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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065183 ID=TCONS_00065183|Name=TCONS_00065183|organism=Clytia hemisphaerica|type=transcript|length=1419bp
AAAAAggacaacttgaaaaatttaccagataaatttgatcgaatatatca
aaataaaatcttgcGAAGGAAATGGCAGGTTCACACATACGTTGAATACG
CAAAAAAATTGGACACCCTGGAAGTCGTATCTACTAAATAATAAGAGAGA
ACCACATCAACATATTGATTTGACTCAAAAACAAACCTTGCGTAGAAGAT
GCCGTTCAGCGTTGATGATATCGATAAATTACAACTCAAAAGATACATTA
AATTAATGGTATTCAGGCTAGTCACATTAGCCGCACATTATCTAGCTGTC
ATGGACGCACTCGCATCATTGGTAGATTACGCTGCAATTTTACAAGGTTC
AGACAAAAGGATCGGTacttttaatttgaatttaacATCTAATTTTACGA
CGACCCCGTTACCGATTAAAGATACCGAAACGACCAAAGCGTTAACCAGA
GCTGCTAAAATCGGATTATGTAATATGAAAAAGGCTATTAAGCAAGATGA
ATTAGATTCATTGTTAATTAACTTCAATAtgagtttctttttattacTGG
GATTTTATGGCATTGCAGTTATAGCATTTGTGATTGGAATTGTTGTTAAT
TTACGTCTTTGTTTATGCCCAGTTACCAGGGATACAGACAAAATGGGGAA
CGAGTTACCATGTATATGGGATAAAATCAAAGGTGCAACGTTCAATTTAG
CGACTTTTCCTTGCGATACAGCAATCATGTCGTGTATTGTTGGACTGTAT
GCTGTTAAACGTGGCTCAGCTGGTCTTGGATGTTGGCAATGTTTTAAGAC
GCCGACGTGCCGGAGCCAAGAAGACATTGATGGAATTTTGTTGGGGAGTA
GTATTTCAATGAATATCAATTTCATATTGGTTGTAGGGATAGTCTTTTAT
AAAGGTTTTGTGACATACTTTAGAGCAACCGATCCGGAGAAATGTGAATG
TCATTGTGTGGCCCCAAGaTGTGTGACAGGATGTTTCATATCTTTGGTTG
TGACCAGTGTGGTGATGATGCCACCGTTCCTCGTCATGAAAACTAAATAC
TTCGATTTAAAAGAAATCAACCCAGGATTCTTTGCAGACATTATGGATAA
AATGATGTTAGTTGGAATTATTATATGGGCGGTGGCAGGTGTTGCTGTTT
TGGTTGTGATGCCATTGAAAAGAGTTTTATTGGGTGGAGATGACGAGAAA
AAGAAATAACGGATAGAAGTAATCTTTAGATGTTTACCCTTAGAATGATC
ccttattttgttttaaataccctggttttagtctataattaccttattgt
tattctttttcacagttgactctctctaattcgatcttcaaggaacCAAA
AGGTTTATTCgtattagagaaagattcgaattagggATCGAGTAATTTAA
ACCATTTTTCCGATGAGGG Run BLAST on NCBI protein sequence of TCONS_00065183-protein >TCONS_00065183-protein ID=TCONS_00065183-protein|Name=TCONS_00065183-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
MPFSVDDIDKLQLKRYIKLMVFRLVTLAAHYLAVMDALASLVDYAAILQG
SDKRIGTFNLNLTSNFTTTPLPIKDTETTKALTRAAKIGLCNMKKAIKQD
ELDSLLINFNMSFFLLLGFYGIAVIAFVIGIVVNLRLCLCPVTRDTDKMG
NELPCIWDKIKGATFNLATFPCDTAIMSCIVGLYAVKRGSAGLGCWQCFK
TPTCRSQEDIDGILLGSSISMNINFILVVGIVFYKGFVTYFRATDPEKCE
CHCVAPRCVTGCFISLVVTSVVMMPPFLVMKTKYFDLKEINPGFFADIMD
KMMLVGIIIWAVAGVAVLVVMPLKRVLLGGDDEKKK Run BLAST on NCBI transcript from alignment at scaffold_433:449381..451302+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065183 ID=TCONS_00065183|Name=TCONS_00065183|organism=Clytia hemisphaerica|type=transcript|length=1922bp|location=Sequence derived from alignment at scaffold_433:449381..451302+ (Clytia hemisphaerica)
AAAAAggacaacttgaaaaatttaccagataaatttgatcgaatatatca
aaataaaatcttgcGAAGGAAATGGCAGGTTCACACATACGTTGAATACG
CAAAAAAATTGGACACCCTGGAAGTCGTATCTACTAAATAATAAGAGAGA
ACCACATCAACATATTGATTTGACTCAAAAACAAACCTTGCGTAGAAGAT
GCCGTTCAGCGTTGATGATATCGATAAATTACAACTCAAAAGATACATTA
AATTAATGGTATTCAGGCTAGTCACATTAGCCGCACATTATCTAGCTGTC
ATGGACGCACTCGCATCATTGGTAGATTACGCTGCAATTTTACAAGGTTC
AGACAAAAGGATCGGTacttttaatttgaatttaacATCTAATTTTACGA
CGACCCCGTTACCGATTAAAGATACCGAAACGACCAAAGCGTTAACCAGA
GCTGCTAAAATCGGATTATGTAATATGAAAAAGGCTATTAAGCAAGATGA
ATTAGATTCATTGTTAATTAACTTCAATAtgagtttctttttattacTGG
GATTTTATGGCATTGCAGTTATAGCATTTGTGATTGGAATTGTTGTTAAT
TTACGTCTTTGTTTATGCCCAGTTACCAGGGATACAGACAAAATGGGGAA
CGAGTTACCATGTATATGGGATAAAATCAAAGGTGCAACGTTCAATTTAG
CGACTTTTCCTTGCGATACAGCAATCATGTCGTGTATTGTTGGACTGTAT
GCTGTTAAACGTGGCTCAGCTGGTCTTGGATGTTGGCAATGTTTTAAGAC
GCCGACGTGCCGGAGCCAAGAAGACATTGATGGAATTTTGTTGGGGAGTA
GTATTTCAATGAATATCAATTTCATATTGGTTGTAGGGATAGTCTTTTAT
AAAGGTTTTGTGACATACTTTAGAGCAACCGATCCGGAGAAATGTGAATG
TCATTGTGTGGCCCCAAGGTTAGTAAAGAATACATTTGACCTTCGCTAAT
TCGAATTTAATCGGAGAATCTTAAtggttcgaattacagagaaattcgaa
ttaaagaaagtattttaagagggtttctccttaaCGGGGACTGGAAAcca
gttcgaattatagaaatattcgacataatagaaattcgaataagcgagag
ttaaTTGTATAACTTTTACCTCGTCTCTGGGAAACTACTACGGCAAATTT
CTGTCGGATGTGTCCATACAGTTTAAAGTCACATTTTAATACTTTGAAGG
TCTCTTTGGTCAATCCTGAAAAGGTGCCAATGTAacgaaagttgaaaata
ttaatCTTTTGGAccaaaactaaaaaagaaaattcaaaaataccaGAATC
TTCTATAAGGATCGCaaaagcgtcaactgtatttgacTATTCAAATCACC
TTTACTACCCCTCAAACTGTATTTGACCACAGGCTATgtgttttaatttt
actttttgttttcctttttagaTGTGTGACAGGATGTTTCATATCTTTGG
TTGTGACCAGTGTGGTGATGATGCCACCGTTCCTCGTCATGAAAACTAAA
TACTTCGATTTAAAAGAAATCAACCCAGGATTCTTTGCAGACATTATGGA
TAAAATGATGTTAGTTGGAATTATTATATGGGCGGTGGCAGGTGTTGCTG
TTTTGGTTGTGATGCCATTGAAAAGAGTTTTATTGGGTGGAGATGACGAG
AAAAAGAAATAACGGATAGAAGTAATCTTTAGATGTTTACCCTTAGAATG
ATCccttattttgttttaaataccctggttttagtctataattaccttat
tgttattctttttcacagttgactctctctaattcgatcttcaaggaacC
AAAAGGTTTATTCgtattagagaaagattcgaattagggATCGAGTAATT
TAAACCATTTTTCCGATGAGGG Coding sequence (CDS) from alignment at scaffold_433:449381..451302+ >TCONS_00065183 ID=TCONS_00065183|Name=TCONS_00065183|organism=Clytia hemisphaerica|type=CDS|length=2022bp|location=Sequence derived from alignment at scaffold_433:449381..451302+ (Clytia hemisphaerica)
ATGCCGTTCAGCGTTGATGATATCGATAAATTACAACTCAAAAGATACAT
TAAATTAATGGTATTCAGGCTAGTCACATTAGCCGCACATTATCTAGCTG
TCATGGACGCACTCGCATCATTGGTAGATTACGCTGCAATTTTACAAGGT
TCAGACAAAAGGATCGGTacttttaatttgaatttaacATCTAATTTTAC
GACGACCCCGTTACCGATTAAAGATACCGAAACGACCAAAGCGTTAACCA
GAGCTGCTAAAATCGGATTATGTAATATGAAAAAGGCTATTAAGCAAGAT
GAATTAGATTCATTGTTAATTAACTTCAATAtgagtttctttttattacT
GGGATTTTATGGCATTGCAGTTATAGCATTTGTGATTGGAATTGTTGTTA
ATTTACGTCTTTGTTTATGCCCAGTTACCAGGGATACAGACAAAATGGGG
AACGAGTTACCATGTATATGGGATAAAATCAAAGGTGCAACGTTCAATTT
AGCGACTTTTCCTTGCGATACAGCAATCATGTCGTGTATTGTTGGACTGT
ATGCTGTTAAACGTGGCTCAGCTGGTCTTGGATGTTGGCAATGTTTTAAG
ACGCCGACGTGCCGGAGCCAAGAAGACATTGATGGAATTTTGTTGGGGAG
TAGTATTTCAATGAATATCAATTTCATATTGGTTGTAGGGATAGTCTTTT
ATAAAGGTTTTGTGACATACTTTAGAGCAACCGATCCGGAGAAATGTGAA
TGTCATTGTGTGGCCCCAAGaTGTGTGACAGGATGTTTCATATCTTTGGT
TGTGACCAGTGTGGTGATGATGCCACCGTTCCTCGTCATGAAAACTAAAT
ACTTCGATTTAAAAGAAATCAACCCAGGATTCTTTGCAGACATTATGGAT
AAAATGATGTTAGTTGGAATTATTATATGGGCGGTGGCAGGTGTTGCTGT
TTTGGTTGTGATGCCATTGAAAAGAGTTTTATTGGGTGGAGATGACGAGA
AAAAGAAATAAATGCCGTTCAGCGTTGATGATATCGATAAATTACAACTC
AAAAGATACATTAAATTAATGGTATTCAGGCTAGTCACATTAGCCGCACA
TTATCTAGCTGTCATGGACGCACTCGCATCATTGGTAGATTACGCTGCAA
TTTTACAAGGTTCAGACAAAAGGATCGGTacttttaatttgaatttaacA
TCTAATTTTACGACGACCCCGTTACCGATTAAAGATACCGAAACGACCAA
AGCGTTAACCAGAGCTGCTAAAATCGGATTATGTAATATGAAAAAGGCTA
TTAAGCAAGATGAATTAGATTCATTGTTAATTAACTTCAATAtgagtttc
tttttattacTGGGATTTTATGGCATTGCAGTTATAGCATTTGTGATTGG
AATTGTTGTTAATTTACGTCTTTGTTTATGCCCAGTTACCAGGGATACAG
ACAAAATGGGGAACGAGTTACCATGTATATGGGATAAAATCAAAGGTGCA
ACGTTCAATTTAGCGACTTTTCCTTGCGATACAGCAATCATGTCGTGTAT
TGTTGGACTGTATGCTGTTAAACGTGGCTCAGCTGGTCTTGGATGTTGGC
AATGTTTTAAGACGCCGACGTGCCGGAGCCAAGAAGACATTGATGGAATT
TTGTTGGGGAGTAGTATTTCAATGAATATCAATTTCATATTGGTTGTAGG
GATAGTCTTTTATAAAGGTTTTGTGACATACTTTAGAGCAACCGATCCGG
AGAAATGTGAATGTCATTGTGTGGCCCCAAGaTGTGTGACAGGATGTTTC
ATATCTTTGGTTGTGACCAGTGTGGTGATGATGCCACCGTTCCTCGTCAT
GAAAACTAAATACTTCGATTTAAAAGAAATCAACCCAGGATTCTTTGCAG
ACATTATGGATAAAATGATGTTAGTTGGAATTATTATATGGGCGGTGGCA
GGTGTTGCTGTTTTGGTTGTGATGCCATTGAAAAGAGTTTTATTGGGTGG
AGATGACGAGAAAAAGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065183-exon-scaffold_433-1491911889:449381..450348 | TCONS_00065183-exon-scaffold_433-1491911889:449381..450348 | Clytia hemisphaerica | exon |
| TCONS_00065183-exon-scaffold_433-1510915933:449381..450348 | TCONS_00065183-exon-scaffold_433-1510915933:449381..450348 | Clytia hemisphaerica | exon |
| TCONS_00065183-exon-scaffold_433-1575043694:449381..450348 | TCONS_00065183-exon-scaffold_433-1575043694:449381..450348 | Clytia hemisphaerica | exon |
| TCONS_00065183-exon-scaffold_433-1491911889:450852..451302 | TCONS_00065183-exon-scaffold_433-1491911889:450852..451302 | Clytia hemisphaerica | exon |
| TCONS_00065183-exon-scaffold_433-1510915933:450852..451302 | TCONS_00065183-exon-scaffold_433-1510915933:450852..451302 | Clytia hemisphaerica | exon |
| TCONS_00065183-exon-scaffold_433-1575043694:450852..451302 | TCONS_00065183-exon-scaffold_433-1575043694:450852..451302 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_433 | supercontig | scaffold_433:449381..451302 + |
Blast
The following BLAST results are available for this feature:
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