TCONS_00064391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064391
Unique NameTCONS_00064391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064391 ID=TCONS_00064391|Name=TCONS_00064391|organism=Clytia hemisphaerica|type=transcript|length=360bp
GATTGTGAAAAGAAATATCTTCATCCACTTAACGGGTAACACAGAAAGCT
AATGTAATATCTTGAAAACAGAATAGAAATCACACACCGTCAGGCTTACC
GTTTGAAGTATTCATTTTTTGGTTCCATGtgaatcatatttcttttattt
atcaGTAACTGCTTTATTCAAACTTAAAGAGACCTACTTTACTCTTTTTT
AGTCTCGCTGGCTTAACATGATCAGCCGCCAAATACCAATTTGCACCAGA
AATAAATATGTGTATTTATTGGGGGGTTATATGTTGATAACGAAGAATGC
AAAAGAAGCGAGGTTTCCCGATTCGAAGATACGGGAAACAAAGTTTCTTT
TAGGATTCTG
Run BLAST on NCBI

transcript from alignment at scaffold_412:158327..158686

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064391 ID=TCONS_00064391|Name=TCONS_00064391|organism=Clytia hemisphaerica|type=transcript|length=360bp|location=Sequence derived from alignment at scaffold_412:158327..158686 (Clytia hemisphaerica)
CAGAATCCTAAAAGAAACTTTGTTTCCCGTATCTTCGAATCGGGAAACCT
CGCTTCTTTTGCATTCTTCGTTATCAACATATAACCCCCCAATAAATACA
CATATTTATTTCTGGTGCAAATTGGTATTTGGCGGCTGATCATGTTAAGC
CAGCGAGACTAAAAAAGAGTAAAGTAGGTCTCTTTAAGTTTGAATAAAGC
AGTTACtgataaataaaagaaatatgattcaCATGGAACCAAAAAATGAA
TACTTCAAACGGTAAGCCTGACGGTGTGTGATTTCTATTCTGTTTTCAAG
ATATTACATTAGCTTTCTGTGTTACCCGTTAAGTGGATGAAGATATTTCT
TTTCACAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040375XLOC_040375Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064391-exon-scaffold_412-1491911889:158327..158686TCONS_00064391-exon-scaffold_412-1491911889:158327..158686Clytia hemisphaericaexon
TCONS_00064391-exon-scaffold_412-1510915933:158327..158686TCONS_00064391-exon-scaffold_412-1510915933:158327..158686Clytia hemisphaericaexon
TCONS_00064391-exon-scaffold_412-1575043694:158327..158686TCONS_00064391-exon-scaffold_412-1575043694:158327..158686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_412supercontigscaffold_412:158327..158686 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.469904	1.36302	1.16796	1.04105	1.7535	1.66441	2.27945	4.03737	5.83546	1.47145	2.97675	5.38742	3.77896	3.40161	2.12633	1.5749	1.76377	2.8925	0	1.11145	5.25424	3.55519	0.87124	1.80143	2.52257	3.60214	1.97431	2.15976	2.347	1.35604
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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