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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064400 ID=TCONS_00064400|Name=TCONS_00064400|organism=Clytia hemisphaerica|type=transcript|length=3124bp
GAATTTTTtgtcttgattttctaaaatttcgtttttcttAAACCAGAATA
ATTTTTCAGGAAATGGGAAAGTTTTTAGAAATGCGGGAGATTGGGGAGAA
AGTCATGAAAATGCGTGAGATTAGGTGGAATTTTTCACGCAGGAGTGTTG
ACAGTTACGGTTTcatgtttcACATCAATCATATCCAACTCGGTTGCTCA
AGATATTACATTTGGCATTGACTTTCCTCAAAAGAATACCCCACATGATG
AAATAAAACCCAGTTTACTCATAGTTTTACGTAATGAAGTCAAGAGTGGT
CATCTCCAGATATCGAATTCTGTCCTTACGTGATGAAAATGGAAACCCTC
GCTAGTCTTGGATTTTACGTAATAGCATGCAGAATCATTAGTGTTCATGG
AGCCCTGCTAAGCTGTGGTTTTACGTAATGTGGAGCTGTAAGCCTTCATC
TTCACTTATATCAAACCTTATGTGATGGAAAGTGAATCCATGGCTACTTC
ATGACTTTATGCAATAGCAGAGATGTAGAGTTTCCAATACTCACTCATCC
TCGCATGATGAAATTTGAAACCATAATCTGTGACTTTACCCAATCATAGT
GATAATTTTTACCGTATCCAATACTGGACCTTGCATGATAGAGAGACTCT
GGCTAGTCTTTGGTTTTACGCAACAGTATGTGGAGTTGTAAGCGATCATT
TCTATTATCGTAAGCTTTCATGATGGAAAGTGAAACCCTGGATAGTTTGA
TTTTACGCAATCGTATGGTGGAGTTGCAAGTGATCATTTCTAATATCCGA
TATGCATCCTTTCATGAAGGAGAACGAAACCCCGGTTAGTCTGCGATTTT
ACGCAATGTATGTGGAGTTGTAAACGATTAATTTTAATATTCAATATCCA
ACCTTTCATGATGGAAAGTGAAACCCGGTTAGTCTGTGATTTTATGCAAT
CGTATGGTGGAGTTGTAAGCAATCATTTCTAATATCCGATATCCCATCTC
ACACGATAAAGAGCAAAACCTGTGATGGTGGAGTTGTAAGCGATCATTCT
AATATCTGATATCCAATCTCATCACACGATGGAAAGCGAGATCATGATAT
TCCAGCCCTCTACTACGCTATGGAAGGTGAAATCCTGATTAATTTACGGA
GTAGTGAATGGAGTCATAAGCATTCATAGACAGAGACCCAATCCTGCTTG
AACGAATGAATAGATTATCTGGAAGCTTAAATTAGGCAGCAACTGTCAGC
TTCGCTGtgacaaatattaaaaataatttatttttagctgatttttttct
tctttactgagtattttttttttcttacacaaataagaaaaataacattg
ttttttataaaaatttcaatttcattattaattttttctcaACAAAGTAG
AACTTCAAGACATACTGTTTGCCTCACTCATTGAAAGTTATACTTTCGGC
AGTTTTATTTTGTATGGCGATTTTTGGATTTCATCCGTTTTCTAAATTAC
ATATTCTATCATacacaaaaaattacattttataatcttataaatttttt
atataaatatgaatattaaatgattatataattttttgataTTCTATAGT
GTGCACCCTTCCACATGGGACATTAATGTTTTGGAAAGTAATCCTCCGGT
GGGACGTAATTTCTGGATTTTTGGTGGGGAAAAACGGATTAATTTGGGTg
agactttttgataaaatcttggATTTGAAGAACTTCTTTCAATGCAGCTC
CCTAAAAAACACAAAGCACATCTTAGCTCTAAAAGGTACCAACAATCAAC
CATTGTTCATCAGCTTTTTGAATGCAATGCGGTCATAGGTCATATAAATT
CATAACTTGGAACACACTCTGATTTTCCTCCTGAAAAAAGTATCAGTTAA
ttccggtctccacttgcgcacgCTATGATTGCACTTTTCAAGCAAAAGCT
TTCACGTTATTGGTCATGTGGCAGTctaaaatagcactttttaatacttt
ttttcaAGCATGTACAACTCTTTATGATGTTATtcttttctccaagcaaa
aatttttaaagaattgaAGCCGAAAGTCATGATCGCAGCATACGCAAGTG
GAGAACGGTCTTCAGCAACAATCTAGactttgagtttatagctatactTT
TTCTGCATAAAACTGTTTCTGTTAAGTTTTCGTGATTTCGCGCTCCTctt
cgaaaataatgaaaatgctAGATCTATTCATCGGctgtaaatttaaaaaa
gtcaaattttgcttcacttttttttgcaggAGAAAGCTTatagttgccta
tctagcccttcgagcaGAGAAACGAGATGGAGTAGAAACCAGCTTATTTG
ATCAACCAACGTTTTATGAACGTTTCTATTGAAAACGCCTTTGTTTTAGC
TTCGTCGTTAGAAAAAGTTCAAGAAATGACGGCTcttcctaaaatttggc
tagTTTCTAAATGAACATGATCATAAAAATGAATAGACGCTTTTCGTTTT
GACTGATTACTTTCTACACTTTCAGTACGAAGTAGCAAGTTCTACACCAT
TTTGTTGCctgaaaaattctcatcacaATAATGATAAGTTGTTTCGACAA
AATTTGGTACAGGTAGAGCTTCGGGAAAAGCAGAAAACATAATTTATTTA
CTTTCTTGTATTCAGGCTTTTTATCTGATGATACGGTTATATcattagaa
tcgctaggaaactCTGAACAAGAAAATACAGGAACTTTTGGTCTTAGCGA
GGTTCACCCAATATAGTTTACGCATAATTAGACTcagaacaaaagaattt
tgtcacgcCATGCTAATAATGCGGATTTTTTGaggcaacaacaaaagaaa
tccattaacggaaacaaactcccttaaggTTAAGGGCAAAGGACCTGGTA
TAGGAGGAGCTgtaattccattgttttcaagaagctgttatCCATCTCTT
TACACTCCTCTGCCTCgagctttacagatctgtggctCGGACTCAAAATT
CTAGGTGGGACATTGaaccccttgcacactatgaatataactaagttttt
taaatgtatatttgtatatattcttaatttctttttgCCAGTTAACTAGG
GTCCTGGTAAAATATATATCGACA Run BLAST on NCBI transcript from alignment at scaffold_413:117832..125772+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064400 ID=TCONS_00064400|Name=TCONS_00064400|organism=Clytia hemisphaerica|type=transcript|length=7941bp|location=Sequence derived from alignment at scaffold_413:117832..125772+ (Clytia hemisphaerica)
GAATTTTTtgtcttgattttctaaaatttcgtttttcttAAACCAGAATA
ATTTTTCAGGAAATGGGAAAGTTTTTAGAAATGCGGGAGATTGGGGAGAA
AGTCATGAAAATGCGTGAGATTAGGTGGAATTTTTCACGCAGGAGTGTTG
ACAGTTACGGTTTcatggtaagttaattatgcATGTCTGCTTGGGTTTCC
AAGTTTAAGAGATTTGGTTAAAGGGTTCGTTCATAGACTGAATCAAACTG
TATCAGGCATAGTTGTGCACCAAACTCGAAAGTTTTAGAATTTTCTGACC
TGAGgtactcttctgtgcttaattgtaggggagTCACTTtgcattttttg
gaaaaaaatcacccTCATAGTattttataatgaccccccattttatgatt
tttcctcCTGAGCACCCACCCACTTGATAGTAGTATTGAGGGTGGAGCCC
TCAAAAATTGGACAATTTTAGGAAAATATAGGCTAAATTATAGTCCAAAA
TAAgcctatttttcctttttcagttAAAAAAGTGAAATCTTTGAGAAAAg
gaaagttttttcagattgaGTTTCATGAACCCCCCATTTTattaaacacc
cccttcttttACCGAAATTTATCAACATCATCCCCATAGcattttataat
gaccccccCACTTTATGATTTTTCTTCGAGAGTACCAACCCCCCTCTTTA
TTCCACCCCCTACAAATAAGCACAgagtaaatttttatttctctaaaatt
ttgagcttggatacccaggctagtcTGTGATAGTACTAGGTAATGGCTCT
ACAATACACCTTTGGTAAGATTTTCCAAACCTTGTTCCCTAATTGTTTGC
AGTGAATTAATTTACTCAAACCAGCAAGGCAGGCAGTACAGTGAGTCTGT
AAAAAAGGAAATGAGAAATATTAAACAATAAAATCCTCTTTATCATTTCT
TATGGTATACGATTGATGTTTTTTGACAACTTGTATGATTAATAGTAAAG
AACACACAGAGAAacattaaaatatcaaatttaacaaCTTTGTGAAGGAC
TCTCTCTTTTATGTACACACATAAACACACATTAATTACATCCCATATAA
AATGATATATGAGGATATTTTGTTTACCAGTTTCTATTtcctttttcctt
tttattatGGAATCACGGTGTAAACAATCATGGCTTTAACGAGATAACTC
CTTGAACGCCCAATACAAGGGCATGTTTTCTCTTAGTAAGAAAAGGCATT
CATCACATCAAAAACCAAGAGAAATTAGAAAGGAGTACAGTCAGAAATAA
TTAATAACAACTTCTTTATACAAAAGGTAAGTTTATGTATGATGAATATG
TATGATCAATATCCATTTTAACAGGAATGACGCCAGGGATGAACCAGACA
TCTCTTGCTATTATCAAAGTCTGTATTATTTAAAACTTAAACAATCTAGT
TTGATAACAGAAATATGTATTTTTTGTGCTATTAAAAATTGTTATTAAAC
TCCTTTTGGTAGATTAATTTAAAACTATCCGTGCtcaattgtgttcaatt
gctGTGAGTTATTGCAGTAGTAAAAAGTTAGCAATTGTAGTACTTTGAAG
gcaaatatgattattttattgaataaacaaaaaaatgaaggaCAAAATTT
CTGTCTTTCATGTTATTACtattacaatgtatagcaatgtgccctgttat
tattattattaatttatttgttaatgcaggtcaggttctatatacaaaaT
TATATCcaatatattatatataattcCGTATAGTATATGgcaaaatatgc
aaaaatacatTTTGCCTTTGCAGTGGTTGGTTTTTTAGCCTGTAGGTCCA
CATCACTTTTTTTACTCCCAATGTATATCAtgtaaaaaagtaaaagcaaC
CACTGCAAAGGCAAAgtgtttttttgcaaaacttgAGGAGATGGGATAAG
GTTTGGTGTGGTTTTCTGTGGGAATTCAAAtgattcaaaaatatatacta
cTGTAGGTACGACAGTAAGTTTTAATAAATATTATATTAATTATAGGATA
TTTGCTAAAtgataaatatataaaataatttGATATAAGTATTTAGAGAT
TAGAATAAGTAATAAATTAAGTAGTTCTAGAAATATATGTAGTCTTCTTG
TTGGAGAGCTTTCCCAGTCATATCAtagtatgaacccccccccttttttt
aaggggggatccgagttttcaaggaaggctttatagggggggatgggcaa
ttttccagttaaaatggggggtttgagcttatagggggggggatcaaata
aaaatgggggggatagtaacattttggttaaaagaattttatttcAGAGG
GCAATTAAGAACTCAAGGGTGCATAAGTAACTATTATATTGATGAAAgtc
ttatttcttatttttcctaGTTTTACTATTATTAGTTTACTGTTTATTTG
CTAGTGTTTTCAAGTTCATTGACTATTGGTACGAATTCacactgaaaaat
atatttcatttatcAAAATTCTTCCCCAATACTGGGAGTACAAGTTATAT
GCTGGGGGCTTGGACCCCTGTAAATGGtgcgggatcaaaaaattttaaaa
ataggggggatacctttatagggggggatgaaatattaatgggggggtTC
AGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNggggggggggggttcagacccctctgcacactatgcatattaaaat
ttattttgtcaaGACAGTCAGACTTTTTCAGGGCCTCTTTGAAGGCATCA
TAAGTATTTTTCTCCCTGGTGGAATTAGGAATATTATTCCACACAATAGC
AGCTCTATATTTGAAAGAGCGTTTATAGTTAACAAAAGTAAAGCGTGCTT
AGTCAATTTTAGATGAGTTTCTGTTACCACGAGTAACTGATTTTGTaatg
agatctgttaagagGGGTGAACACAGACCATTGTAGATTTTATACACTTT
GCAAGCTGTACTCTTTTTATAGTAGTAAGCAATTCCATTCCAATTTGCAG
AAGATAAAACATAGGCATCAGAGACTGACTTCTTCAAACGATTGATGAAA
CGAGCTGCTCTGAAATGGACTTTTTCAATAATTACTGGACAATAGGGTGT
CTGAATTTCCCGAGATAAAGGATACCGTAAAGAGCGGATGGAAGGATACC
TTGAAAATAAATAGTAGAGAGAGTAGATTTTGGCATTCCTCACATTTGAT
ATAGCTTTTTAAATTTAAGACTAAAgctttttgtaactttttgaacATGG
ACCCCCCAtttcaattcatcatgaatTATTACACCCAGACATTTTGTAGA
GTTTATCAATTCAATACTTTTGTTGCAGATTGACAAATTTTGAAGTGGAC
CGGTGGAGcggtttttgaacataactttaCATTTCCCTGGATGAATTGTT
AATGAATTTTTTCTTGGCAAAGTGTTCTAATTCATTTGCGTTTTGTTGGA
TGTTTTTTATAACCGTGTCTGTGTCTAAACCCACAGTGTAGGCAGTAGAG
TCATCAGCAAGCTGGTCTAGTTCGCAAGTAACACTATCATTCATATCATT
GACATTTTACTGTGAAGCAGCAGGGACCAATGAGTGATCCCTGAGGCACA
CCATATGCTACGTTTTCATGTTGGGAGTGAGCTCCATTAATGACCGTAAA
TAGTTTGCAGTTGGACAAGTAGCTTgtaagaaagtttaaaaagtctCCTG
AGACATCAGAAGCACTCGACTTTTTCAATAAGATGGGATTTGATACCCTG
TCGAAACTTTTACGAAAATCAATAAAGAGGGTACCAACGGATTGACGCGA
GTCAATAGCTTTTCTCCATTTCTCTGTCATATATAGAAGTATGTCATCAG
TTGATCGTTGTGGTCTGAAACCCTACTGATGTTCTGATTGAAGATTGTGC
TGTCTAAGATGATATGTTAGCTGAGAGCTGATGAGGTGTTCAACGATTGT
GCTTGGAATTGACAGCAGAGATATTAGTCTGAAATTCAAGCAATCAGTCT
TCGATCCTTTCTTGAATACTGCTGTAACTTTTGAAGTTTCCCATTTGGTG
GGAAAGGAGTTTGACGATAAACTGCAACTAACAAGGTGTTGTAGTCCCTC
AATTGAAGCTTCAGGGTTTAAAGAAAGATCTTTGGCTGTGTTACTATCAG
GACCACATGCTTTGCCAACTTTGACAGCAGCTTTGAAGGATGTTTTTAAT
AGTTCTTTCGAGAACTGGATTGTAGAAATTGTGGAAGTTATACGATAGAT
GTAAGGATTCAAGGTTCCGTTTTCATCAGTCTGAGGTGGAGTTGCGAGTT
GTTTACCGATGttggcaaaaaaagtttttcatagTTTTTGCTTTTTCAAA
GTCGTCAGTAACTATTATCATTTTCGTTCTTTAAGGGACCAATATGTTGC
TTGTTTGCTTTTCCTTTGTGGTTGGTATTAATGTTCTTATAGTTCCTCAC
CGAGATTAGTTTTGGAGGTGAGCTTGTACGCCGCAAACTCAAGAAGAAAT
AAATGAGGTTATTGTCTGAAAGCGATATTGCATATGTTCAAATTGTTTGT
TATTCCGTGAAAGCCTCCTATTTTTTCTTTGGACAATTACTCTTTTATTT
ATCAATAAAGAAAGCCCACTAAATTGTAGAGCAAGATTTTCACTAGTCTT
TGCGTATATTGGATAAACCACCGAGAGGTAGAATTGGTAACCTAGCGCAG
CTGCAGAGAAACATTATGATCGCAATATAATATGGTCACAGGATGTGCCT
GACCTCAAAGTTGTATaaagttttaaattcaaatggGGGATTGTTTTTCA
TCAGCCAGTACTTATTGCTACTGGGAGAGACCTATATTTTTTTGTTCCAG
TGGTTAAATCAATAaaactctatttttcttttagtttcACATCAATCATA
TCCAACTCGGTTGCTCAAGATATTACATTTGGCATTGACTTTCCTCAAAA
GAATACCCCACATGATGAAATAAAACCCAGTTTACTCATAGTTTTACGTA
ATGAAGTCAAGAGTGGTCATCTCCAGATATCGAATTCTGTCCTTACGTGA
TGAAAATGGAAACCCTCGCTAGTCTTGGATTTTACGTAATAGCATGCAGA
ATCATTAGTGTTCATGGAGCCCTGCTAAGCTGTGGTTTTACGTAATGTGG
AGCTGTAAGCCTTCATCTTCACTTATATCAAACCTTATGTGATGGAAAGT
GAATCCATGGCTACTTCATGACTTTATGCAATAGCAGAGATGTAGAGTTT
CCAATACTCACTCATCCTCGCATGATGAAATTTGAAACCATAATCTGTGA
CTTTACCCAATCATAGTGATAATTTTTACCGTATCCAATACTGGACCTTG
CATGATAGAGAGACTCTGGCTAGTCTTTGGTTTTACGCAACAGTATGTGG
AGTTGTAAGCGATCATTTCTATTATCGTAAGCTTTCATGATGGAAAGTGA
AACCCTGGATAGTTTGATTTTACGCAATCGTATGGTGGAGTTGCAAGTGA
TCATTTCTAATATCCGATATGCATCCTTTCATGAAGGAGAACGAAACCCC
GGTTAGTCTGCGATTTTACGCAATGTATGTGGAGTTGTAAACGATTAATT
TTAATATTCAATATCCAACCTTTCATGATGGAAAGTGAAACCCGGTTAGT
CTGTGATTTTATGCAATCGTATGGTGGAGTTGTAAGCAATCATTTCTAAT
ATCCGATATCCCATCTCACACGATAAAGAGCAAAACCTGTGATGGTGGAG
TTGTAAGCGATCATTCTAATATCTGATATCCAATCTCATCACACGATGGA
AAGCGAGATCATGATATTCCAGCCCTCTACTACGCTATGGAAGGTGAAAT
CCTGATTAATTTACGGAGTAGTGAATGGAGTCATAAGCATTCATAGACAG
AGACCCAATCCTGCTTGAACGAATGAATAGATTATCTGGAAGCTTAAATT
AGGCAGCAACTGTCAGCTTCGCTGtgacaaatattaaaaataatttattt
ttagctgatttttttcttctttactgagtattttttttttcttacacaaa
taagaaaaataacattgttttttataaaaatttcaatttcattattaatt
ttttctcaACAAAGTAGAACTTCAAGACATACTGTTTGCCTCACTCATTG
AAAGTTATACTTTCGGCAGTTTTATTTTGTATGGCGATTTTTGGATTTCA
TCCGTTTTCTAAATTACATATTCTATCATacacaaaaaattacattttat
aatcttataaattttttatataaatatgaatattaaatgattatataatt
ttttgataTTCTATAGTGTGCACCCTTCCACATGGGACATTAATGTTTTG
GAAAGTAATCCTCCGGTGGGACGTAATTTCTGGATTTTTGGTGGGGAAAA
ACGGATTAATTTGGGTgagactttttgataaaatcttggATTTGAAGAAC
TTCTTTCAATGCAGCTCCCTAAAAAACACAAAGCACATCTTAGCTCTAAA
AGGTACCAACAATCAACCATTGTTCATCAGCTTTTTGAATGCAATGCGGT
CATAGGTCATATAAATTCATAACTTGGAACACACTCTGATTTTCCTCCTG
AAAAAAGTATCAGTTAAttccggtctccacttgcgcacgCTATGATTGCA
CTTTTCAAGCAAAAGCTTTCACGTTATTGGTCATGTGGCAGTctaaaata
gcactttttaatactttttttcaAGCATGTACAACTCTTTATGATGTTAT
tcttttctccaagcaaaaatttttaaagaattgaAGCCGAAAGTCATGAT
CGCAGCATACGCAAGTGGAGAACGGTCTTCAGCAACAATCTAGactttga
gtttatagctatactTTTTCTGCATAAAACTGTTTCTGTTAAGTTTTCGT
GATTTCGCGCTCCTcttcgaaaataatgaaaatgctAGATCTATTCATCG
GctgtaaatttaaaaaagtcaaattttgcttcacttttttttgcaggAGA
AAGCTTatagttgcctatctagcccttcgagcaGAGAAACGAGATGGAGT
AGAAACCAGCTTATTTGATCAACCAACGTTTTATGAACGTTTCTATTGAA
AACGCCTTTGTTTTAGCTTCGTCGTTAGAAAAAGTTCAAGAAATGACGGC
TcttcctaaaatttggctagTTTCTAAATGAACATGATCATAAAAATGAA
TAGACGCTTTTCGTTTTGACTGATTACTTTCTACACTTTCAGTACGAAGT
AGCAAGTTCTACACCATTTTGTTGCctgaaaaattctcatcacaATAATG
ATAAGTTGTTTCGACAAAATTTGGTACAGGTAGAGCTTCGGGAAAAGCAG
AAAACATAATTTATTTACTTTCTTGTATTCAGGCTTTTTATCTGATGATA
CGGTTATATcattagaatcgctaggaaactCTGAACAAGAAAATACAGGA
ACTTTTGGTCTTAGCGAGGTTCACCCAATATAGTTTACGCATAATTAGAC
TcagaacaaaagaattttgtcacgcCATGCTAATAATGCGGATTTTTTGa
ggcaacaacaaaagaaatccattaacggaaacaaactcccttaaggTTAA
GGGCAAAGGACCTGGTATAGGAGGAGCTgtaattccattgttttcaagaa
gctgttatCCATCTCTTTACACTCCTCTGCCTCgagctttacagatctgt
ggctCGGACTCAAAATTCTAGGTGGGACATTGaaccccttgcacactatg
aatataactaagttttttaaatgtatatttgtatatattcttaatttctt
tttgCCAGTTAACTAGGGTCCTGGTAAAATATATATCGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064400-exon-scaffold_413-1491911889:117832..117998 | TCONS_00064400-exon-scaffold_413-1491911889:117832..117998 | Clytia hemisphaerica | exon |
| TCONS_00064400-exon-scaffold_413-1510915933:117832..117998 | TCONS_00064400-exon-scaffold_413-1510915933:117832..117998 | Clytia hemisphaerica | exon |
| TCONS_00064400-exon-scaffold_413-1575043694:117832..117998 | TCONS_00064400-exon-scaffold_413-1575043694:117832..117998 | Clytia hemisphaerica | exon |
| TCONS_00064400-exon-scaffold_413-1491911889:122816..125772 | TCONS_00064400-exon-scaffold_413-1491911889:122816..125772 | Clytia hemisphaerica | exon |
| TCONS_00064400-exon-scaffold_413-1510915933:122816..125772 | TCONS_00064400-exon-scaffold_413-1510915933:122816..125772 | Clytia hemisphaerica | exon |
| TCONS_00064400-exon-scaffold_413-1575043694:122816..125772 | TCONS_00064400-exon-scaffold_413-1575043694:122816..125772 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_413 | supercontig | scaffold_413:117832..125772 + |
Blast
The following BLAST results are available for this feature:
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