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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065127 ID=TCONS_00065127|Name=TCONS_00065127|organism=Clytia hemisphaerica|type=transcript|length=910bp
gacaaaatgtacaaaatttgcATGAACACCAAAGATAAAGACATGAAAAA
ACAAAGGTTTGCAAGGTtcaagaaattcaaaaacaatttaaccAAATTAC
TTAGAGCTAGTAAAACACTCTACTACAAAAATCTCTTTTCGTCCTATGGT
AGAAACTTAAGACTGATATGGAAAGGAATTCGAGAAATAACAGGGggcaa
atcaaaatcaaatgacCTCCCACAAGTCTTTATTCACAAAGGTAAATCAA
TCAAAACTGATGATAATATTGCAACCAGTTTCAATGAATATTACAGTTCT
ATAGCAGAGaaaacaaaatcgaaaattgtACCAACTGATAAACATTTTGC
TCATTTCCTACAGAGACCAAATGCACACTCAATCTTTCTCAATCCTACTA
GCCCTCTAGAAGTTCTTAATATAATCACCAAACTTAACAACAACAAGTCT
GTTGGTCCAGAAAGCATTCCAGCTGCATTCCTCAAAATCCTTGCGCCAGA
CATAAGCATTACTCTATCAAAACTCTTTAATGAAAGTCTCACCCAAGGCC
ATTTCCCTGATTGcttaaaatcagcaaaaatcacACCTGTTCATAAAAAA
GATTCTCTCATAGATCTTATAAATTATCGTCCAATATCCCTACTTTCAAA
CAttagcaaaatctttgaaaaaattctccatGATAGACTTTATAACTTCT
TAGAGAGTCACAAGATAATATTTGAGAATCAATTTGGCTTTCGAAAACAA
CACAACACTACACATGCATGTATGGCTTTAACAGAGTCAATTAGGAATGC
GCTGGATAAAGGAGAGTTTGCTACTGGAATCTTTGTGGACCTTCAAAAAG
CTTTTGACACTGTTGAACATAATATCTTGATCCAAAAACTTAACTTCTAT
GGTATCTGAG Run BLAST on NCBI protein sequence of TCONS_00065127-protein >TCONS_00065127-protein ID=TCONS_00065127-protein|Name=TCONS_00065127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
DKMYKICMNTKDKDMKKQRFARFKKFKNNLTKLLRASKTLYYKNLFSSYG
RNLRLIWKGIREITGGKSKSNDLPQVFIHKGKSIKTDDNIATSFNEYYSS
IAEKTKSKIVPTDKHFAHFLQRPNAHSIFLNPTSPLEVLNIITKLNNNKS
VGPESIPAAFLKILAPDISITLSKLFNESLTQGHFPDCLKSAKITPVHKK
DSLIDLINYRPISLLSNISKIFEKILHDRLYNFLESHKIIFENQFGFRKQ
HNTTHACMALTESIRNALDKGEFATGIFVDLQKAFDTVEHNILIQKLNFY
GI Run BLAST on NCBI transcript from alignment at scaffold_431:71036..71998+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065127 ID=TCONS_00065127|Name=TCONS_00065127|organism=Clytia hemisphaerica|type=transcript|length=963bp|location=Sequence derived from alignment at scaffold_431:71036..71998+ (Clytia hemisphaerica)
gacaaaatgtacaaaatttgcATGAACACCAAAGATAAAGACATGAAAAA
ACAAAGGTTTGCAAGGTtcaagaaattcaaaaacaatttaaccAAATTAC
TTAGAGCTAGTAAAACACTCTACTACAAAAATCTCTTTTCGTCCTATGGT
AGAAACTTAAGACTGATATGGAAAGGAATTCGAGAAATAACAGGGggcaa
atcaaaatcaaatgacCTCCCACAAGTCTTTATTCACAAAGGTAAATCAA
TCAAAACTGATGATAATATTGCAACCAGTTTCAATGAATATTACAGTTCT
ATAGCAGAGaaaacaaaatcgaaaattgtACCAACTGATAAACATTTTGC
TCATTTCCTACAGAGACCAAATGCACACTCAATCTTTCTCAATCCTACTA
GCCCTCTAGAAGTTCTTAATATAATCACCAAACTTAACAACAACAAGTCT
GTTGGTCCAGAAAGCATTCCAGCTGCATTCCTCAAAATCCTTGCGCCAGA
CATAAGCATTACTCTATCAAAACTCTTTAATGAAAGTCTCACCCAAGGCC
ATTTCCCTGATTGcttaaaatcagcaaaaatcacACCTGTTCATAAAAAA
GATTCTCTCATAGATCTTATAAATTATCGTCCAATATCCCTACTTTCAAA
CAttagcaaaatctttgaaaaaattctccatGATAGACTTTATAACATTT
GAGAATATTTGAGAATCAATTTGGCTNTCTCCATGATAGACTTTATAACT
TCTTAGAGAGTCACAAGATAATATTTGAGAATCAATTTGGCTTTCGAAAA
CAACACAACACTACACATGCATGTATGGCTTTAACAGAGTCAATTAGGAA
TGCGCTGGATAAAGGAGAGTTTGCTACTGGAATCTTTGTGGACCTTCAAA
AAGCTTTTGACACTGTTGAACATAATATCTTGATCCAAAAACTTAACTTC
TATGGTATCTGAG Coding sequence (CDS) from alignment at scaffold_431:71036..71998+ >TCONS_00065127 ID=TCONS_00065127|Name=TCONS_00065127|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at scaffold_431:71036..71998+ (Clytia hemisphaerica)
gacaaaatgtacaaaatttgcATGAACACCAAAGATAAAGACATGAAAAA
ACAAAGGTTTGCAAGGTtcaagaaattcaaaaacaatttaaccAAATTAC
TTAGAGCTAGTAAAACACTCTACTACAAAAATCTCTTTTCGTCCTATGGT
AGAAACTTAAGACTGATATGGAAAGGAATTCGAGAAATAACAGGGggcaa
atcaaaatcaaatgacCTCCCACAAGTCTTTATTCACAAAGGTAAATCAA
TCAAAACTGATGATAATATTGCAACCAGTTTCAATGAATATTACAGTTCT
ATAGCAGAGaaaacaaaatcgaaaattgtACCAACTGATAAACATTTTGC
TCATTTCCTACAGAGACCAAATGCACACTCAATCTTTCTCAATCCTACTA
GCCCTCTAGAAGTTCTTAATATAATCACCAAACTTAACAACAACAAGTCT
GTTGGTCCAGAAAGCATTCCAGCTGCATTCCTCAAAATCCTTGCGCCAGA
CATAAGCATTACTCTATCAAAACTCTTTAATGAAAGTCTCACCCAAGGCC
ATTTCCCTGATTGcttaaaatcagcaaaaatcacACCTGTTCATAAAAAA
GATTCTCTCATAGATCTTATAAATTATCGTCCAATATCCCTACTTTCAAA
CAttagcaaaatctttgaaaaaattctccatGATAGACTTTATAACTTCT
TAGAGAGTCACAAGATAATATTTGAGAATCAATTTGGCTTTCGAAAACAA
CACAACACTACACATGCATGTATGGCTTTAACAGAGTCAATTAGGAATGC
GCTGGATAAAGGAGAGTTTGCTACTGGAATCTTTGTGGACCTTCAAAAAG
CTTTTGACACTGTTGAACATAATATCTTGATCCAAAAACTTAACTTCTAT
GGTATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065127-exon-scaffold_431-1491911889:71036..71731 | TCONS_00065127-exon-scaffold_431-1491911889:71036..71731 | Clytia hemisphaerica | exon |
| TCONS_00065127-exon-scaffold_431-1510915933:71036..71731 | TCONS_00065127-exon-scaffold_431-1510915933:71036..71731 | Clytia hemisphaerica | exon |
| TCONS_00065127-exon-scaffold_431-1575043694:71036..71731 | TCONS_00065127-exon-scaffold_431-1575043694:71036..71731 | Clytia hemisphaerica | exon |
| TCONS_00065127-exon-scaffold_431-1491911889:71785..71998 | TCONS_00065127-exon-scaffold_431-1491911889:71785..71998 | Clytia hemisphaerica | exon |
| TCONS_00065127-exon-scaffold_431-1510915933:71785..71998 | TCONS_00065127-exon-scaffold_431-1510915933:71785..71998 | Clytia hemisphaerica | exon |
| TCONS_00065127-exon-scaffold_431-1575043694:71785..71998 | TCONS_00065127-exon-scaffold_431-1575043694:71785..71998 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_431 | supercontig | scaffold_431:71036..71998 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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