TCONS_00064707 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064707
Unique NameTCONS_00064707
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1172

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064707 ID=TCONS_00064707|Name=TCONS_00064707|organism=Clytia hemisphaerica|type=transcript|length=1172bp
tgtattttttaatacgtcgttcattaactcaaatcaaatgactttggagg
tttggtgaaatggtggccgaattgccgtcccatgttttgtcagatagtcc
caagccaaGACGCAAGCAATGGAGATCATTCTGGTCATTATCACCAAACA
GGGAACATCCAAAACCTTCAAAATATCCTGATTCAACAATATCCCTTGGT
GTCTTCTGGATCCCAACACATTCCATATTCCACTTCAAATAATGATGGAA
CATTTCATTCTACTTTTCAACATTCTAGTGGAGCTCAAGGTTTCACTGTT
GGTGGATCGAATTATGTCAGTACTGACTTCATGTCACAATCTGCTGCTCT
CCAGCAACAAACAGAAAATTCCTCCCAACAACAAAACCAACGACAACTCA
ATAATGaatcacaacaacaacaacaacaacaacaacaacaacttcaACAA
ATTCATCACCAGCAACAATTACAACAGcAGATTCAACATGTGCAAGCACA
GCAACAGCAAATGTCTCAACAACAATCGCAACAAATTATTGCAACAACAC
CTGATAAACATTCTTCAATGAATAGCCAGTTGGATACAAGTCAAAGCACA
GCTTCAACCAAATCGATGGATGAAAATGAATCCTCTGACGAAGACATACA
CCAATGTGGGCGTTGCAAAGTTGTTTTCCATGATGTCACGGCTTACTTGA
AACACAAACAATCTAAAGCTTGTAAAACCATTAAAAGCAGTTCACCGAAC
AAACAACAAGCATCACCAACCAAAACACCTCAACAGCAATACTCAAGCAG
TGGAGATACTCAGCAATCACAAGTCCAACCTATGGGAAACGAacaaataa
caacaacaacccAGCAGCAACAGCAGCAAcagcagcagcagcagcagCAA
CAGCAgcagcaacaacaacagcagcagCATCAGCAGTCTCAATCCCAAac
agaaaacaaccaaaacattCTAGAAGCTGCAGCCAAGAATACCATATTCC
GTGATTCTTTCATCTCCATTAGAAACGAGATTCAAGATATTGGTACCGAG
AAACGGGGAGTTGAGGAAAATGAACCTCAATACACTTCTGAAGACTTATG
GAGCAAAGAGAAAACTGGTGATGATATTTTGCTTTCCCAGGAAGACATTG
TTGACGAAGCTGGTAAAAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00064707-protein

>TCONS_00064707-protein ID=TCONS_00064707-protein|Name=TCONS_00064707-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
MFCQIVPSQDASNGDHSGHYHQTGNIQNLQNILIQQYPLVSSGSQHIPYS
TSNNDGTFHSTFQHSSGAQGFTVGGSNYVSTDFMSQSAALQQQTENSSQQ
QNQRQLNNESQQQQQQQQQQLQQIHHQQQLQQQIQHVQAQQQQMSQQQSQ
QIIATTPDKHSSMNSQLDTSQSTASTKSMDENESSDEDIHQCGRCKVVFH
DVTAYLKHKQSKACKTIKSSSPNKQQASPTKTPQQQYSSSGDTQQSQVQP
MGNEQITTTTQQQQQQQQQQQQQQQQQQQQQQHQQSQSQTENNQNILEAA
AKNTIFRDSFISIRNEIQDIGTEKRGVEENEPQYTSEDLWSKEKTGDDIL
LSQEDIVDEAGKK
Run BLAST on NCBI

transcript from alignment at scaffold_421:149359..152353-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064707 ID=TCONS_00064707|Name=TCONS_00064707|organism=Clytia hemisphaerica|type=transcript|length=2995bp|location=Sequence derived from alignment at scaffold_421:149359..152353- (Clytia hemisphaerica)
TGTATTTTTTAATACGTCGTTCATTAACTCAAATCAAATGACTTTGGAGG
TTTGGTGAAATGGTGGCCGAATTGCCGTCCCATGTTTTGTCAGATAGTCC
CAAGCCAAGTTAGAGCAGTTGACGGTAGCTTATAGAATAATGACCTCATT
GTGATCTTAAATATTACTAAACACGTCTGGTAAATAATTCTGTGACTGTT
GGTAGGGCGTTTTGGAGTTATCCAGGTTTTATATGAAGGAATAAAATCAG
TTTGGGATTATTCGCTCAATTTAAATTTTTATGTGTCATCAGCTACTCGT
CTATATACAAATAATCAATTCTGTCGAGATCCTCTGAATAATCAAACATC
ATTGCATCAAACAGTTTATCATTGCCTCTGCTTGTAATTTCTCTTTAACC
TTGCCTATTGCTATCAAATTGAATCTGTTTATTTGTTCATAACATTGTTC
ATTATCTCTATGTTAGGACGCAAGCAATGGAGATCATTCTGGTCATTATC
ACCAAACAGGGAACATCCAAAACCTTCAAAATATCCTGATTCAACAATAT
CCCTTGGTGTCTTCTGGATCCCAACACATTCCATATTCCACTTCAAATAA
TGATGGAACATTTCATTCTACTTTTCAACATTCTAGTGGAGGTATATTTG
ATCGAAGCATTGTTTTTGAGAGTACAGCAGTGCATTTACTTTTCGTGTTA
TGTCTGGTTATGTAAGAAGAAAATGATTAAAAGTGGTTCAAGTAGTTATT
GGACATTTTAAAAACATGTCACAACAATTCACTCATTTCATGTTTATGAC
TTTTTGCACAAAGATCTTTACTTGCCAATTTCTCCACGCATAAGGTGAAG
GAGCCCAATATTTAAAAAGTTGGGATTAATTCAAAATTAGAAACCTTTCT
GAAGTTGTGAAGAGAATCTGTCAATTTCAAAATCTCTTGTCATTTTAATA
AAATCAAAAGCCTTTTCATATTTCAATCTTCTTTCTCTGATTTTCAGCTC
AAGGTTTCACTGTTGGTGGATCGAATTATGTCAGTACTGACTTCATGTCA
CAATCTGCTGCTCTCCAGCAACAAACAGAAAATTCCTCCCAACAACAAAA
CCAACGACAACTCAATAATGAATCACAACAACAACAACAACAACAACAAC
AACAACTTCAACAAATTCATCACCAGCAACAATTACAACAGGTATAGAGT
ATACATATTCTGAGGTTAACTTATTTTGCANACAACAACAACAACAACTT
CAACAAATTCATCACCAGCAACAATTACAACAGGTATAGAGTATACATAT
TCTGAGGTTAACTTATTTTGCACGATTTTGCAGATTCTTCAAAGAACTTC
CTGTAGTCTTCAAAGTCTGAGCAGAAATGACACCTAGGTTTTATCTTAAT
TCATATTACAGCTAAGATTAACCATCCACACAGAAGTGCCCTATAATTTC
AACATAATTCGTGTCAGTATGCCAGAGCATATCCAGGCATATCAGTGACA
ACCAAACTTACTTGATTGAATCTTTGTATTATTGCAACTTTCTGTCTTAA
GACAGAAACCCGTCTAGTTGAGAGGCATTTCATTTCTGTCTTCTCAGTAA
GATGGTTTTTTTTGTTCAATAATTATCACCAAGCCTAATTGTAACACTGG
ATAATTTTTTTTTTAATTTACAGCAGATTCAACATGTGCAAGCACAGCAA
CAGCAAATGTCTCAACAACAATCGCAACAAATTATTGCAACAACACCTGA
TAAACATTCTTCAATGAATAGCCAGTTGGATACAAGTCAAAGCACAGCTT
CAACCAAATCGATGGATGAAAATGAATCCTCTGGTATGTATGTTTACGCC
ACTTTACCAGGGAAGCTATNGATACAAGTCAAAGCACAGCTTCAACCAAA
TCGATGGATGAAAATGAATCCTCTGGTATGTATGTTTACGCCACTTTACC
AGGGAAGCTATTAGTCCCATTGTGAAATCCAACCTTAGGCACCCCTCCTT
TGGCTCATCACTAAAACGCTTGGTAAGGGATCAGAAGGTTCATTACAGCA
TTGATTCTGGTGAGGGTTTAAGCATGTTTTGAGAGAATATCTCTATCGAA
ATTATTGAGATAATGAACTACATGCTTTTTATAAGAATAACTTCTAAAAT
AATATGAGGGTGAGATTTAGGAGTTAGAACGATGTGCCTTGATTGGAACA
ATTGAAAAATAAGAATAATGCCACGCTCAGACAAAAAACACTATTCTTAT
AAAAAAGCGTGTATTTGGTAAGGCTCAAACTATCAATCCGAAAAGTAAGG
CAACTGTAGCCTAAACAGAAAGGAAATATCTCTTGCTTTGAATTTTTTAA
CCATATAAAACTTGTCCTGACCTATCGGCAAATTTTCGCACAGTTCCGTC
CTTTTTGAGGTTGGTCTCACTGCTAATTTTTTATTCATTCAATCATTCAT
TACATTTCAGACGAAGACATACACCAATGTGGGCGTTGCAAAGTTGTTTT
CCATGATGTCACGGCTTACTTGAAACACAAACAATCTAAAGCTTGTAAAA
CCATTAAAAGCAGTTCACCGAACAAACAACAAGCATCACCAACCAAAACA
CCTCAACAGCAATACTCAAGCAGTGGAGATACTCAGCAATCACAAGTCCA
ACCTATGGGAAACGAACAAATAACAACAACAACCCAGCAGCAACAGCAGC
AACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAACAGCAGCAG
CATCAGCAGTCTCAATCCCAAACAGAAAACAACCAAAACATTCTAGAAGC
TGCAGCCAAGAATACCATATTCCGTGATTCTTTCATCTCCATTAGAAACG
AGATTCAAGATATTGGTACCGAGAAACGGGGAGTTGAGGAAAATGAACCT
CAATACACTTCTGAAGACTTATGGAGCAAAGAGAAAACTGGTGATGATAT
TTTGCTTTCCCAGGAAGACATTGTTGACGAAGCTGGTAAAAAAAG

Coding sequence (CDS) from alignment at scaffold_421:149359..152353-

>TCONS_00064707 ID=TCONS_00064707|Name=TCONS_00064707|organism=Clytia hemisphaerica|type=CDS|length=1089bp|location=Sequence derived from alignment at scaffold_421:149359..152353- (Clytia hemisphaerica)
ATGTTTTGTCAGATAGTCCCAAGCCAAGACGCAAGCAATGGAGATCATTC
TGGTCATTATCACCAAACAGGGAACATCCAAAACCTTCAAAATATCCTGA
TTCAACAATATCCCTTGGTGTCTTCTGGATCCCAACACATTCCATATTCC
ACTTCAAATAATGATGGAACATTTCATTCTACTTTTCAACATTCTAGTGG
AGCTCAAGGTTTCACTGTTGGTGGATCGAATTATGTCAGTACTGACTTCA
TGTCACAATCTGCTGCTCTCCAGCAACAAACAGAAAATTCCTCCCAACAA
CAAAACCAACGACAACTCAATAATGAATCACAACAACAACAACAACAACA
ACAACAACAACTTCAACAAATTCATCACCAGCAACAATTACAACAGCAGA
TTCAACATGTGCAAGCACAGCAACAGCAAATGTCTCAACAACAATCGCAA
CAAATTATTGCAACAACACCTGATAAACATTCTTCAATGAATAGCCAGTT
GGATACAAGTCAAAGCACAGCTTCAACCAAATCGATGGATGAAAATGAAT
CCTCTGACGAAGACATACACCAATGTGGGCGTTGCAAAGTTGTTTTCCAT
GATGTCACGGCTTACTTGAAACACAAACAATCTAAAGCTTGTAAAACCAT
TAAAAGCAGTTCACCGAACAAACAACAAGCATCACCAACCAAAACACCTC
AACAGCAATACTCAAGCAGTGGAGATACTCAGCAATCACAAGTCCAACCT
ATGGGAAACGAACAAATAACAACAACAACCCAGCAGCAACAGCAGCAACA
GCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAACAGCAGCAGCATC
AGCAGTCTCAATCCCAAACAGAAAACAACCAAAACATTCTAGAAGCTGCA
GCCAAGAATACCATATTCCGTGATTCTTTCATCTCCATTAGAAACGAGAT
TCAAGATATTGGTACCGAGAAACGGGGAGTTGAGGAAAATGAACCTCAAT
ACACTTCTGAAGACTTATGGAGCAAAGAGAAAACTGGTGATGATATTTTG
CTTTCCCAGGAAGACATTGTTGACGAAGCTGGTAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040588XLOC_040588Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064707-exon-scaffold_421-1575043694:152246..152353TCONS_00064707-exon-scaffold_421-1575043694:152246..152353Clytia hemisphaericaexon
TCONS_00064707-exon-scaffold_421-1575043694:151713..151887TCONS_00064707-exon-scaffold_421-1575043694:151713..151887Clytia hemisphaericaexon
TCONS_00064707-exon-scaffold_421-1575043694:151163..151356TCONS_00064707-exon-scaffold_421-1575043694:151163..151356Clytia hemisphaericaexon
TCONS_00064707-exon-scaffold_421-1575043694:150521..150680TCONS_00064707-exon-scaffold_421-1575043694:150521..150680Clytia hemisphaericaexon
TCONS_00064707-exon-scaffold_421-1575043694:149359..149893TCONS_00064707-exon-scaffold_421-1575043694:149359..149893Clytia hemisphaericaexon
TCONS_00064707-exon-scaffold_421-1510915933:152246..152353TCONS_00064707-exon-scaffold_421-1510915933:152246..152353Clytia hemisphaericaexon
TCONS_00064707-exon-scaffold_421-1510915933:151713..151887TCONS_00064707-exon-scaffold_421-1510915933:151713..151887Clytia hemisphaericaexon
TCONS_00064707-exon-scaffold_421-1510915933:151163..151356TCONS_00064707-exon-scaffold_421-1510915933:151163..151356Clytia hemisphaericaexon
TCONS_00064707-exon-scaffold_421-1510915933:150521..150680TCONS_00064707-exon-scaffold_421-1510915933:150521..150680Clytia hemisphaericaexon
TCONS_00064707-exon-scaffold_421-1510915933:149359..149893TCONS_00064707-exon-scaffold_421-1510915933:149359..149893Clytia hemisphaericaexon
TCONS_00064707-exon-scaffold_421-1491911889:152246..152353TCONS_00064707-exon-scaffold_421-1491911889:152246..152353Clytia hemisphaericaexon
TCONS_00064707-exon-scaffold_421-1491911889:151713..151887TCONS_00064707-exon-scaffold_421-1491911889:151713..151887Clytia hemisphaericaexon
TCONS_00064707-exon-scaffold_421-1491911889:151163..151356TCONS_00064707-exon-scaffold_421-1491911889:151163..151356Clytia hemisphaericaexon
TCONS_00064707-exon-scaffold_421-1491911889:150521..150680TCONS_00064707-exon-scaffold_421-1491911889:150521..150680Clytia hemisphaericaexon
TCONS_00064707-exon-scaffold_421-1491911889:149359..149893TCONS_00064707-exon-scaffold_421-1491911889:149359..149893Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064707-proteinTCONS_00064707-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_421supercontigscaffold_421:149359..152353 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.1797	31.1258	19.373	19.1417	10.0665	8.11153	19.0945	21.1447	10.6298	14.0975	12.6396	10.6909	13.6381	15.8005	10.263	14.1526	18.4583	16.2342	10.5284	10.1076	15.3319	15.9347	22.1095	21.5362	23.4565	23.7236	6.50922	5.35574	11.8341	14.5851
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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