGAGAGATTGTTGCTGAAAGTCATCACAGATGTGGAAGATCGTCAAAGT
AGAGGCGCACGAAAACCCTCACTAAGTAGTATGGCGACACCATGGCTCAA
ATCACCCGTCTCCAGTTTTGTAAAGGTGAACTTTTAGCGCCGAACTTTCG
ATGGAGACTAAAAGCGTTCAACAAGACATTTTCAGTTCCGCTTATGAGTT
TCTGGTTAAGGAAAAGAAAACAAGAAGAGTCTTGACAGGATGTTGTCTGC
CAGACGCCTGTACTTAGTGATAATGAGTGGAGAACGACACAGTGTTGTGA
TGGATTGTTAAGTACAGGTGAAAAGGACACCTTTTGAACAAATAAGGAGA
GGACCATATGTTGAAGCGGACCGCATATTCGACCACAACTTCAAACCATC
TTTTAATCATCTGTTTATATAAAAGTAGACGAGTAAAGTAGAAGAAAGTT
TTTaagttatttttgaaagaatttcttgtattttttgaaggaaatgttat
ttattatttactGAAATGACAGGCATGTATTGTATTGGATATATTTATTT
ACATTATATATTATCACAAAGAGAAAG Run BLAST on NCBI protein sequence of Cdx caudal homeodomain protein >TCONS_00064381-protein ID=TCONS_00064381-protein|Name=Cdx caudal homeodomain protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MVDSGFCTFFTKDLDMFDDAKSAVIANLDVPPSNNNNDKQQTKAFNFMNF
SLTNPLEDAFMNNRPPLLTTPFHPQQPSSTPPASSTPPITSSSSTTSLDE
YTGNKSPKSEVTSLQDEQNSLIEQRIQDRTINLRNTAWPTYPNNRLFNFD
LGIGGTGQADLSPIFTNTISSCMVTPPNRNMNWFNRPSSVGTNDSWSNEF
SQDPTMRSRPCFSSHQTRELEREFGVCQYVTRRRRIELAYTLSLTEKQIK
TWFQNRRVKERKQKKISGEVIEHPDHTQGLLNQTVI Run BLAST on NCBI transcript from alignment at scaffold_412:34729..37638- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064381 ID=TCONS_00064381|Name=TCONS_00064381|organism=Clytia hemisphaerica|type=transcript|length=2910bp|location=Sequence derived from alignment at scaffold_412:34729..37638- (Clytia hemisphaerica)
TCAAACTTCTGCAAAAAACTTTTTGTCAATAACACCTCAATATATGGCCA
AGAACATTGCCACTAAATCATTTTCGTGAAAATAAAGATTCTTGTTCTGA
AGAATTCGAGAAATATTTTTGAAGATTATTAAGTTGAACAAGATGTTGGA
TGGAGACTGAAGGATTTCGTTGGTGGACATTTTTTTGCTGCTTAGCAAAT
GGACACAACACTTTCACACCTTATCTCTTGTGGTGTTCTCAATTACATTA
TTTAAGCGTCAACATCCAACACGAAAGAAAAGACAGAAGTAGCAAACGAC
AGTCGAGAAAGAAAAGTTGTCGACACAAAACACAGTCTTCTACTCAATAA
CTTGTGTTGCATTCGTCAAATGAGAAACCAACATCAAAAGACCGAAAGAA
TATTATAACTTGGTGAAGATAACTGACTGTGGAAAGTTATTAAACAAACA
GAGTAACGAATATATATAGTTCAAATTATTATAAACGATTATCATATCTG
ATATAAAGTTGAGCTTTATACTCATTTAAAGATATTAACAAATTGTTATA
GATTTTGTGTTGAGAGTGAAATTTTGGTCCTTGTTATGGTTGACAGTGGC
TTTTGCACTTTCTTTACTAAAGATTTGGACATGTTCGATGGTAAGTCACT
ACCTTGCTATCGAAAAAGAAGAAAGTTGATTTCGAAGATGCCGTTAAACG
GACTACTTTGATTGGATATAATTTAGCGGGGATTAAATCTCGCGGATTTT
GGAAATTAAATCCTGGCGAAATCTTAGAATTTCGCGAATGAGCTCAACCA
CGAAACTTAATCCCGACGAAAATGTATCCCATTGAAGTAAAGTTTATCTT
CTTTTCTTCTTGTCTTCAAATTGAAACGAGAATCCAATAAGACTATTCAA
TTCAATATTACTGTAACAATCTAGTGCTAAGAAATATGGAATTGAGTCTT
TCACTTTAAGCACTTTTACTATTCGAGCATTTTGTTGAGCTCACTTTGCT
GGGTGATAAACATCCAGTGGAATAAGACGGAGTAAAAGTAGAGTTGTTTT
CACAATAAACAATCGATTCCTTCTGTTTTTATGTAGCATTAATGGGAACC
TAGGCTAAGCAACACTTCAACAAACGGAATTCAGTATCTTTTATAATATC
CTTTTCATAAAAACTCTTTTGTCAATCGTTTCGTGTATTTTTGAAGTATC
ATCAACAAAACTTTCCAGTGTGAAGTTGAGATCTGATCAGTAATGAAATG
TTTGACGATTTCTTTAGATGCCAAGAGTGCGGTGATAGCAAATCTCGACG
TGCCACCATCGAACAACAACAATGACAAACAGCAAACCAAAGCGTTCAAT
TTCATGAATTTCTCATTAACGAATCCTTTGGAAGATGCTTTCATGAACAA
CAGACCACCCTTACTCACCACCCCCTTTCACCCACAGCAGCCGTCATCTA
CGCCACCAGCATCTTCCACACCGCCAATCACCTCCTCTTCCTCGACAACT
TCTTTAGATGAATATACTGGAAATAAATCTCCCAAAAGCGAAGTCACATC
TCTTCAAGACGAACAGAACTCATTGATAGAGCAACGCATTCAAGATCGCA
CAATCAACCTGAGGAACACTGCATGGCCGACCTACCCAAACAACCGTCTC
TTCAACTTCGACTTGGGCATAGGAGGCACGGGTCAAGCGGACCTTTCTCC
CATCTTCACCAACACAATTTCTTCATGCATGGTCACTCCTCCTAATCGAA
ACATGAACTGGTTTAACAGACCTTCCAGTGTTGGGACCAATGACTCCTGG
TCAAACGAATTCTCTCAAGGTAAACGTTTTCTTTAAAAGACAGTCCCGTC
TCTACTCGATCTTAATTTCTCCACAGCGGCTTTCGTTTTGTTTGTTTCAA
AAGGGGGTACAACGATTTTCATTCACAAAAAGCGCCTCTCGAACATTGTA
AGTCAATAAGGACCAATATGGAAAAATAGGTTGCAGTGGACAAAAAAATT
GATTTTGAACAAATCCTCCCATATTTTTTCATGCTGGCACTATTATCAAA
CATTCGTTTTTGTTATACTTTTCAGACCCAACTATGAGAAGTCGACCCTG
TTTCTCTTCACACCAAACGCGAGAACTAGAAAGAGAGTTTGGCGTCTGTC
AATACGTCACAAGGCGTCGACGCATCGAGCTCGCTTACACGTTAAGCTTG
ACGGAGAAGCAAATCAAAACATGGTTTCAGAATCGCCGCGTGAAAGAGCG
GAAACAAAAGAAGATATCAGGAGAGGTGATTGAGCATCCAGATCATACAC
AAGGTCTTCTCAATCAGACGGTCATTTAGAATGAGGAGAGATTGTTGCTG
AAAGTCATCACAGATGTGGAAGATCGTCAAAGTAGAGGCGCACGAAAACC
CTCACTAAGTAGTATGGCGACACCATGGCTCAAATCACCCGTCTCCAGTT
TTGTAAAGGTGAACTTTTAGCGCCGAACTTTCGATGGAGACTAAAAGCGT
TCAACAAGACATTTTCAGTTCCGCTTATGAGTTTCTGGTTAAGGAAAAGA
AAACAAGAAGAGTCTTGACAGGATGTTGTCTGCCAGACGCCTGTACTTAG
TGATAATGAGTGGAGAACGACACAGTGTTGTGATGGATTGTTAAGTACAG
GTGAAAAGGACACCTTTTGAACAAATAAGGAGAGGACCATATGTTGAAGC
GGACCGCATATTCGACCACAACTTCAAACCATCTTTTAATCATCTGTTTA
TATAAAAGTAGACGAGTAAAGTAGAAGAAAGTTTTTAAGTTATTTTTGAA
AGAATTTCTTGTATTTTTTGAAGGAAATGTTATTTATTATTTACTGAAAT
GACAGGCATGTATTGTATTGGATATATTTATTTACATTATATATTATCAC
AAAGAGAAAG Coding sequence (CDS) from alignment at scaffold_412:34729..37638- >TCONS_00064381 ID=TCONS_00064381|Name=TCONS_00064381|organism=Clytia hemisphaerica|type=CDS|length=861bp|location=Sequence derived from alignment at scaffold_412:34729..37638- (Clytia hemisphaerica)
ATGGTTGACAGTGGCTTTTGCACTTTCTTTACTAAAGATTTGGACATGTT
CGATGATGCCAAGAGTGCGGTGATAGCAAATCTCGACGTGCCACCATCGA
ACAACAACAATGACAAACAGCAAACCAAAGCGTTCAATTTCATGAATTTC
TCATTAACGAATCCTTTGGAAGATGCTTTCATGAACAACAGACCACCCTT
ACTCACCACCCCCTTTCACCCACAGCAGCCGTCATCTACGCCACCAGCAT
CTTCCACACCGCCAATCACCTCCTCTTCCTCGACAACTTCTTTAGATGAA
TATACTGGAAATAAATCTCCCAAAAGCGAAGTCACATCTCTTCAAGACGA
ACAGAACTCATTGATAGAGCAACGCATTCAAGATCGCACAATCAACCTGA
GGAACACTGCATGGCCGACCTACCCAAACAACCGTCTCTTCAACTTCGAC
TTGGGCATAGGAGGCACGGGTCAAGCGGACCTTTCTCCCATCTTCACCAA
CACAATTTCTTCATGCATGGTCACTCCTCCTAATCGAAACATGAACTGGT
TTAACAGACCTTCCAGTGTTGGGACCAATGACTCCTGGTCAAACGAATTC
TCTCAAGACCCAACTATGAGAAGTCGACCCTGTTTCTCTTCACACCAAAC
GCGAGAACTAGAAAGAGAGTTTGGCGTCTGTCAATACGTCACAAGGCGTC
GACGCATCGAGCTCGCTTACACGTTAAGCTTGACGGAGAAGCAAATCAAA
ACATGGTTTCAGAATCGCCGCGTGAAAGAGCGGAAACAAAAGAAGATATC
AGGAGAGGTGATTGAGCATCCAGATCATACACAAGGTCTTCTCAATCAGA
CGGTCATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064381-exon-scaffold_412-1575043694:36999..37638 | TCONS_00064381-exon-scaffold_412-1575043694:36999..37638 | Clytia hemisphaerica | exon |
| TCONS_00064381-exon-scaffold_412-1575043694:35820..36371 | TCONS_00064381-exon-scaffold_412-1575043694:35820..36371 | Clytia hemisphaerica | exon |
| TCONS_00064381-exon-scaffold_412-1575043694:34729..35563 | TCONS_00064381-exon-scaffold_412-1575043694:34729..35563 | Clytia hemisphaerica | exon |
| TCONS_00064381-exon-scaffold_412-1510915933:36999..37638 | TCONS_00064381-exon-scaffold_412-1510915933:36999..37638 | Clytia hemisphaerica | exon |
| TCONS_00064381-exon-scaffold_412-1510915933:35820..36371 | TCONS_00064381-exon-scaffold_412-1510915933:35820..36371 | Clytia hemisphaerica | exon |
| TCONS_00064381-exon-scaffold_412-1510915933:34729..35563 | TCONS_00064381-exon-scaffold_412-1510915933:34729..35563 | Clytia hemisphaerica | exon |
| TCONS_00064381-exon-scaffold_412-1491911889:36999..37638 | TCONS_00064381-exon-scaffold_412-1491911889:36999..37638 | Clytia hemisphaerica | exon |
| TCONS_00064381-exon-scaffold_412-1491911889:35820..36371 | TCONS_00064381-exon-scaffold_412-1491911889:35820..36371 | Clytia hemisphaerica | exon |
| TCONS_00064381-exon-scaffold_412-1491911889:34729..35563 | TCONS_00064381-exon-scaffold_412-1491911889:34729..35563 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_412 | supercontig | scaffold_412:34729..37638 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00064381 vs. Swiss-Prot (Human)
Match: HXB7 (Homeobox protein Hox-B7 OS=Homo sapiens GN=HOXB7 PE=1 SV=4) HSP 1 Score: 79.7221 bits (195), Expect = 2.074e-16 Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 1
Query: 1204 RSRPCFSSHQTRELEREFGVCQYVTRRRRIELAYTLSLTEKQIKTWFQNRRVKERKQKKISG 1389
R R ++ +QT ELE+EF +Y+TRRRRIE+A+TL LTE+QIK WFQNRR+K +K+ K +G
Sbjct: 139 RGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAG 200
The following BLAST results are available for this feature:
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