TCONS_00064782 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00064782
Unique Name	TCONS_00064782
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	913

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_423:441235..445019-
coding sequence from alignment at scaffold_423:441235..445019-

transcript sequence

>TCONS_00064782 ID=TCONS_00064782|Name=TCONS_00064782|organism=Clytia hemisphaerica|type=transcript|length=913bp
GAGAGGTCCTTTGGGAGAATGACAAACTAAAAAACTTTGTTCTTTCGATG
GGTTACCAAGTCCAAGACGTCTTGGGTAGAGCAAGcAAATCATATCCGAT
GACCCCTAAGACTCCAGCTACACCTGGTGTAGCCAAGGCTCCTGTAACAC
CTGGTTTTACTCCTGGCTTGAAAAGAAcgCACTCTAATCAATCAATGGTG
TCAGTCAACCCTCAAAGGCCATCGCCTTTAAATAACCGTGTGGCACCTGG
TAAACCATTAGCTCGACCTGGTAGTAGTCCCATGCAACAGAGCCCCTCAC
ATCGACACATGCAACCTAGTCCTGTGGGTAGTATGATGTCAAGAAGTCGA
ACACCTGGCAACAACGCCACAAATGGAACACCAAAATCAGTGGTCGCTTC
AGGAAGAATCACTATGAGAACACCCCCGATCAATGGAAAACTTGGTCCGA
TTTCGAAATCTCCTCACCTAAGCAATCAACAGCTTCGTTCGCCTGCTTCA
AGTCAAATGATCATCAGTAACAGAACACCTGTTAACAGAGCTCCTCCGTT
CTCGTCACAGCCGCCTCCTTCATCCAGTAAAATTGGACAGAATCTCGTAA
AAGGTGGTAGTCTATCGATGATGAGGCCGCCTTCAGACGAACGAAGACCA
ATTCAActtAACACTGCACGATCATCCAGCTCTATCAAGAGGCCTGACTT
TGCTTCAACACCGAAACCGTGACCGGAAGACTTTGCACTAATAAATGATC
GGTTGGTTGCTGTCGGTAAATAGTTTATtcgagatgaaaataattatgta
TAGTGATATTCTGGTTGAGTGTAACAGTGATCATCTTAGAACGAAAATCA
GAGGTTCTCACACTATACCAATGTTCCCATCTTTGGAAGTTATAGGCTGA
AACCCaagggggg

Run BLAST on NCBI

protein sequence of TCONS_00064782-protein

>TCONS_00064782-protein ID=TCONS_00064782-protein|Name=TCONS_00064782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
EVLWENDKLKNFVLSMGYQVQDVLGRASKSYPMTPKTPATPGVAKAPVTP
GFTPGLKRTHSNQSMVSVNPQRPSPLNNRVAPGKPLARPGSSPMQQSPSH
RHMQPSPVGSMMSRSRTPGNNATNGTPKSVVASGRITMRTPPINGKLGPI
SKSPHLSNQQLRSPASSQMIISNRTPVNRAPPFSSQPPPSSSKIGQNLVK
GGSLSMMRPPSDERRPIQLNTARSSSSIKRPDFASTPKP

Run BLAST on NCBI

transcript from alignment at scaffold_423:441235..445019-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00064782 ID=TCONS_00064782|Name=TCONS_00064782|organism=Clytia hemisphaerica|type=transcript|length=3785bp|location=Sequence derived from alignment at scaffold_423:441235..445019- (Clytia hemisphaerica)
GAGAGGTCCTTTGGGAGAATGACAAACTAAAAAACTTTGTTCTTTCGATG
GGTTACCAAGTCCAAGACGTCTTGGGTAGAGCAAGGTATGTAGTTATGAG
TTGTTGTAATTTATTATTTTGAATGTTGATAGATGAATGGAAAGATTATC
TTCTTCTAGAAACCCAATTGTAATTGTTTCTTAAAAATATGTATTGGAAT
TTCTAGTAAAGTTTGTGATAGAATGTTGCAGTGCTCAATGAAGACCAGAT
CTGTATGAAAATTACAGTGGAGTCTCCATAACTCGAACACGCACGGGGAC
ACAAATCTCTAGTTCGAGTTAAGCAAGAAACTTGGTTCAAGTAAGAAACA
ATAGAAAGAAACAAAAGGATTCCAGACCGGGTTTTTTTTATACGGACTAT
ATGTTCTAAAATCCAGTACAATAAAAGTTTTATCAGAAACAATAATATTG
GTTTTTTCTTCATTTTATTTTTTTTGCAGCAAATCATATCCGATGACCCC
TAAGACTCCAGCTACACCTGGTGTAGCCAAGGCTCCTGTAACACCTGGTT
TTACTCCTGGCTTGAAAAGAAGTATGTAACATTTTTAGATCTTTTAGCGA
GACTTATTTCTGAAACACTTCACACAAAGCTAGAATATTATCCGAGCAGA
GAATAGCGATACAATTTAGTAAATGAATATTTTATCTTCGTATCTATAAG
ACCAGGTTACCTCCAATTAGTTTCGTCTTCAATGCATATCATGTTTTTAT
TTTCAAGCGCACTCTAATCAATCAATGGTGTCAGTCAACCCTCAAAGGCC
ATCGCCTTTAAATAACCGGTAAAAGTTTTTGTTGTAAACTTTGCTTTTTT
ATTTGTTATTTTATCTGAAATTTTCTCTAATTTGATGAGTCACGGTGGCA
ACAATCAATTTCCCCTGTTTCTGCAGTAATGTAAAGTAACGGACTATTAG
AGATACAATGTTCGAGTCTCAAATGACGTAATCACTTCGGCGATACTTCA
ATGCAAGTATTCTTCGTGAAAATTATTATATTATTATTTCTATCTATACT
CATTTACAGTGTGGCACCTGGTAAACCATTAGCTCGACCTGGTAGTAGTC
CCATGCAACAGAGCCCCTCACATCGACACATGCAACCTAGTCCTGTGGGT
AGTATGATGTCAAGAAGTCGAACACCTGGCAACAACGCCACAAATGGAAC
ACCAGTTCGTTACTTTTCATTCATGTCAATTAAACTAAAATTTAACCATA
GTTCTAGAGCCTGTCAATTAAAAAACTAACTTTTCAACCTTGTTTTTAAT
GACGATGCTTTGAGGAACAGACTATTGGTGCTTGTTATATTTCAACTCAT
TTTCCTAATCTACTTCAGTAGAATATTCGATCGTGATTACAATTTATTTG
TGTTTTAAATGTCTAAATGACTAGGATAGGGGATTCATCTTTCTAGAATT
TTCTCCGTGATTTTTTTCCTTTCTAGAAATCAGTGGTCGCTTCAGGAAGA
ATCACTATGAGAACACCCCCGATCAATGGAAAACTTGGTAAACATGATTT
TGTCATCGATTCTATTTTTTCTGAACTTGCCACTGTTTTTTCTTACTTAC
TTGCGAGTATTTGAGTATTTGCACTTTTGAGGATGGCGGAGTGACTGAAG
CGATTTGGAATAACCCGCAGCTTTGACCAACAAAATTGAGGACGGTAAAA
GTGCTGATTTGCCGTCGTCCTTAGTCAATTAGGAACTAGATCTAAATAAA
AAAACACATAATACAGATACGTAAACTCGCTACTTCTATCTTGATATTTG
TTCTGAAGACAGTCACCCGGAGANCACATAATACAGATACATAAACTCGC
TACTTCTATCTTGATATTTGTTCTGAAGACAGTCACCCGGAGAAAAGATC
ATTTTCAATCGTTGGTATTTTTCTTCTTTTCTGTTTTATTGATTTCGTTA
ATTTTCCTTTTTGTTTTACAGGTCCGATTTCGAAATCTCCTCACCTAAGG
TGAGTTTTAATCTTTCCAACTTTTCATTCAAATCCACCTATCGATAGTCT
AGCAAGCTAGACGACTAATTCAGACATACCGTAAATCCTCGAATAAGCGC
CCCGCTTGAATAAGCGCTCTGCTCGAATAAGCGTCCCCTTTTAGTTAAAT
ACTATTATAAGCGCCCCGCTCGAATAAGTGCCCTTCCCTTTCAATAAGCA
CCCCCTCCAGGGAGCTTATTCGAGGATTCACGGGAAGCAAAAAGTATAAG
GAGGGAATAATTTACAAACTAAATCCCGTAACATAACAATAATCGTTAAC
GCCTATAGTACTATATTACACGCATTATAAACGACTCCAGTCTAGATTTT
TATTTCTTAAATCTTCCTCTTAAATATGGAACTATTTTTCTTCCATAGCA
ATCAACAGCTTCGTTCGCCTGCTTCAAGTCAAATGATCATCAGTAACAGG
TTAGCTAGCTTGTGAACATTTTTTGGCTTTTCTTCAATGAATATAACCTA
TATCTTTTCCTAACGATCATAGCATGAAGGTCATGAATCTGGCTACGGTG
CGCAAGTTTGTGGGTTTAAACCCCAGCCGGGTCATATGTACATGATGCCT
CTCTGCTTGATGCTCAGTATCTAAAGAGATTGGTCATGGAAAAGAGTGAC
GTCCCCCTTCACCTTCGGGTAGACGAGAAAGGAGCCAACGGATCGCCCTC
AGCTGACTTGCTGACTGTTCTTAATCTGTTCCTTTTCATTTGTTTCAGAA
CACCTGTTAACAGAGCTCCTCCGTTCTCGTCACAGCCGCCTCCTTCATCC
AGTAAAATTGGACAGAATCTCGTAAAAGGTTTGTTTCTCAACAAATCTAT
CTTTAGAATAACACGTCCGTCATGTTTGAAAATTGTTTGGTTTTGAGTAC
TGCTGATAGTATAGATCGTCAATCCTGAAGAACTTTGACCACTTTGACCA
AGACAAAAAAACTCACATGACTTTATTTTGATCGATCGACATTATGTTTT
TTTATGTGTGGTATTGAATTGAATTGAATCCCAAAACTGTCGATATGGAT
TTTCTTTCCTTTCCCTTTTTAGGTGGTAGTCTATCGATGATGAGGCCGCC
TTCAGACGAACGAAGACCAATTCAAGTAAGTACTTAGTATTTCAAGAATT
TTCACTTAAATTTGTCGCTTGGTTAAATTCTATTTTCCCAATCTGCAAAG
AAAAGTCCACATGAAAATTTTCCAACTTAGAAACCTATTTTGACTGTTCT
GTTTTTTTTTTTAGCTTAACACTGCACGATCATCCAGCTCTATCAAGTTA
GTAACTTTCGCTCATTCTGTTTGCTCATTCTTACATTTTTCTACAAATGA
TTATTATACAGGATCTCATTTTGACAGCGAAGTAATTTTTTTATTTGAAC
GAGAATTAAAGTATTGGCTAATCTTTGAAAACTCACCAAATTCACCAAAA
TTAGTTTCAAAATAATTGCCAATATTCTTTAACAGTACTTAAACTGAAGG
TACCAAAAGAATAAATCCGTTCAATTTATGATCAAACTTTTCTTAAATTT
TGTCTTTCAGGAGGCCTGACTTTGCTTCAACACCGAAACCGTGACCGGAA
GACTTTGCACTAATAAATGATCGGTTGGTTGCTGTCGGTAAATAGTTTAT
TCGAGATGAAAATAATTATGTATAGTGATATTCTGGTTGAGTGTAACAGT
GATCATCTTAGAACGAAAATCAGAGGTTCTCACACTATACCAATGTTCCC
ATCTTTGGAAGTTATAGGCTGAAACCCAAGGGGGG

Coding sequence (CDS) from alignment at scaffold_423:441235..445019-

>TCONS_00064782 ID=TCONS_00064782|Name=TCONS_00064782|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_423:441235..445019- (Clytia hemisphaerica)
GAGGTCCTTTGGGAGAATGACAAACTAAAAAACTTTGTTCTTTCGATGGG
TTACCAAGTCCAAGACGTCTTGGGTAGAGCAAGCAAATCATATCCGATGA
CCCCTAAGACTCCAGCTACACCTGGTGTAGCCAAGGCTCCTGTAACACCT
GGTTTTACTCCTGGCTTGAAAAGAACGCACTCTAATCAATCAATGGTGTC
AGTCAACCCTCAAAGGCCATCGCCTTTAAATAACCGTGTGGCACCTGGTA
AACCATTAGCTCGACCTGGTAGTAGTCCCATGCAACAGAGCCCCTCACAT
CGACACATGCAACCTAGTCCTGTGGGTAGTATGATGTCAAGAAGTCGAAC
ACCTGGCAACAACGCCACAAATGGAACACCAAAATCAGTGGTCGCTTCAG
GAAGAATCACTATGAGAACACCCCCGATCAATGGAAAACTTGGTCCGATT
TCGAAATCTCCTCACCTAAGCAATCAACAGCTTCGTTCGCCTGCTTCAAG
TCAAATGATCATCAGTAACAGAACACCTGTTAACAGAGCTCCTCCGTTCT
CGTCACAGCCGCCTCCTTCATCCAGTAAAATTGGACAGAATCTCGTAAAA
GGTGGTAGTCTATCGATGATGAGGCCGCCTTCAGACGAACGAAGACCAAT
TCAACTTAACACTGCACGATCATCCAGCTCTATCAAGAGGCCTGACTTTG
CTTCAACACCGAAACCGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040624	XLOC_040624	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00064782-protein	TCONS_00064782-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_423	supercontig	scaffold_423:441235..445019 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.95036	3.90802	2.25524	1.42644	4.19422	3.45983	4.09773	4.66601	2.78413	2.56742	3.16905	2.99295	2.19213	1.86681	2.34067	4.01133	5.17621	4.10685	2.30053	2.31057	3.39174	3.12984	3.51954	3.86103	26.9747	22.6336	1.74544	2.03922	2.02476	1.79495

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00064782 vs. Swiss-Prot (Human)

BLAST of TCONS_00064782 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00064782 (transcript) - C. hemisphaerica