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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064393 ID=TCONS_00064393|Name=TCONS_00064393|organism=Clytia hemisphaerica|type=transcript|length=2221bp
CATGTTTTTATTCGAACGACTCAAAAGTATTTAATGAGAATTAGAATTAA
AATGAGCTTCGTGATTAAAGAAAAAAGCTTCGATTTTGagtcttaaaata
ttctatTGCACTATTGAGTCTAATGATTCTTATAGAAAGAATTCTTATAG
AAGGAATTCTGATAGAaggaattcttataaaaaatgtgtatatacATGCA
CTTTATATCTACAAACTACTGTagtgtattaattttggcgCTATTTTACA
TTTTGTGCTTGATCAAAAAAAGACTACTTTTGGCGGGtatatttaatttg
gcggtgtATGAATTTTGTTAATATCAGTGGATGCAAAGACTTAAGGCCTA
ATGCTATCTATCAGTTACTTGCGACTTTATTTTTACATCTTGACAAAATA
TCTTTTGCTCGTTTACTCAAGTTATGCTCGCCACCAATCAGATCACACCA
TTTCATTTGCTCCTCCAGTAAAGAAACAGCTGATAAATAGTCCTTATTAT
ATTCATAGTCTTTAGCTAAATTGATCATAGTTCGTACGATTCCTTTCGGG
TCTTCAGGATACAGTTTGATACgattttctaaaactttttgaTGTAGAGC
TATCGCTTCGTTAAGctcgtttgtttgaaagtaATCGTTTGCTAAATTAT
TCATAATGCATAATAAATCTTTATGAATTTCATCCTTGTCTAATTGTTTT
GATAATATTATTTCTTGAATTCTAATTGCTTCAtgaattttgtcaatatt
tctgTAAATGCTCACAAGGTTTAAGAAAGCTCTTATCATATCTTCGTCCT
CATGACCCATCCTTCCATAACCACTGATCAATGTTTCCTCGAATTCAACC
AACGTATCCTCGAATTCTTCAGCGTTTTTTATATCCCGGCTTTGTAGTGA
AATAATATTAGAATGCACCAATAATGTTAGCTGATGGTCCTTGCCAAGAA
TGTCGATTCTCCTATTCATAACATATGCATATAACTCGATCGCTTTAATG
TAATCTTTCTGCTCATAGTAGCAATTAGCAAGCAAATATTTTGTGTTTAA
TGTTTTCTCGTGGTTTTCGCCCAATGTATTAATTCTCCTATTCATAACAT
CTGTATATAACTCGATCGCTTTGATGTAATTGTTCTGCCCATAGTAGCAA
TCAGCAAGAGAATATTTTGTGTTTAATGTTTCCTCGTGGTTTTCGCCCAA
TGTATTAATTCTCCTATTCATAACATCTGTATATATCTCGATCGCTTTGA
TGTAATCGTTCTGCATATAGTAGCATTCGGCAAGCAAATATTTTGTGTTT
AATGTTTTCTCGTGGTTATCGCCCAATGTATAAATTCTCCTATTCATAAC
ATCTGTAGATAACTCGATcgcttttgaatattttttgattattgAATATT
TATTAGCTAAGTTGAATTTTGTTATTAGTGTAGTTTCATCGTTTTCACCA
AAAACTTGATTGTTACTCTGTGTTACTTTTTCACCCCATGAAATGGCCTT
TTCATGATCACCTACATCTGAATAATTAACCATCAGGTTATTCATAGTAA
ATAGTGTTACTTTATCATGTTCACCATAAAGTTCAGATTTTTCCTTGTAA
ACCACTTCATTCATCTCCAAGCTTTTCTTGTGGTTGCCAATATTTCGATA
AAATGTTGCAAGGTTGGTTTTCACTTCTAGAACGTATTGCATTTTTATGG
TGCCCAATTTAGACGATGATAATGTTTCTTCTAGTATTTTGATAGCGTCT
GTGAACCTTtgcaaatcttttaaaattaatGCTTGGTTATGTTTAAcgtg
gaaacaatcaaaatcgtTTGAAAATTCACATTTTGTAATAATTCTGTCAA
TGATTGTCAAAGCAGCTTCAGACTTTCGTTTTACTTTCGCGATGTCTCTT
ATTTCATTAACGTAATCGATCATCTCTTCATAAAAGCTTTCGTCATCAAC
TTCAGTTGTTAAGATTTCAAAGAAATgattaaaatattcttttgcaAAGT
CAACATGATGAATAGAACGAACTTTTTGTTCTTCAtcaatttctttaaag
aaagcTTTTAAACACTTGATAAGATAACCGATTTCATTAGTTTTACTCAA
CGTAAGGACAGTTGCTTGAATCAACGAATGGATGGTCACGATTATTCCAT
TGTCAGTGTTTCGTTTATTTATAATCGATGCACTTTCTAACTGGTGAAGG
GCAGAATCAAGATCAATTTTG Run BLAST on NCBI protein sequence of TCONS_00064393-protein >TCONS_00064393-protein ID=TCONS_00064393-protein|Name=TCONS_00064393-protein|organism=Clytia hemisphaerica|type=polypeptide|length=619bp
KIDLDSALHQLESASIINKRNTDNGIIVTIHSLIQATVLTLSKTNEIGYL
IKCLKAFFKEIDEEQKVRSIHHVDFAKEYFNHFFEILTTEVDDESFYEEM
IDYVNEIRDIAKVKRKSEAALTIIDRIITKCEFSNDFDCFHVKHNQALIL
KDLQRFTDAIKILEETLSSSKLGTIKMQYVLEVKTNLATFYRNIGNHKKS
LEMNEVVYKEKSELYGEHDKVTLFTMNNLMVNYSDVGDHEKAISWGEKVT
QSNNQVFGENDETTLITKFNLANKYSIIKKYSKAIELSTDVMNRRIYTLG
DNHEKTLNTKYLLAECYYMQNDYIKAIEIYTDVMNRRINTLGENHEETLN
TKYSLADCYYGQNNYIKAIELYTDVMNRRINTLGENHEKTLNTKYLLANC
YYEQKDYIKAIELYAYVMNRRIDILGKDHQLTLLVHSNIISLQSRDIKNA
EEFEDTLVEFEETLISGYGRMGHEDEDMIRAFLNLVSIYRNIDKIHEAIR
IQEIILSKQLDKDEIHKDLLCIMNNLANDYFQTNELNEAIALHQKVLENR
IKLYPEDPKGIVRTMINLAKDYEYNKDYLSAVSLLEEQMKWCDLIGGEHN
LSKRAKDILSRCKNKVASN Run BLAST on NCBI transcript from alignment at scaffold_412:184243..186463 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064393 ID=TCONS_00064393|Name=TCONS_00064393|organism=Clytia hemisphaerica|type=transcript|length=2221bp|location=Sequence derived from alignment at scaffold_412:184243..186463 (Clytia hemisphaerica)
CAAAATTGATCTTGATTCTGCCCTTCACCAGTTAGAAAGTGCATCGATTA
TAAATAAACGAAACACTGACAATGGAATAATCGTGACCATCCATTCGTTG
ATTCAAGCAACTGTCCTTACGTTGAGTAAAACTAATGAAATCGGTTATCT
TATCAAGTGTTTAAAAgctttctttaaagaaattgaTGAAGAACAAAAAG
TTCGTTCTATTCATCATGTTGACTTtgcaaaagaatattttaatcATTTC
TTTGAAATCTTAACAACTGAAGTTGATGACGAAAGCTTTTATGAAGAGAT
GATCGATTACGTTAATGAAATAAGAGACATCGCGAAAGTAAAACGAAAGT
CTGAAGCTGCTTTGACAATCATTGACAGAATTATTACAAAATGTGAATTT
TCAAacgattttgattgtttccacgTTAAACATAACCAAGCattaatttt
aaaagatttgcaAAGGTTCACAGACGCTATCAAAATACTAGAAGAAACAT
TATCATCGTCTAAATTGGGCACCATAAAAATGCAATACGTTCTAGAAGTG
AAAACCAACCTTGCAACATTTTATCGAAATATTGGCAACCACAAGAAAAG
CTTGGAGATGAATGAAGTGGTTTACAAGGAAAAATCTGAACTTTATGGTG
AACATGATAAAGTAACACTATTTACTATGAATAACCTGATGGTTAATTAT
TCAGATGTAGGTGATCATGAAAAGGCCATTTCATGGGGTGAAAAAGTAAC
ACAGAGTAACAATCAAGTTTTTGGTGAAAACGATGAAACTACACTAATAA
CAAAATTCAACTTAGCTAATAAATATTcaataatcaaaaaatattcaaaa
gcgATCGAGTTATCTACAGATGTTATGAATAGGAGAATTTATACATTGGG
CGATAACCACGAGAAAACATTAAACACAAAATATTTGCTTGCCGAATGCT
ACTATATGCAGAACGATTACATCAAAGCGATCGAGATATATACAGATGTT
ATGAATAGGAGAATTAATACATTGGGCGAAAACCACGAGGAAACATTAAA
CACAAAATATTCTCTTGCTGATTGCTACTATGGGCAGAACAATTACATCA
AAGCGATCGAGTTATATACAGATGTTATGAATAGGAGAATTAATACATTG
GGCGAAAACCACGAGAAAACATTAAACACAAAATATTTGCTTGCTAATTG
CTACTATGAGCAGAAAGATTACATTAAAGCGATCGAGTTATATGCATATG
TTATGAATAGGAGAATCGACATTCTTGGCAAGGACCATCAGCTAACATTA
TTGGTGCATTCTAATATTATTTCACTACAAAGCCGGGATATAAAAAACGC
TGAAGAATTCGAGGATACGTTGGTTGAATTCGAGGAAACATTGATCAGTG
GTTATGGAAGGATGGGTCATGAGGACGAAGATATGATAAGAGCTTTCTTA
AACCTTGTGAGCATTTAcagaaatattgacaaaattcaTGAAGCAATTAG
AATTCAAGAAATAATATTATCAAAACAATTAGACAAGGATGAAATTCATA
AAGATTTATTATGCATTATGAATAATTTAGCAAACGATtactttcaaaca
aacgagCTTAACGAAGCGATAGCTCTACAtcaaaaagttttagaaaatcG
TATCAAACTGTATCCTGAAGACCCGAAAGGAATCGTACGAACTATGATCA
ATTTAGCTAAAGACTATGAATATAATAAGGACTATTTATCAGCTGTTTCT
TTACTGGAGGAGCAAATGAAATGGTGTGATCTGATTGGTGGCGAGCATAA
CTTGAGTAAACGAGCAAAAGATATTTTGTCAAGATGTAAAAATAAAGTCG
CAAGTAACTGATAGATAGCATTAGGCCTTAAGTCTTTGCATCCACTGATA
TTAACAAAATTCATacaccgccaaattaaatataCCCGCCAAAAGTAGTC
TTTTTTTGATCAAGCACAAAATGTAAAATAGcgccaaaattaatacactA
CAGTAGTTTGTAGATATAAAGTGCATgtatatacacattttttataagaa
ttcctTCTATCAGAATTCCTTCTATAAGAATTCTTTCTATAAGAATCATT
AGACTCAATAGTGCAatagaatattttaagactCAAAATCGAAGCTTTTT
TCTTTAATCACGAAGCTCATTTTAATTCTAATTCTCATTAAATACTTTTG
AGTCGTTCGAATAAAAACATG Coding sequence (CDS) from alignment at scaffold_412:184243..186463 >TCONS_00064393 ID=TCONS_00064393|Name=TCONS_00064393|organism=Clytia hemisphaerica|type=CDS|length=1860bp|location=Sequence derived from alignment at scaffold_412:184243..186463 (Clytia hemisphaerica)
AAAATTGATCTTGATTCTGCCCTTCACCAGTTAGAAAGTGCATCGATTAT
AAATAAACGAAACACTGACAATGGAATAATCGTGACCATCCATTCGTTGA
TTCAAGCAACTGTCCTTACGTTGAGTAAAACTAATGAAATCGGTTATCTT
ATCAAGTGTTTAAAAgctttctttaaagaaattgaTGAAGAACAAAAAGT
TCGTTCTATTCATCATGTTGACTTtgcaaaagaatattttaatcATTTCT
TTGAAATCTTAACAACTGAAGTTGATGACGAAAGCTTTTATGAAGAGATG
ATCGATTACGTTAATGAAATAAGAGACATCGCGAAAGTAAAACGAAAGTC
TGAAGCTGCTTTGACAATCATTGACAGAATTATTACAAAATGTGAATTTT
CAAacgattttgattgtttccacgTTAAACATAACCAAGCattaatttta
aaagatttgcaAAGGTTCACAGACGCTATCAAAATACTAGAAGAAACATT
ATCATCGTCTAAATTGGGCACCATAAAAATGCAATACGTTCTAGAAGTGA
AAACCAACCTTGCAACATTTTATCGAAATATTGGCAACCACAAGAAAAGC
TTGGAGATGAATGAAGTGGTTTACAAGGAAAAATCTGAACTTTATGGTGA
ACATGATAAAGTAACACTATTTACTATGAATAACCTGATGGTTAATTATT
CAGATGTAGGTGATCATGAAAAGGCCATTTCATGGGGTGAAAAAGTAACA
CAGAGTAACAATCAAGTTTTTGGTGAAAACGATGAAACTACACTAATAAC
AAAATTCAACTTAGCTAATAAATATTcaataatcaaaaaatattcaaaag
cgATCGAGTTATCTACAGATGTTATGAATAGGAGAATTTATACATTGGGC
GATAACCACGAGAAAACATTAAACACAAAATATTTGCTTGCCGAATGCTA
CTATATGCAGAACGATTACATCAAAGCGATCGAGATATATACAGATGTTA
TGAATAGGAGAATTAATACATTGGGCGAAAACCACGAGGAAACATTAAAC
ACAAAATATTCTCTTGCTGATTGCTACTATGGGCAGAACAATTACATCAA
AGCGATCGAGTTATATACAGATGTTATGAATAGGAGAATTAATACATTGG
GCGAAAACCACGAGAAAACATTAAACACAAAATATTTGCTTGCTAATTGC
TACTATGAGCAGAAAGATTACATTAAAGCGATCGAGTTATATGCATATGT
TATGAATAGGAGAATCGACATTCTTGGCAAGGACCATCAGCTAACATTAT
TGGTGCATTCTAATATTATTTCACTACAAAGCCGGGATATAAAAAACGCT
GAAGAATTCGAGGATACGTTGGTTGAATTCGAGGAAACATTGATCAGTGG
TTATGGAAGGATGGGTCATGAGGACGAAGATATGATAAGAGCTTTCTTAA
ACCTTGTGAGCATTTAcagaaatattgacaaaattcaTGAAGCAATTAGA
ATTCAAGAAATAATATTATCAAAACAATTAGACAAGGATGAAATTCATAA
AGATTTATTATGCATTATGAATAATTTAGCAAACGATtactttcaaacaa
acgagCTTAACGAAGCGATAGCTCTACAtcaaaaagttttagaaaatcGT
ATCAAACTGTATCCTGAAGACCCGAAAGGAATCGTACGAACTATGATCAA
TTTAGCTAAAGACTATGAATATAATAAGGACTATTTATCAGCTGTTTCTT
TACTGGAGGAGCAAATGAAATGGTGTGATCTGATTGGTGGCGAGCATAAC
TTGAGTAAACGAGCAAAAGATATTTTGTCAAGATGTAAAAATAAAGTCGC
AAGTAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064393-exon-scaffold_412-1491911889:184243..186463 | TCONS_00064393-exon-scaffold_412-1491911889:184243..186463 | Clytia hemisphaerica | exon |
| TCONS_00064393-exon-scaffold_412-1510915933:184243..186463 | TCONS_00064393-exon-scaffold_412-1510915933:184243..186463 | Clytia hemisphaerica | exon |
| TCONS_00064393-exon-scaffold_412-1575043694:184243..186463 | TCONS_00064393-exon-scaffold_412-1575043694:184243..186463 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_412 | supercontig | scaffold_412:184243..186463 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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