TCONS_00065197 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065197
Unique NameTCONS_00065197
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065197 ID=TCONS_00065197|Name=TCONS_00065197|organism=Clytia hemisphaerica|type=transcript|length=270bp
ATAGATACTTCACGTTCATCGCAGAGTAATCTAGCCATGAAgttatcaat
tattttgttcTTTCTCGTCGTTGCTGCAACATCAATTGAATGTTATGGAG
TCACACgctTGTTCCGAATCAGAACTTTAAAACGTGTGTTCACCTCAACA
TATTTGATCAACAAAGATCCATTAGACATGCACGCGGCGGCCGCTGAATG
CGCAAAGTGTGGAGGTTTCTTGGCTACCATCAATAATGTTAGGGAGCACC
ATTATTTGGTTGGCCAATTG
Run BLAST on NCBI

transcript from alignment at scaffold_433:171480..172193-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065197 ID=TCONS_00065197|Name=TCONS_00065197|organism=Clytia hemisphaerica|type=transcript|length=714bp|location=Sequence derived from alignment at scaffold_433:171480..172193- (Clytia hemisphaerica)
ATAGATACTTCACGTTCATCGCAGAGTAATCTAGCCATGAAGTTATCAAT
TATTTTGTTCTTTCTCGTCGTTGCTGCAACATCAATTGAATGTTATGGAG
TCACACGTAAGGATTTAAACACTTAGTGGCATATCTAAGATTTCATCATT
ACTGACGAAAAATGTTTCTTTTAATCAACCCTACTCATTATAAGGATACG
AATAGTCTACGTCAAAAACTTTGAACCATCGCCTTAGAATCGCAACTGCC
TAACGCTTAGAATCAAAACTCTTCCAAAAATTTTCCTTTTGATATTTGTT
TTAAATTTCCTACACCTAAAACAAATTCAAGTCAATTCCATATCCTGGGT
AATAGAGTTTCACATGCAATTGAGAGAGATGTTTCAACAACCAATTGAAG
TGATAGGTCGGCCCAATTAGTTTATTTTTCGAATAGAAATCTCGGTTATA
TCACGCCCATCAGTAAAAAGTGATAAAAATGTTTCTGAAGCCTGTTACTG
AATCTTTCATTTTATCTTTATATATCATTTTATCTATTAATTTTTTTCAG
GCTTGTTCCGAATCAGAACTTTAAAACGTGTGTTCACCTCAACATATTTG
ATCAACAAAGATCCATTAGACATGCACGCGGCGGCCGCTGAATGCGCAAA
GTGTGGAGGTTTCTTGGCTACCATCAATAATGTTAGGGAGCACCATTATT
TGGTTGGCCAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040874XLOC_040874Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065197-exon-scaffold_433-1575043694:172088..172193TCONS_00065197-exon-scaffold_433-1575043694:172088..172193Clytia hemisphaericaexon
TCONS_00065197-exon-scaffold_433-1575043694:171480..171643TCONS_00065197-exon-scaffold_433-1575043694:171480..171643Clytia hemisphaericaexon
TCONS_00065197-exon-scaffold_433-1510915933:172088..172193TCONS_00065197-exon-scaffold_433-1510915933:172088..172193Clytia hemisphaericaexon
TCONS_00065197-exon-scaffold_433-1510915933:171480..171643TCONS_00065197-exon-scaffold_433-1510915933:171480..171643Clytia hemisphaericaexon
TCONS_00065197-exon-scaffold_433-1491911889:172088..172193TCONS_00065197-exon-scaffold_433-1491911889:172088..172193Clytia hemisphaericaexon
TCONS_00065197-exon-scaffold_433-1491911889:171480..171643TCONS_00065197-exon-scaffold_433-1491911889:171480..171643Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:171480..172193 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.890255	4.61661	0.992771	0	0	0.591547	0	0	0.376912	0.782853	7.70369	0.690694	0	1.21064	0	0	0.995112	0	0	1.10624	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065197 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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