TCONS_00064692 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00064692
Unique Name	TCONS_00064692
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1114

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_421:45811..51245+
coding sequence from alignment at scaffold_421:45811..51245+

transcript sequence

>TCONS_00064692 ID=TCONS_00064692|Name=TCONS_00064692|organism=Clytia hemisphaerica|type=transcript|length=1114bp
AAATCTTTATGTTGATGCTTTACAGGAGAGTTTTAACAATGTCTGGAGAT
TAAGAGCGGATCAAGGATACTTGAATGGATACAGGAAACTCTTTacaaaa
cgaaaaataaatgATCCACAGAGCTATTGCGGTGATGCAGAAAGAATACA
AGTTTAAGATGCAGAAACACGTTATTTATGTTTTAACAACTGCGGTTGAG
AGCTTTATCTTCCATATAAGGCTAAAAAGCCTCCGGACACCCTCCTTCTT
CGCATATGGCGGTTACTCACCGTTCGAGTCTGACTACCAAAAGAATGATT
TCCAAAACAAGGACTACCCTGAGGATCACAACGATAATGACAGATTCTAT
GAAGAGTTCAAGCAGTCAAATTCTGCCATTGAGAGTGATCAAATTCAAGA
AGCATTCGACTTTGATGAGTACGAAAGAGAATTGAAATGCGCTGATAGAT
ACTCCAACTGTGCAAGTTACGCGTGGGTTTGCAAGAAAACAGGATCCAGT
TACAGAAGTTTCCAGCAAGGTTGTCGAAAGACATGTGGATTTTGCAAACC
TGACGCGCCACCAGcttACGTAAGCGCTCGACCGGGAATATCACTTTCTA
AAAAAAGAGATATTATGAAAGCCTGTTTGGATGCACACAATGCTAAACGA
AGACTTCACCAACATACACCAAGTATGATATACAGTCAGAAGCTGGCTGA
TCGAGCCCAAACATATGCTGAATATTTGAGGGATACAGATAAGTTCGATC
ACGATGACTTTAGAGGATATGGATTTGACAAAAGTATCGGAGAAAATCTC
TATTGGTCATCATCCAGAATTAGAACACCTGAAGACGCTGTTGCTTCTTG
GTACAATGAAATCAAAAACTACAACTTCAGAACTAGCGCATCCAACGGTG
GCGTTATCGGTCATTTTACGCAATTGGTATGGCAAAGGTCTAATATTTTG
GGATGTGGTGTGGCTACCTCTTCAAAAGGAACCTGGATAGTTGCTCGATA
CGAACCAGCTGGTAACACTAGAGGTGCATACAAAGCAAATGTTCATCCAT
TGAAAGTAACCAGTGGTGATGCTTTCTTTGATAACAAAGATGAGATAATT
TTGTAAGAAAGACT

Run BLAST on NCBI

protein sequence of TCONS_00064692-protein

>TCONS_00064692-protein ID=TCONS_00064692-protein|Name=TCONS_00064692-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
MIHRAIAVMQKEYKFKMQKHVIYVLTTAVESFIFHIRLKSLRTPSFFAYG
GYSPFESDYQKNDFQNKDYPEDHNDNDRFYEEFKQSNSAIESDQIQEAFD
FDEYERELKCADRYSNCASYAWVCKKTGSSYRSFQQGCRKTCGFCKPDAP
PAYVSARPGISLSKKRDIMKACLDAHNAKRRLHQHTPSMIYSQKLADRAQ
TYAEYLRDTDKFDHDDFRGYGFDKSIGENLYWSSSRIRTPEDAVASWYNE
IKNYNFRTSASNGGVIGHFTQLVWQRSNILGCGVATSSKGTWIVARYEPA
GNTRGAYKANVHPLKVTSGDAFFDNKDEIIL

Run BLAST on NCBI

transcript from alignment at scaffold_421:45811..51245+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00064692 ID=TCONS_00064692|Name=TCONS_00064692|organism=Clytia hemisphaerica|type=transcript|length=5435bp|location=Sequence derived from alignment at scaffold_421:45811..51245+ (Clytia hemisphaerica)
AAATCTTTATGTTGATGCTTTACAGGAGAGTTTTAACAATGTCTGGAGAT
TAAGAGCGGATCAAGGATACTTGAATGGATACAGGAAACTCTTTacaaaa
cgaaaaataaatgATCCACAGAGCTATTGCGGTGATGCAGAAAGAATACA
AGTTTAAGATGCAGAAACACGTTATTTATGTTTTAACAACTGCGGTTGAG
AGCTTTATCTTCCATATAAGGCTAAAAAGCCTCCGGACACCCTCCTTCTT
CGGTAAGCATAATTAAGTTATTATTAGATTCATTAGTTGATTTACTTGAT
TatcagctgacacacaacgttgtttcaacgtcaatCTAATgtccacaacg
tccatataacgttagaatacaacgttgtgtgccagctatgTATAGTTATA
AAAACGGAGTGTTTATCAAAGTCGAAATCACCTCTTACTCAACTGTTCAA
GGAGGAGGTTGTTTTGCTGCACAGAATGGCAAAAATGCAGATCATTTTTT
TGTTACTAGCTCTCATTCATGCTACTACTGCCAAAGGTaacttattcaat
ttttgtttgTGATTGGGCTTAAGCGATTTTATCGCCGGCGTTGAtataat
accgagtttatgtataagtgtttttctgcgacggagacggtgaggttcta
atttgactagatcctgaccagctgaggacgaagGTAAATCatcactttta
ccgtcctcgattttgcgagtcaaaactgcgggttattccaaatcgcttca
gtcactccgccgtcctcaaaattgcaaatacataaactcgcgaATTTTCA
CACCCCGGTcttacagccccggtggaattttttcccACAGTAGTagggat
aaatttttttatcgaaatcccaatgggagtagaaattatattgttcccga
gcttaaaatatccagtagggatggttttggaCAGCAATTTCttgcattga
atttcgaatggggatggtATAtgccaaagtcaatttcccattggggctga
aattgtagtgTTCTGTCCatcggggacaaaattttggcccAGCGGGTATG
TGACACAGGGGTTTATTTTCGAATTAAAAGAGGGATCGTTCGCTAATATT
GTATACGATTTTCTTAAATATGAAAGTGTATAGTATTTATTAGAATGTTT
AGGTGTCTTGGTAACTAAAGGATCTTAACGGACGATTCTAAAATATATAT
GTGTTTACGGAAAAGCTAGCGGCGGAAGAGTCAGGAACAACCACTTTAGA
ATTTAAACTCCCTCTTCACAGACTGGGACCtctttcccactggaaaaatt
gtccaagaTATCGTCCCCAGTTGAAAATTATACTCACCCTTTGCGGgtgt
tgatttttgattttggaaccCTTATAGGAACTCaatttgttttaaatggt
ttttgtaccccttggaaggactttcgagggtgtgaaagagggacccttat
ggctcgcacatacctggcacccattttgcctaaaaactcCTCCCCCCCGG
GGGCCCCAGTGATacttgtgagaagggggtgtttgcTAATTACTTCAGAT
CTCTTCTAGGATTTAGATATAAACTTGACTGAGAATGTTTCATTTATTGA
TTTCAGCATATGGCGGTTACTCACCGTTCGAGTCTGACTACCAAAAGAAT
GATTTCCAAAACAAGGGTGAgattttgattacaaaaataattCCTTGAAA
TGACAATGAACCGTACTTACGGCTATTTTTCCAAAAGCGAACTCAACATT
TAAATCGTTTTTCTGAGCGCGTTGATTGGTCAATTATAtcagaatttcaa
aatgaatgtTGAGCCAGACTTTTGGAAAGATAGCCGCATACTTATGGAAT
ATATCGGAATTTGAAAGGGAAATCCCATcataaaagttaactttctaCAT
GGAATATAAGAGCTAGATTTTTTTGTGTAGTGATGGTGATTTCCCTAATG
ACTGTAAACTTAATTGATGAATATTTATGGTGcataccgagtttatcgtt
ctacatctgttGGCTTAAAAACCAGACAGgatgttagggaaatatggcga
tagactctctaccttcactcatatATCATTTTCTCTCAatccggctgata
atcgaagtatcgattgacTATCTATCTATTTCTACATCTGTAATTTGAGC
TTTATGAAGCTCATTAAATGTATTCTAAATTCAAAACGTCATGTTGATGC
TCCTATTTTACTTAGACTACCCTGAGGATCACAACGATAATGACAGATTC
TATGAAGAGTTCAAGCAGTCAAGTATGTCGAATGATATTTCAATACGATC
CACGGGTTTCGGATTAAATCTAGCTAGCTACCATCTGTTTTGTTGAGata
catgtttttatttacCAAGCAAGTGTCtttgccccttggtcaggctcctg
tatgcttaagttttcaaagcatccaggcatagctatacttatgattcacc
ccgagtcaagtttttagtaaaatttcagaaatgttgtaaaaatttgttca
gattttgggagcagtgggaTGTaactagccgtggaatgtcttttttttac
ttgaccattACCAGACCTTTTAAAAACAGatgaaaaaatgacaacttgaa
aaatatttcaggctggaatatatgcttaagaattctgcaaatctgagcct
ttatatgcttataaacgttatgcttataaaaatacatGTAATAATATTGC
CAGGAGACTTCTTTTTCAGAAGGATAGTCTTTATTTCAGTGTTGCCGtag
aaataagaacaggataagaacaatttggaggctcaaaatccaaaaataat
gaGAACAGCTGAGCCTAAAAAAAACTAATCTTATGAAAAAGGGGAATAGT
TTTTTAATAGATATTTtcatctctctctctctctcttgaAGATTCTGCCA
TTGAGAGTGATCAAATTCAAGAAGCATTCGACTTTGATGAGTACGAAAGA
GAATTGAGTAAGTCTTTTTCAGTGGTCagcaaatttttccattttgaatt
ataactgaaaaccttaagggttgatttttttgctcaaatttactcatatt
tggctaaattttctttgcactgtaagggtaatTGTGGGCCGCACGTAGGG
TCGTTTTTGAATAGAGTGCCCCCCCAGATCAAATGCTtcttaattcgaac
aagttttccccgtccctttagttaacaatgccttatttATTatccttaaa
tcgaacaaaCTTTGGGTCCCTTGGTTATGGAGGctttgttgtattttttt
tcttcacttttatCTTATTCTAAAGAATGCGCTGATAGATACTCCAACTG
TGCAAGTTACGCGTGGGTTTGCAAGAAAACAGGATCCAGTTACAGAAGTT
TCCAGCAAGGTTGTCGAAAGACATGTGGATTTTGCAAACCTGACGCGCCA
CCAGGTAgattattgggcttttccagaaagaatTTGACATGGACATGATG
ACTTTTGACTCCTGGACAGCAGGGAGTCTTAAATTCTTCATGTTTTTGAG
TAGATGCACTTCAATCCCTATTCGGGAAAAAAAGCAAGGTTGAGTATAAT
TTAAATTCCAAAAGCTTCTAAAGAAGTTTCCCTGcaagaaagtttgaaat
aacGGCTTAGATACTTACGCGACCTATTGGGCCattgaagaattttttaa
acGTTATTACGCTGTAGTTAGCAATATATAAACTTAGAGTTAAAATTTCC
ATTCTTAGACTTAAGTCACCCCCGAGGCCTTAAACAattctctttttcat
tttcagcttACGTAAGCGCTCGACCGGGAATATCACTTTCTAAAAAAAGA
GATATTATGAGTAAGTATATATACTTTTTCCATAATACAATTTACCTTGG
ATGCTAGACCATTAGAGCcccctctcaccaacttttgctcgttctcctag
gCAGCTCCTATTTAAGCAAACGCTTACCACTTTTATGTATTATGTCTGTC
CTGTGACATGATTAATTagcagactagtttgctagtctacagAATGAAGA
AGGGGTTCCAGCCGCCATGAAGGAGGCGTTTAGCAAAGGGAGTTCGTACA
GAAACTGTTCTGATGAGAAACTTTGTTATAATTTCTATCAATAGAAGCCT
GTTTGGATGCACACAATGCTAAACGAAGACTTCACCAACATACACCAAGT
ATGATATACAGTCAGAAGCTGGCTGATCGAGCCCAAACATATGCTGAATA
TTTGAGGGATACAGATAAGTTCGATCACGATGACTTTAGAGGATATGGAT
TTGACAAAAGTATCGGAGAAAATCTCTATTGGTCATCATCCAGAATTAGA
ACACCTGAAGACGCTGTTGCTTCTTGGTATGTTAAGATAAAACGAAATAC
TTTTttcccgagggggggggggggactaggtttgcgaggtgatgggtcca
aaaatcgaaaattgacccttagagagatggAAAATTGGCGTTTTTGTGAC
CCTTAAAGAgatctttctcaaaattttcttttgaatggtttttgtacccc
tttgagaggctttcgagggtgtgaaaaagggacccttatggcgcTGGCAC
CCATTTTACCTAAGTACTCCCCCCCGGGACTTTTTTCGTGTAATGGTTTT
CTGTGCGTCTTAAAAACCTagtaaaacaacaatttttatcCTCACTTACC
TTTGAAGGACCAGCATAAAGTGGAATataatttagatattttattggtag
aaaattcttagaaaatCCGTTGGTAAataatttcatcacttttttttACC
GATGAACAGTTTTTGCCGATGAAAGACTGAGTTGTTTTAGCATTTTCTAC
CGTGATTCATCTGATATGTCACGGTCAAGTTTTTCCCCTAAAGTTTCTTG
ATTGTCTTTTAATAAAAACTTACTGAATTCTCTTTCTAAGATCGTTGGAT
AGTTTAATTGAGCTACCGATATGTCACGGTcaagtttttaaactttttcc
cAACATTTTCTTGATTTGAGAAGACAAGTTAATCAAATATGGGCGAAGTC
TCAGCTTTGAGATGTGattcaaaccaaaccaaaccaaaccTTTTAATAAA
AACTTATCGGATTCTCTTTCTaagatttttggatattttaaaTGAAGAAC
TACTTGCTaaggaaaaaaatcattacATTAATTTCTCCAAACTCTTTTAT
TCGACTGTTTTTCTCCTTCAGGTACAATGAAATCAAAAACTACAACTTCA
GAACTAGCGCATCCAACGGTGGCGTTATCGGTCATTTTACGCAATTGGTA
TGGCAAAGGTCTAATATTTTGGGATGTGGTGTGGCTACCTCTTCAAAAGG
AACCTGGATAGTTGCTCGATACGAACCAGCTGGTAACACTAGAGGTGCAT
ACAAAGCAAATGTTCATCCATTGAAAGTAACCAGTGGTGATGCTTTCTTT
GATAACAAAGATGAGATAATTTTGTAAGAAAGACT

Coding sequence (CDS) from alignment at scaffold_421:45811..51245+

>TCONS_00064692 ID=TCONS_00064692|Name=TCONS_00064692|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_421:45811..51245+ (Clytia hemisphaerica)
atgATCCACAGAGCTATTGCGGTGATGCAGAAAGAATACAAGTTTAAGAT
GCAGAAACACGTTATTTATGTTTTAACAACTGCGGTTGAGAGCTTTATCT
TCCATATAAGGCTAAAAAGCCTCCGGACACCCTCCTTCTTCGCATATGGC
GGTTACTCACCGTTCGAGTCTGACTACCAAAAGAATGATTTCCAAAACAA
GGACTACCCTGAGGATCACAACGATAATGACAGATTCTATGAAGAGTTCA
AGCAGTCAAATTCTGCCATTGAGAGTGATCAAATTCAAGAAGCATTCGAC
TTTGATGAGTACGAAAGAGAATTGAAATGCGCTGATAGATACTCCAACTG
TGCAAGTTACGCGTGGGTTTGCAAGAAAACAGGATCCAGTTACAGAAGTT
TCCAGCAAGGTTGTCGAAAGACATGTGGATTTTGCAAACCTGACGCGCCA
CCAGcttACGTAAGCGCTCGACCGGGAATATCACTTTCTAAAAAAAGAGA
TATTATGAAAGCCTGTTTGGATGCACACAATGCTAAACGAAGACTTCACC
AACATACACCAAGTATGATATACAGTCAGAAGCTGGCTGATCGAGCCCAA
ACATATGCTGAATATTTGAGGGATACAGATAAGTTCGATCACGATGACTT
TAGAGGATATGGATTTGACAAAAGTATCGGAGAAAATCTCTATTGGTCAT
CATCCAGAATTAGAACACCTGAAGACGCTGTTGCTTCTTGGTACAATGAA
ATCAAAAACTACAACTTCAGAACTAGCGCATCCAACGGTGGCGTTATCGG
TCATTTTACGCAATTGGTATGGCAAAGGTCTAATATTTTGGGATGTGGTG
TGGCTACCTCTTCAAAAGGAACCTGGATAGTTGCTCGATACGAACCAGCT
GGTAACACTAGAGGTGCATACAAAGCAAATGTTCATCCATTGAAAGTAAC
CAGTGGTGATGCTTTCTTTGATAACAAAGATGAGATAATTTTGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040579	XLOC_040579	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00064692-protein	TCONS_00064692-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_421	supercontig	scaffold_421:45811..51245 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.888	11.1585	7.63886	7.07519	2.15573	2.18396	4.27463	5.32811	4.07003	2.65668	4.13218	3.62086	10.8121	8.93572	3.3138	4.96899	2.51316	2.42183	27.091	37.7324	0.634317	0.776178	8.0416	6.87037	4.37729	4.09445	0.425523	0.286837	3.15909	4.90728

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001283	Allrgn_V5/Tpx1
IPR014044	CAP_domain
IPR003582	ShKT_dom
IPR018244	Allrgn_V5/Tpx1_CS
IPR034113	SCP_GAPR1-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005576	extracellular region

Blast

[Close]

BLAST of TCONS_00064692 vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 1.926e-20
Identity = 58/159 (36.48%), Postives = 81/159 (50.94%), Query Frame = 3

Query:  588 ISLSKKRDIMKACLDAHNAKRRLHQHTPSMIYSQKLADRAQTYAEYLRDTDKFDHDDFRGYGFDKSIGENLYWSSSRIRTPEDAVASWYNEIKNYNFRTSASNGGVIGHFTQLVWQRSNILGCGVATSSKG-TWIVARYEPAGNT--RGAYKANVHPLK 1055
            +  S  +      L AHN  R+ H   P +   + L   AQ Y+E L  T    H      G     GENL W+S   +T ++    WY+EIKNYNF+      G  GHFT +VW+ +  +G G A++S G +++VARY PAGN    G ++ NV P K
Sbjct:    1 MGKSASKQFHNEVLKAHNEYRQKHG-VPPLKLCKNLNREAQQYSEALASTRILKHSPESSRG---QCGENLAWASYD-QTGKEVADRWYSEIKNYNFQQPGFTSGT-GHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENVLPPK 153

The following BLAST results are available for this feature:

BLAST of TCONS_00064692 vs. Swiss-Prot (Human)

BLAST of TCONS_00064692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GAPR1	1.926e-20	36.48	Golgi-associated plant pathogenesis-related protei...	[more]

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TCONS_00064692 (transcript) - C. hemisphaerica