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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064474 ID=TCONS_00064474|Name=TCONS_00064474|organism=Clytia hemisphaerica|type=transcript|length=774bp
AGTTAAGCCTTTTCTGAGAAAATGTGAATTCCAacagtccaaaaaaaaaa
taaacaaaacgacAAAATGGCGTCAAATCATGATATGTATGATCAGAATG
GTAGTGCAAATGGTGATATTATTGTCTTTGGTTTTCAAAAGattgaaGAT
TTTCTACAAAAACGGGGTTGTTCGCATTTGCTCCAACATTTCGTACTTCA
GAAAATAGACGACACTGTTGCCTCATTCTGTGATGACAAAACCCTACTCG
ATTTGGGTTTATTGTATGGTGATTTAATTTCATTCAAACAAACATTTCGC
ACTTCAAATGACAATGGCACAAGCTCCCAAATTTTGCACTACAGAGAAAG
GGCTCAGCAGTTGAGTTCCAAACTGAAACGAACCCATACAGAACGAATAA
GCACAACCAACCGACCAGTGACCGTTAAAAGTCACTTCGAAATCCAATTT
GGCATCAAATgtctcgagaaaaaaaaatatgttcatAAACTGAACAAAAC
AATGACTTTTCAAGTGGTAAGGTCAGCCACATATGATCAACTTCATAAAA
TATGTAGACAGAAATTCAAAATTGCAGATAGTATTGAATCATTTATTGCT
ACATAtactggaaagaaaatagaagaGTCCTTTAAAGATTTGCAAGACTA
TCATGAGAAACATgctaaagagaaaaaaaaagtgcTCAATTTATATTTAT
ATGTGCCCGTGGTTTATGCAAGACTCGAGTTTAAGTGGGCATTAGAACAA
AATGTTGAAAGCTCGTCATCAGAT Run BLAST on NCBI protein sequence of TCONS_00064474-protein >TCONS_00064474-protein ID=TCONS_00064474-protein|Name=TCONS_00064474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MASNHDMYDQNGSANGDIIVFGFQKIEDFLQKRGCSHLLQHFVLQKIDDT
VASFCDDKTLLDLGLLYGDLISFKQTFRTSNDNGTSSQILHYRERAQQLS
SKLKRTHTERISTTNRPVTVKSHFEIQFGIKCLEKKKYVHKLNKTMTFQV
VRSATYDQLHKICRQKFKIADSIESFIATYTGKKIEESFKDLQDYHEKHA
KEKKKVLNLYLYVPVVYARLEFKWALEQNVESSSSD Run BLAST on NCBI transcript from alignment at scaffold_417:50310..51595- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064474 ID=TCONS_00064474|Name=TCONS_00064474|organism=Clytia hemisphaerica|type=transcript|length=1286bp|location=Sequence derived from alignment at scaffold_417:50310..51595- (Clytia hemisphaerica)
AGTTAAGCCTTTTCTGAGAAAATGTGAATTCCAACAGTCCAAAAAAAAAA
TAAACAAAACGACAAAATGGCGTCAAATCATGATATGTATGATCAGAATG
GTAGTGCAAATGGTGATATTATTGTCTTTGGTTTTCAAAAGGTAAGTTTT
ATTTGAATAAATATCTGTATTTTTTTCTTTTTAGCCTGTAATTTTTACCA
GGGGCAAGGTTGCCTGCTGCCTGGTTTGAAAAAGACTCATTTATCCAGGG
CGATGTCAATCAATCAAAGTTGATCGAATCTAATCGAATGATTAAGGTGA
TACATTGCACTACTCTGTCATACTTTTCACTCACCTTATTTCCTTTGTTT
TGCTCATGAAATTTTGATCTTTAGATTGATCTCATGTTTACAGATTGAGA
CATATGTGATCAATTACAAATCAAAACATAACAAAAATTCACTTTTGTTT
TTAAAATGTACATATCGCTATTCAGTAAAATACACAGTGCAAAGTATGGC
AAAGTAGTGTAATTTATCACCTTTCGACGGTATTCAACAAATTGGATGAA
TATATACCTTGAACGTACAATGGCTTTAACAAAAAATCACAAAGTAAGTA
AATAAGTATATTATAAACCTCGATATTCACACATTTCCTCTTTTTTTTTT
TAGATTGAAGATTTTCTACAAAAACGGGGTTGTTCGCATTTGCTCCAACA
TTTCGTACTTCAGAAAATAGACGACACTGTTGCCTCATTCTGTGATGACA
AAACCCTACTCGATTTGGGTTTATTGTATGGTGATTTAATTTCATTCAAA
CAAACATTTCGCACTTCAAATGACAATGGCACAAGCTCCCAAATTTTGCA
CTACAGAGAAAGGGCTCAGCAGTTGAGTTCCAAACTGAAACGAACCCATA
CAGAACGAATAAGCACAACCAACCGACCAGTGACCGTTAAAAGTCACTTC
GAAATCCAATTTGGCATCAAATGTCTCGAGAAAAAAAAATATGTTCATAA
ACTGAACAAAACAATGACTTTTCAAGTGGTAAGGTCAGCCACATATGATC
AACTTCATAAAATATGTAGACAGAAATTCAAAATTGCAGATAGTATTGAA
TCATTTATTGCTACATATACTGGAAAGAAAATAGAAGAGTCCTTTAAAGA
TTTGCAAGACTATCATGAGAAACATGCTAAAGAGAAAAAAAAAGTGCTCA
ATTTATATTTATATGTGCCCGTGGTTTATGCAAGACTCGAGTTTAAGTGG
GCATTAGAACAAAATGTTGAAAGCTCGTCATCAGAT Coding sequence (CDS) from alignment at scaffold_417:50310..51595- >TCONS_00064474 ID=TCONS_00064474|Name=TCONS_00064474|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at scaffold_417:50310..51595- (Clytia hemisphaerica)
ATGGCGTCAAATCATGATATGTATGATCAGAATGGTAGTGCAAATGGTGA
TATTATTGTCTTTGGTTTTCAAAAGATTGAAGATTTTCTACAAAAACGGG
GTTGTTCGCATTTGCTCCAACATTTCGTACTTCAGAAAATAGACGACACT
GTTGCCTCATTCTGTGATGACAAAACCCTACTCGATTTGGGTTTATTGTA
TGGTGATTTAATTTCATTCAAACAAACATTTCGCACTTCAAATGACAATG
GCACAAGCTCCCAAATTTTGCACTACAGAGAAAGGGCTCAGCAGTTGAGT
TCCAAACTGAAACGAACCCATACAGAACGAATAAGCACAACCAACCGACC
AGTGACCGTTAAAAGTCACTTCGAAATCCAATTTGGCATCAAATGTCTCG
AGAAAAAAAAATATGTTCATAAACTGAACAAAACAATGACTTTTCAAGTG
GTAAGGTCAGCCACATATGATCAACTTCATAAAATATGTAGACAGAAATT
CAAAATTGCAGATAGTATTGAATCATTTATTGCTACATATACTGGAAAGA
AAATAGAAGAGTCCTTTAAAGATTTGCAAGACTATCATGAGAAACATGCT
AAAGAGAAAAAAAAAGTGCTCAATTTATATTTATATGTGCCCGTGGTTTA
TGCAAGACTCGAGTTTAAGTGGGCATTAGAACAAAATGTTGAAAGCTCGT
CATCAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064474-exon-scaffold_417-1575043694:51455..51595 | TCONS_00064474-exon-scaffold_417-1575043694:51455..51595 | Clytia hemisphaerica | exon |
| TCONS_00064474-exon-scaffold_417-1575043694:50310..50942 | TCONS_00064474-exon-scaffold_417-1575043694:50310..50942 | Clytia hemisphaerica | exon |
| TCONS_00064474-exon-scaffold_417-1510915933:51455..51595 | TCONS_00064474-exon-scaffold_417-1510915933:51455..51595 | Clytia hemisphaerica | exon |
| TCONS_00064474-exon-scaffold_417-1510915933:50310..50942 | TCONS_00064474-exon-scaffold_417-1510915933:50310..50942 | Clytia hemisphaerica | exon |
| TCONS_00064474-exon-scaffold_417-1491911889:51455..51595 | TCONS_00064474-exon-scaffold_417-1491911889:51455..51595 | Clytia hemisphaerica | exon |
| TCONS_00064474-exon-scaffold_417-1491911889:50310..50942 | TCONS_00064474-exon-scaffold_417-1491911889:50310..50942 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_417 | supercontig | scaffold_417:50310..51595 - |
Blast
The following BLAST results are available for this feature:
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