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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064442 ID=TCONS_00064442|Name=TCONS_00064442|organism=Clytia hemisphaerica|type=transcript|length=2779bpRun BLAST on NCBI protein sequence of TCONS_00064442-protein >TCONS_00064442-protein ID=TCONS_00064442-protein|Name=TCONS_00064442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=823bp RKKKINLKELSSRKVHRDIDIKMPKQNEMELLTDDEDENCDPDELLQEVKRun BLAST on NCBI transcript from alignment at scaffold_415:94475..110234- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064442 ID=TCONS_00064442|Name=TCONS_00064442|organism=Clytia hemisphaerica|type=transcript|length=15760bp|location=Sequence derived from alignment at scaffold_415:94475..110234- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_415:94475..110234- >TCONS_00064442 ID=TCONS_00064442|Name=TCONS_00064442|organism=Clytia hemisphaerica|type=CDS|length=2472bp|location=Sequence derived from alignment at scaffold_415:94475..110234- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064442 vs. Swiss-Prot (Human)
Match: KIFC3 (Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4) HSP 1 Score: 455.292 bits (1170), Expect = 3.450e-145 Identity = 229/406 (56.40%), Postives = 291/406 (71.67%), Query Frame = 2
Query: 1271 LTQIRNEKCQLDEDLKNFNRRVATSLEGFKQQVLAAVNETNTRSNILAVRYKKEIELRKKLHNELVDLKGNIRVFCRVRPVIKEDGDDDEQ--AVTFGDDPDNDDALWVQNKSSNKHFQMDRVFQPNASQTEVFEDVEWLVTSCLDGFNVCIFAYGQTGSGKTFTMEGTKENPGINQRALKQLF-QCSNEMRDWNFTILVSFVEIYNEMLRDLLSVEPTTKLTIKQGKDGN---YVPDLTHVKVNNVRDVNEVFALGRANRSTACTDMNERSSRSHSVLTINVIGENINTGTRVNGKLNLVDLAGSERVSKSGSDGIRMKEAQCINKSLSALGDVIHALKNKSKHVPYRNSKLTYLLHDSLGGDSKTLMVVQVSPVVKNVGETICSLNFAQRVRQVELGTATRKVK 2470
L + N+ L ++ F + +L K ++ A+ E N+ + L +Y++E++LRKK HNELV LKGNIRV RVRPV KEDG+ E AVTF D D+D + + +K F++D+VF P ASQ +VF++V+ LVTSC+DGFNVCIFAYGQTG+GKT+TMEGT ENPGINQRAL+ LF + + DW +TI VS EIYNE+LRDLL EP KL I+ DG+ YVP LT +V +V D+N+VF G NR+T T++NE SSRSH++L + V G + +TG R GKLNLVDLAGSERV KSG++G R++EAQ INKSLSALGDVI AL+++ HVP+RNSKLTYLL DSL GDSKTLMVVQVSPV KN ET+ SL FA+RVR VELG R+ +
Sbjct: 375 LRTLTNDYNGLKRQVRGFPLLLQEALRSVKAEIGQAIEEVNSNNQELLRKYRRELQLRKKCHNELVRLKGNIRVIARVRPVTKEDGEGPEATNAVTF--DADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVELGPGLRRAE 778 The following BLAST results are available for this feature:
BLAST of TCONS_00064442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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