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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065199 ID=TCONS_00065199|Name=TCONS_00065199|organism=Clytia hemisphaerica|type=transcript|length=2660bpRun BLAST on NCBI protein sequence of TCONS_00065199-protein >TCONS_00065199-protein ID=TCONS_00065199-protein|Name=TCONS_00065199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=619bp MDIKEDLKRSSSEGRRSKRKRHGAKEKFKKQKSVFQKLLESEHHMAMVFSRun BLAST on NCBI transcript from alignment at scaffold_433:192288..234417- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065199 ID=TCONS_00065199|Name=TCONS_00065199|organism=Clytia hemisphaerica|type=transcript|length=42130bp|location=Sequence derived from alignment at scaffold_433:192288..234417- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_433:192288..234417- >TCONS_00065199 ID=TCONS_00065199|Name=TCONS_00065199|organism=Clytia hemisphaerica|type=CDS|length=1860bp|location=Sequence derived from alignment at scaffold_433:192288..234417- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00065199 vs. Swiss-Prot (Human)
Match: MFD4A (Major facilitator superfamily domain-containing protein 4A OS=Homo sapiens GN=MFSD4A PE=2 SV=3) HSP 1 Score: 188.734 bits (478), Expect = 3.312e-51 Identity = 142/482 (29.46%), Postives = 242/482 (50.21%), Query Frame = 1
Query: 529 EHHMAMVFSYCGVFLLYGMTDELLGPTLIELSCLAAKPLKTMSWLFFSHDMGLLCGTLFGGLIVSRVDKNL-AMTICLISNALSITILPILHKFMGMVIFVFLYGFFLGTPDTLANVMLIKVFGKEVAPYIQGVHFFYGFGAFLSPLVARPFLRKSCTYMINTTKYYDIPDPTFNLTYDSGTG-LWAK--SNTEF-----KRDEDSDIRYAYWMAALFHVPVVFGLSWIFLKRHLDSQKGIYRGSFVSLHNDDEL-----PVQSLDMVSFNPE-----------ASFWERVQTNSKHRLLAVTILCSVIMYLYEGLMAMFGGYIYSYAVKGTVSMTSDQGAYLTSMYWGFFSLGRFLGIIIAFFASPKSMLMANVIGCFISSIVFAAGQSNLKAIYVGTCMLGLSLSSTAPSVIAMAEQYVDLTAHTTSILVISSALGELTMPVMVGQAFERVGT-SIVPATVLLICFLGFVGYCLLLTFDN 1896
++ +Y VF +G+ LGPTL++L C L +SW+FFS + LL G+ GG+ + ++L A+ ++ +L ++P + + L G +G DT+AN+ L++++ K+ A ++Q +HFF GFGA LSPL+A PFL ++ N+T F+++ G + AK SN F K + + YA+W+ AL ++PV + + K L + R +S DEL P + D S P+ + + + + A+ I ++++++ +GL + ++YSYAV+ +S+ YL S++WGF +LGR L I I+ P +M+ NV+G ++ +V N+ ++VGT LGL LSST PS++A E + T++LV + +GE+ + ++VG F+ G+ S + V+ C L F Y LLL F
Sbjct: 12 RRNLQPTLTYWSVFFSFGLCIAFLGPTLLDLRCQTHSSLPQISWVFFSQQLCLLLGSALGGVFKRTLAQSLWALFTSSLAISLVFAVIPFCRDVKVLASVMALAGLAMGCIDTVANMQLVRMYQKDSAVFLQVLHFFVGFGALLSPLIADPFLSEANCLPANSTANTTSRGHLFHVSRVLGQHHVDAKPWSNQTFPGLTPKDGAGTRVSYAFWIMALINLPVPMAVLMLLSKERLLTCCPQRRPLLLS---ADELALETQPPEKEDASSLPPKFQSHLGHEDLFSCCQRKNLRGAPYSFFAIHITGALVLFMTDGLTGAYSAFVYSYAVEKPLSVGHKVAGYLPSLFWGFITLGRLLSIPISSRMKPATMVFINVVGVVVTFLVLLIFSYNVVFLFVGTASLGLFLSSTFPSMLAYTEDSLQYKGCATTVLVTGAGVGEMVLQMLVGSIFQAQGSYSFLVCGVIFGC-LAFTFYILLLFFHR 489 The following BLAST results are available for this feature:
BLAST of TCONS_00065199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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