TCONS_00065215 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065215
Unique NameTCONS_00065215
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065215 ID=TCONS_00065215|Name=TCONS_00065215|organism=Clytia hemisphaerica|type=transcript|length=2715bp
TAGACACCTGCTACTGCATTCTACAACGCCagttttttaccattttttca
GATACTGAAATTCTCCTGTCTTTTTTACTCAGGAATAACAAAGATACTtt
taacattaaaaaatatatcaattaaataaaaattactaaTGAATCGCTTG
ATCATCCGCCATGCACGGCAAATTGTTCAAATATGTACCAACAGAGAACC
CATGATATGCGATCCAAAACTCTTACAAAACGTGTCTGTGTTGGAGtgca
atgacgtcatcaaaggaTACTCCATCGTGGTAGATAGCAATGGAAATATA
GCTGACGTAGGGAGTGATGATGTCATCGGAGAGAAATATAAAGATCATAC
ATTTGAGAAAGATATCGATGCGACTGGAAAGTGTGTTTTGCCAGGCTTTA
TTGATGGTCACACACACCCTGTTTGGACTGGTGACAGAGTTCACGAATTT
GCTATGAAGTTATCAGGTGCAACGTATATGGATATCCATAAAACAGGAGG
AGGGATTGGTTTTACTGTACAGAATGTCCATCAAAGTTCCGAAGAAGAAC
TTTATCAAAGCTTCGTACAGCGTTTAAACTGCATGATAAAATGCGGAACG
ACCACTGTAGAAGCTAAAAGTGGTTATGGTCTCGATGCTCCAAACGAAAT
TAAGATGCTTCGTGTGATTCATCGAGCAAAAAAGGAGCTCAAAGAAACTA
TTGATATCTCATGCACTTATTGTGGAGCCCACTCTATTCCAAAAGGTAAA
ACCATGGAGGAagcaactgatgacgtcatcaacaatCAAATACCGCAAAT
TAGCGAGTTGGTTAAAAATGGCGAGTTGAGTGTCGACAATATTGATGTTT
TCTGTGAGAAAGGTGTCTTTGACACTGATGCAACTCGCCGAATTTTGGAA
GCAGGGAAAGCACATAATATGGCGATCAATTTCCATGGTGATGAATTGCA
CCCGATGCAGTCTGGAGAGCTTGGAGCAGAGTTAGGCGCACGTGCTATCA
GTCATTTAGAAGAAGTCAGTGACAAAGGAATTGTTGCCATGAGTGACAAG
AAAGTTGCTGCTGTACTTCTACCTACAACCGCCTATATCCTTCGCTTACA
ACCACCTCCAGCTAGAAAAATGATTGATCAAGGTGTTCCGGTTGCTTTAG
GGTCAGATTTCAATCCGAACGCATTCTGCTATTCAATGcCAACAGTCATG
CATTTAGCATGTTGTCTTCTGCGCATGTCCATGACGGAAGCATTGATTGG
CGCAACATTAAACTCTGCTTACAGTGTTGGGCTGTCTGAAACACATGGAT
CCATTGAAGTTGGAAAAGTCGGTGATCTTGTGATTGTTGATGCCCCAAGG
TGGGAACATATTATTTATCAGTTCGCTGCGCATGATCAAACAATTGATTA
CGTCATCAAGAGGGGTATAGTGTCATACCACAAACGTTCGTAAGAATCAA
ATTTTATATTATTATTTGCTGGAACCTCCTAAGATGTTAAAACAATGGAG
TCCCTAAGGACCCAGCACTTTATGGGACCCTGAATGACGGTGACTCTTAC
TATGatatcaatttcttttttggaaTTGCACAGCCGGAAAGCTTAAGTAA
AATCCTTAATTCTACAATAGTGTAGATGCCTTTTCTTTGCAAGGTACAAA
GGATTTTTACCTGCATAATaacgtggtgtccttgaaagcGTCTTAAACGC
CTTTAAGGTCGTCTATCCCTCAGAAAGTTTTTCCTGTTCTACTTTTTACT
TACTTTGCACATTGAACTACTATAAACGCTACTGCAATTTTTATAATGCC
GCCCAAAAAGGAAGCAACTTTTTGAAagcaatttttagaaacttatagat
ttgaattttgatagaatttttattatatttatagcattcattaaaaataa
aaagtcatgGTGTGTATAGAAAATTAGCTAAGAATTTTTAttcacaaaag
aaatctttacaatttatCAAATGACATACNAACGTTCGTAAGAATCAAAT
TTTATATTATTATTTGCTGGAACCTCCTAAGATGTTAAAACAATGGAGTC
CCTAAGGACCCAGCACTTTATGGGACCCTGAATGACGGTGACTCTTACTA
TGatatcaatttcttttttggaaTTGCACAGCCGGAAAGCTTAAGTAAAA
TCCTTAATTCTACAATAGTGTAGATGCCTTTTCTTTGCAAGGTACAAAGG
ATTTTTACCTGCATAATaacgtggtgtccttgaaagcGTCTTAAACGCCT
TTAAGGTCGTCTATCCCTCAGAAAGTTTTTCCTGTTCTACTTTTTACTTA
CTTTGCACATTGAACTACTATAAACGCTACTGCAATTTTTATAATGCCGC
CCAAAAAGGAAGCAACTTTTTGAAagcaatttttagaaacttatagattt
gaattttgatagaatttttattatatttatagcattcattaaaaataaaa
agtcatgGTGTGTATAGAAAATTAGCTAAGAATTTTTAttcacaaaagaa
atctttacaatttatCAAATGACATACAAAAGGTATTATTTCCATTTGGC
AGTTATCCCGGCCATGGCCTActgtattttaaaaatttatcgCGACTTTT
TAATCTCATAcgatttaaaactttttgaagtatttttagtgaaattttga
TGTATTAGAATCATGTTAATAAAAGGACATTTTGCTAACTCCCCTGTAAA
AATAAGTTAATAAAC
Run BLAST on NCBI

protein sequence of TCONS_00065215-protein

>TCONS_00065215-protein ID=TCONS_00065215-protein|Name=TCONS_00065215-protein|organism=Clytia hemisphaerica|type=polypeptide|length=434bp
MNRLIIRHARQIVQICTNREPMICDPKLLQNVSVLECNDVIKGYSIVVDS
NGNIADVGSDDVIGEKYKDHTFEKDIDATGKCVLPGFIDGHTHPVWTGDR
VHEFAMKLSGATYMDIHKTGGGIGFTVQNVHQSSEEELYQSFVQRLNCMI
KCGTTTVEAKSGYGLDAPNEIKMLRVIHRAKKELKETIDISCTYCGAHSI
PKGKTMEEATDDVINNQIPQISELVKNGELSVDNIDVFCEKGVFDTDATR
RILEAGKAHNMAINFHGDELHPMQSGELGAELGARAISHLEEVSDKGIVA
MSDKKVAAVLLPTTAYILRLQPPPARKMIDQGVPVALGSDFNPNAFCYSM
PTVMHLACCLLRMSMTEALIGATLNSAYSVGLSETHGSIEVGKVGDLVIV
DAPRWEHIIYQFAAHDQTIDYVIKRGIVSYHKRS
Run BLAST on NCBI

transcript from alignment at scaffold_433:452172..461908-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065215 ID=TCONS_00065215|Name=TCONS_00065215|organism=Clytia hemisphaerica|type=transcript|length=9737bp|location=Sequence derived from alignment at scaffold_433:452172..461908- (Clytia hemisphaerica)
TAGACACCTGCTACTGCATTCTACAACGCCAGTTTTTTACCATTTTTTCA
GATACTGAAATTCTCCTGTCTTTTTTACTCAGGAATAACAAAGATACTTT
TAACATTAAAAAATATATCAATTAAATAAAAATTACTAATGAATCGCTTG
ATCATCCGCCATGCACGGCAAATTGTTCAAATATGTACCAACAGAGAACC
CATGATATGCGATCCAAAACTCTTACAAAACGTGTCTGTGTTGGAGTGCA
ATGACGTCATCAAAGGATACTCCATCGTGGTAGATAGCAATGGAAATATA
GCTGACGTAGGGAGTGATGATGTCATCGGAGAGAAATATAAAGATCATAC
ATTTGAGAAAGATATCGATGCGACTGGAAAGTGTGTTTTGCCAGGTACAA
ATTTTTGTTGATAGTTTTTGGCCTCAAACATTTTCTCTTTTCGATACTTA
TGGGAAAACTTTTCCCACTTTAACACTTGACTTGCTTAAAATTCTGTCAT
CTCAGGCTCAATATTGTTTTTAAATTATTTTTATTTTTTGTTGTTTTTAA
ATCTCTCCCAAAACGATTTAATTTCGAGTATTATGGAAGAAATAGATTCA
TCGGGGATTTGATTTGGCGGATGATAAAGCCAAAAATACTTTTTGAAATG
AACTAAAATTTTGTTCCAAGGCCTGAAATAGAATGGATTTGAGAGGAATA
AATGAAAAGCGAAATACTCTTTATTTTGTAAGGGTTTCCTTGAAATTGGA
AGATTGTCAAAATAAGTTAACTGGGGTGGTTCTGAGAGCCCAGACTTTGA
CGGTTCAGACTCCATAATACACAAAAATCTCATAGTTTGAACACTCTTCA
GTATTAGAAAGCGAAGCCTCGGCAATCATTATATCGAAGAAATTAGAAAT
TAGAAATTAGTTTTTAGTGTTCATATTGTTTGTTATTGATTACATATTAT
TCAGGCTTTATTGATGGTCACACACACCCTGTTTGGACTGGTGACAGAGT
TCACGAATTTGCTATGAAGGTAAAATTACTGAAGTTTGACCGAATCTGCC
ATTATTTTTCCTTGATGAAGTCGCGTAAAAATCACGAAAATTTCAACATA
AGCAGTCGTTTTGTTTTCTGTCTTATCAATTTTCTGCTTCCACCTTTTTA
AGTTTCTTTCATTTATAAGAATTTCGTCTGTGCATTATGCTGTCCCTCAG
TTAAAAAATTTTCATAGCATAACTTGAGCAAATTACAAAAAATGCATGTA
GGATAAGATATGCAACTTACTCCAAACATAATTTGAGGCTCTTACAACAG
GCCCCAAAAAGTATTTTGCTAAGCACAGCGAGACTCATAAAAATTTACCC
TACTATGCTTATAAAAAATGTATGAATGAAATTGTTCAGTTATTTTTCTA
CAGTTATCAGGTGCAACGTATATGGATATCCATAAAACAGGAGGAGGGAT
TGGTTTTACTGTACAGAATGTCCATCAAAGTTCCGAAGAAGAACTTTATC
AAAGCTTCGTACAGGTATAATATAAAGCTTATACGTTTTTCTTCATAAAT
ACAAAGTATATAGGAACATAAGTATTCGATGACCGAAATATTAAAAACAA
GTTTTTAAAGGATTTGCAGGTTAATGGCTTTGCGGGCTTTAAAAGACCCA
ATACAGGAGAAATTGCACAAAATTATACACAGAACGATGAACGTAATAAC
GTTTTAAGAACATTCTCTGACTTCAAAATTAAAAAGAATATCGGAAGGCT
TCACGAGAATGAAGAGGCAAGCCTTATCCCAAACTACAAACATTTTTCAC
CCAAAGATACTTTGAACTCTCCTGATTTCAACAAAGGTCTAAGCCTCTAG
AGGGAGGCGAAAAACCCCGTATTTTGCTATTTTTTCACTCCAGCAGACAA
CCCTCTAAGGCCTTATTTTTTGGACCTACTCCGGTGGGGTGGAGGTCCTA
TAAATTAACCTGTGTTCGTTCGTTCGTCCGTTCGTCTGTTACCAACTTTT
CTCAGGATTGAATTATAGGAATCTTTTGATTTTTGGTACAAAGGTGCAAA
ATGGTGGTGACCAAATTGTAGGTCCATAAAAGTATCACTTGTTACTTCCT
AAAAGCTATTTTGAGCAATTCATCTTTTGAAAGCTGAAAATATTTTCAAT
AATAATCAATAAATGGGGGCGTCTGAAAGTTTTTCAAAAGTAATATAACC
TGGGGAGACGTTTATTAGGTTGTTGTCACATTATTTCTATCAAAGAAAAT
CGATTCTTTCGCTATTTCTTTACAGCGTTTAAACTGCATGATAAAATGCG
GAACGACCACTGTAGAAGCTAAAAGTGGTTATGGTCTCGATGCTCCAAAC
GAAATTAAGATGCTTCGTGTGATTCATCGAGCAAAAAAGGAGCTCAAAGA
AACTATTGATATCTCATGCACTTATTGTGGAGCCCACTCTATTCCAAAGT
AAGTTTTGATCTAGCGTGTTAGACTATTTATTGACAAGTTTTTCTTTTGA
TTTTTTTTGCTACTTTTACAAGATACGCTTACCTAGACTATTTTTTGAGA
AGTTTTTCTTTTTAATTTTGTTCTGTTTTTGCTGTGCTCACCTTTTTTTA
GTTCTGGTCCCGAAAGTGTTATCGTTCCTTAAAAACCACGACCAACTTTT
GGGGGTTGTTGGTGAACTAGGCTACACGCGTCTCCTCTGATATGTTTTCA
TATAGGGGATGCATATCATGTATAAAATTTCTGTCCGAGAGTTTATGACA
TACCTTTGAATTTAATTATGGGTGACGTAAACTTAAACTTGATAAAGTAT
CACCTTGTAAAAGACCACAGATATCTTAAATGAAACACTAGCATAAAGCG
ACTTGATCTTTCCCAAGCTATAGTAGTTGAAGCAAAATAATCCGTCATCT
TTACGAAAAGTAGACCACAGTAGACCACAGTTTGGCACTGGCATTTTAGG
GCTACTTTTTTTTCTTTCTGTAAACAATCCTCCTATATTGTTGGATTATT
GCAAATCGAGCTGACAATATGTTGCAAACATATTTTCAATATATTGCCGA
CATTCAGCAATATATCGTCAATATATTGTAGCCCTTTTGTTCAATTAAAA
CCAAACAACTAGCATGGCTCGCACCCCCCCCCCCCCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCAATGTCGTATATATC
AGACATGGGCTATGTAGGAGGGCGAAGCCAAATTTGGCCCTGAGAAACTT
GATTCTGTCCTCCAGCGAATTAGTTTGAAGTTTTCCCGCTCGGCACCTTT
CTATCACTCAGACAGGTCCGCGCCTAAATCAGACGGCGCCGAAGGCGCCT
AAAAGAAAGAGGAGACTCTAAGCTATCCAATGGACTATAAACGAGCTTCT
AACTCCTTTNAGTCTCTAAAAGACTGAAACTTTTTTGTTGCGCACCCGTT
AGTTAGATAAAAGCAAGATAAAAGCAAGATAGAATATAGTTCCCAAGCCC
CCAGACCTTACTGCATAAAAGTTAGATACATCCAGGAAGATTTTGGTTGT
AGCCCCCCCCCTGCGGGCTGGGGGGGGGGTCATGCCATGACCTTTATGTT
TTCATGCAAAGTGTGATCTGATCCTTAAAATGCAAAAATGAAGACATTCT
ATTGCATTCTCTAAAAGTGCACACACATGTAAATATAGCTTTGTGAATGC
CATAAAATTTTTCCCCTATACTGGGACCTAAAATTTTATCAGGCTGGGGG
GACCTTGTTCTCAGGGGGGACCTAAATTTGGCGGGGGGACGTAGAACCCC
AGTCGGAGCCATGACTAGCTTGCAGCGAAGTGGTGAGGCGAGAGAATGGT
CTTAATTGATCAAACAGCCAGTACCGAACTGCGGTCTACTAATAAGGATG
GCGCATTATTTTGCTTCCAGCCAGGGATTGTGTAGCTCTATCTAGTGTTT
TGTATAAGATGTCTGTGGCAAAGCTGGGTAAAATAGTCAGTGCTCTCAAA
AAAATAAAATAAACTTGATATCACCTGTAGAGGTAAAACCATGGAGGAAG
CAACTGATGACGTCATCAACAATCAAATACCGCAAATTAGCGAGTTGGTT
AAAAATGGCGAGTTGAGTGTCGACAATATTGATGTTTTCTGTGAGAAAGG
TGTCTTTGACACTGATGCAACTCGCCGAATTTTGGAAGCAGGGAAAGCAC
ATAATATGGCGATCAATTTCCATGGTGATGAATTGCACCCGATGCAGTCT
GGAGAGGTATTTGCCATTTTAAAGTCTTTGTATAAAATCAGAGGTTAATA
GCTGAGCCATGCGTTGGCAATACATTTATTAAGTTTTCAGTCATCGACAC
AAAAACGTCAAATTGTCTAACCTTTTCAATATTTCAGGAATTTTTTCGTT
TAGTTTAAGGGGGGGGGGAGGTTAGAAAATTTTCGAGATTTTAATAAACG
GGGGGACCTTATTGCCAGGGGGTTTGGAAATTGTACTTCTGAAAACCCAT
AAATAAGGTAAATATAGGCTAAAATCAGGCTATTTAGAGCAAAATAAGGG
GCCTTGTCTTTGACAGCTGAAAATATTCTTGAAAATTAATAACCGAGGTA
GGGTCCTAATAAGGTCCGGGGGTTGGGAAAATTTCGAAAAATTAACAAGG
GGGGGGGGGGGGCGTTTATTTGGAACCTAAGAGTAATCATTTTTCGAATT
CTGGTAGTAAATGTTGCTGCCTATCCAGCATACGTCTGAAGGAAATAAGT
GGCTTCAAATCCTACATAGAGGTTTAGAAAGCTTTTGGCTATATCTTACT
ATTGATTTAAACTGCTTTATAGCTTGGAGCAGAGTTAGGCGCACGTGCTA
TCAGTCATTTAGAAGAAGTCAGTGACAAAGGAATTGTTGCCATGAGTGAC
AAGAAAGTTGCTGCTGTACTTCTACCTACAACCGCCTATATCCTTCGCTT
ACAACCACCTCCAGCTAGAAAAATGATTGATCAAGGTTCGTAGTTTTTTT
ATGTATTCTTCGAATAAGTTACTAAAGGCTAGAACATCAACTTTGACATT
CAATATATTGAGAGTTTCATTATAAGGCTGATATGAAAAGAAGTTTCGTG
TTTCATGCATTGATCTTTTTGTGTAACTATCCACAGACACGTGATTCGTA
CTTCCATCAGTGCGGCTCGGTTTAGCAAGCTTAGAATGCTGTTGTCGCCA
CAGTGCTCAAAACAATCGAGTGATGAACAGAGAAGTAGAGCTTGCTTGCT
CCTTAAAAAAAATAGTAATTCAACAAATTCTACTTGACCTTAAAATAACT
ATAGAAATCTCAATACAAGGGTTGCAAAATGAAATCAATGCAGTCAAAAC
ATGTAATTACTCGAAAAAGTTCACATGATTTTATTCCCATGTTACTTGCT
TTATAACTTACAGCTAATAACTTTATTAGTGTCAGTAAATTCTAACCAAT
CAGAAATAAATGTCATGTCACTAAAAATTTCGAGTAAAAGCGTGACTTTA
ATTTTGCAACCTGTGTATTTCACAGTTTTCAAATAGACTTAATCTCTTTT
TCCTACTTGTTATAGCTTCATTTCTCATTGTAGGTGTTCCGGTTGCTTTA
GGGTCAGATTTCAATCCGAACGCATTCTGCTATTCAATGGTATGTATATT
CATAATTTTTAGACCATGTTCACACGTTACTGTTTCGTTTCGCTCCGGTA
TGATTTGTTACGGATCGAGTGTGTTCATATTGCTTTTGGAACGTCAAAAA
AGAATACGTTACAAAGCAAAACGGATGGAAACGGTTTCGCTCCACTTTTT
TCATCGGAACGGAACTGCTCCGTTTTCTTGCTCCTAAACGTTCCGAAACC
AATATGAACACACTCGATCCGTTACGAAAATTAATCATACCAGAGCGAAA
CGGAACAGTGTGAACATGGTTTTAGACACGTTGATCTGTCTTCATTTTTT
ATCAAGCGAAGAAGGCGCGTATGTAGACTCAATGTCAATTGAATACTATA
CATGGTCGGGAAGTTCCAGCTCCGAGGTTGGGTTTTTTTTATTTTGGTCA
CGTGATCGTTTCGTATGTGCAGATTTCGGCGGGAAACGAGTTTGCTACTT
CAGGACTGAGCAGAAAATAAAAACAAACTTCATTCTATCCTTGGAGATAA
ATCAAACATTNGCGCGAACCACGTGTCATTAAAAAGAACAATTAAAATCA
CGTGTCCAAAACAAACTTGTAAAACAATTGAACAATCAAAATTAGCCATA
TTTAGTTGGATCTTTTATTTTGACACGTGACATTTGTTTTGATTTTGTAT
CCGCTGCATACAGTTTGTTTACAAATTTCGCAAGTACTGTTATGTCCCTT
AAAAAAAAAATAATTCAACAAATTCTACTTGACCTTAAAATAACTATAGA
AATCTCAATACAAGGGTTGCAAAATTAAATCAATGCAGTCAAAACATGTA
ATTACTCGAAAAGGTTACTTGCTTTACAACTTACAGTTTTGATAACTTTA
TTAGTGTCAATAAATTCGAACCAATCAGAAATGTCATGTCACAAGCACAT
AAAAATTTCGAGTAAAAGCGTGACTTTAATTTTGCAACCTGTGTATTTCA
CAATTTTCAAATAGACTTAATCTCTTTTTCTTACTTGTTATAGNAAGATG
GCTGAACACTTTGAAACTGCTGAGATAGTCGAAACTGACTTTGAATTTGA
TGTTTTGGATCTCGAAGAAGATATTTCCATATTTTTTGAGGTAGTAGAAT
CCAACCTCGGGCTCCGAACCAAGCTGACTTCCTGACCATGTATATTTTTA
GTGACTATGGTAGACTGGAATCATTTATAATCCGTATAATACAGTAATAT
GGATGTTATATGGTAATACGATAACTGTTACGGGATAATACCAGTTTACA
TTATCTACAATTTAATCCTTCCTCTACATTTTGCTTATTTTTTACTATGT
CTGCATCAGGCGTCCAGCATGCTACACGTTATTTTTTAAGAACAAACTAT
ATAAGAACACCAAACTTCAATGGCCAAAATGTTAAGAACAAGTTAAGAAC
ATGTTAAGGCTTCAAAAATGTTGGATGTTCTTATAAGAAAAAACGTGTAG
CTTGGTGAGCGTGTGAATAAATCATGATTGATAAGTTTGACGTTATTCAA
TGCTACCATTTTGGTTGACAAAAGGACTGCTATACTCGCGCCCGACCCTC
AAATTTTTTTCAATTTTCTTCTTCAGCCAACAGTCATGCATTTAGCATGT
TGTCTTCTGCGCATGTCCATGACGGAAGCATTGATTGGCGCAACATTAAA
CTCTGCTTACAGTGTTGGGCTGTCTGAAACACATGGATCCATTGAAGTTG
GAAAAGTCGGTGATCTTGTGATTGTTGATGCCCCAAGGTAACGAAAATCT
AGTGGTTATAATAGGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCTA
TTCTGTCGTGCAAATCGATTGTCAATCTTGAGTATAGGGGTGAAAGACTA
ATCGAACCATCTAGTAGCTGGTCTCCTCCGAAGTTTTCTTAGACTACATA
ATATATTTAGTCCATGTAAAATGGGGCACTTACCTAGACCTTACTACATA
TCCGCATGGTTTTCTTTTCAGGTGGGAACATATTATTTATCAGTTCGCTG
CGCATGATCAAACAATTGATTACGTCATCAAGAGGGGTATAGTGTCATAC
CACAAACGTTCGTAAGAATCAAATTTTATATTATTATTTGCTGGAACCTC
CTAAGATGTTAAAACAATGGAGTCCCTAAGGACCCAGCACTTTATGGGAC
CCTGAATGACGGTGACTCTTACTATGATATCAATTTCTTTTTTGGAATTG
CACAGCCGGAAAGCTTAAGTAAAATCCTTAATTCTACAATAGTGTAGATG
CCTTTTCTTTGCAAGGTACAAAGGATTTTTACCTGCATAATAACGTGGTG
TCCTTGAAAGCGTCTTAAACGCCTTTAAGGTCGTCTATCCCTCAGAAAGT
TTTTCCTGTTCTACTTTTTACTTACTTTGCACATTGAACTACTATAAACG
CTACTGCAATTTTTATAATGCCGCCCAAAAAGGAAGCAACTTTTTGAAAG
CAATTTTTAGAAACTTATAGATTTGAATTTTGATAGAATTTTTATTATAT
TTATAGCATTCATTAAAAATAAAAAGTCATGGTGTGTATAGAAAATTAGC
TAAGAATTTTTATTCACAAAAGAAATCTTTACAATTTATCAAATGACATA
CNAACGTTCGTAAGAATCAAATTTTATATTATTATTTGCTGGAACCTCCT
AAGATGTTAAAACAATGGAGTCCCTAAGGACCCAGCACTTTATGGGACCC
TGAATGACGGTGACTCTTACTATGATATCAATTTCTTTTTTGGAATTGCA
CAGCCGGAAAGCTTAAGTAAAATCCTTAATTCTACAATAGTGTAGATGCC
TTTTCTTTGCAAGGTACAAAGGATTTTTACCTGCATAATAACGTGGTGTC
CTTGAAAGCGTCTTAAACGCCTTTAAGGTCGTCTATCCCTCAGAAAGTTT
TTCCTGTTCTACTTTTTACTTACTTTGCACATTGAACTACTATAAACGCT
ACTGCAATTTTTATAATGCCGCCCAAAAAGGAAGCAACTTTTTGAAAGCA
ATTTTTAGAAACTTATAGATTTGAATTTTGATAGAATTTTTATTATATTT
ATAGCATTCATTAAAAATAAAAAGTCATGGTGTGTATAGAAAATTAGCTA
AGAATTTTTATTCACAAAAGAAATCTTTACAATTTATCAAATGACATACA
AAAGGTATTATTTCCATTTGGCAGTTATCCCGGCCATGGCCTACTGTATT
TTAAAAATTTATCGCGACTTTTTAATCTCATACGATTTAAAACTTTTTGA
AGTATTTTTAGTGAAATTTTGATGTATTAGAATCATGTTAATAAAAGGAC
ATTTTGCTAACTCCCCTGTAAAAATAAGTTAATAAAC

Coding sequence (CDS) from alignment at scaffold_433:452172..461908-

>TCONS_00065215 ID=TCONS_00065215|Name=TCONS_00065215|organism=Clytia hemisphaerica|type=CDS|length=1305bp|location=Sequence derived from alignment at scaffold_433:452172..461908- (Clytia hemisphaerica)
ATGAATCGCTTGATCATCCGCCATGCACGGCAAATTGTTCAAATATGTAC
CAACAGAGAACCCATGATATGCGATCCAAAACTCTTACAAAACGTGTCTG
TGTTGGAGTGCAATGACGTCATCAAAGGATACTCCATCGTGGTAGATAGC
AATGGAAATATAGCTGACGTAGGGAGTGATGATGTCATCGGAGAGAAATA
TAAAGATCATACATTTGAGAAAGATATCGATGCGACTGGAAAGTGTGTTT
TGCCAGGCTTTATTGATGGTCACACACACCCTGTTTGGACTGGTGACAGA
GTTCACGAATTTGCTATGAAGTTATCAGGTGCAACGTATATGGATATCCA
TAAAACAGGAGGAGGGATTGGTTTTACTGTACAGAATGTCCATCAAAGTT
CCGAAGAAGAACTTTATCAAAGCTTCGTACAGCGTTTAAACTGCATGATA
AAATGCGGAACGACCACTGTAGAAGCTAAAAGTGGTTATGGTCTCGATGC
TCCAAACGAAATTAAGATGCTTCGTGTGATTCATCGAGCAAAAAAGGAGC
TCAAAGAAACTATTGATATCTCATGCACTTATTGTGGAGCCCACTCTATT
CCAAAAGGTAAAACCATGGAGGAAGCAACTGATGACGTCATCAACAATCA
AATACCGCAAATTAGCGAGTTGGTTAAAAATGGCGAGTTGAGTGTCGACA
ATATTGATGTTTTCTGTGAGAAAGGTGTCTTTGACACTGATGCAACTCGC
CGAATTTTGGAAGCAGGGAAAGCACATAATATGGCGATCAATTTCCATGG
TGATGAATTGCACCCGATGCAGTCTGGAGAGCTTGGAGCAGAGTTAGGCG
CACGTGCTATCAGTCATTTAGAAGAAGTCAGTGACAAAGGAATTGTTGCC
ATGAGTGACAAGAAAGTTGCTGCTGTACTTCTACCTACAACCGCCTATAT
CCTTCGCTTACAACCACCTCCAGCTAGAAAAATGATTGATCAAGGTGTTC
CGGTTGCTTTAGGGTCAGATTTCAATCCGAACGCATTCTGCTATTCAATG
CCAACAGTCATGCATTTAGCATGTTGTCTTCTGCGCATGTCCATGACGGA
AGCATTGATTGGCGCAACATTAAACTCTGCTTACAGTGTTGGGCTGTCTG
AAACACATGGATCCATTGAAGTTGGAAAAGTCGGTGATCTTGTGATTGTT
GATGCCCCAAGGTGGGAACATATTATTTATCAGTTCGCTGCGCATGATCA
AACAATTGATTACGTCATCAAGAGGGGTATAGTGTCATACCACAAACGTT
CGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040887XLOC_040887Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065215-exon-scaffold_433-1575043694:461515..461908TCONS_00065215-exon-scaffold_433-1575043694:461515..461908Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1575043694:460890..460954TCONS_00065215-exon-scaffold_433-1575043694:460890..460954Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1575043694:460395..460505TCONS_00065215-exon-scaffold_433-1575043694:460395..460505Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1575043694:459461..459633TCONS_00065215-exon-scaffold_433-1575043694:459461..459633Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1575043694:456903..457128TCONS_00065215-exon-scaffold_433-1575043694:456903..457128Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1575043694:456174..456336TCONS_00065215-exon-scaffold_433-1575043694:456174..456336Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1575043694:455520..455575TCONS_00065215-exon-scaffold_433-1575043694:455520..455575Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1575043694:453772..453932TCONS_00065215-exon-scaffold_433-1575043694:453772..453932Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1575043694:452172..453537TCONS_00065215-exon-scaffold_433-1575043694:452172..453537Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1510915933:461515..461908TCONS_00065215-exon-scaffold_433-1510915933:461515..461908Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1510915933:460890..460954TCONS_00065215-exon-scaffold_433-1510915933:460890..460954Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1510915933:460395..460505TCONS_00065215-exon-scaffold_433-1510915933:460395..460505Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1510915933:459461..459633TCONS_00065215-exon-scaffold_433-1510915933:459461..459633Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1510915933:456903..457128TCONS_00065215-exon-scaffold_433-1510915933:456903..457128Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1510915933:456174..456336TCONS_00065215-exon-scaffold_433-1510915933:456174..456336Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1510915933:455520..455575TCONS_00065215-exon-scaffold_433-1510915933:455520..455575Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1510915933:453772..453932TCONS_00065215-exon-scaffold_433-1510915933:453772..453932Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1510915933:452172..453537TCONS_00065215-exon-scaffold_433-1510915933:452172..453537Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1491911889:461515..461908TCONS_00065215-exon-scaffold_433-1491911889:461515..461908Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1491911889:460890..460954TCONS_00065215-exon-scaffold_433-1491911889:460890..460954Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1491911889:460395..460505TCONS_00065215-exon-scaffold_433-1491911889:460395..460505Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1491911889:459461..459633TCONS_00065215-exon-scaffold_433-1491911889:459461..459633Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1491911889:456903..457128TCONS_00065215-exon-scaffold_433-1491911889:456903..457128Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1491911889:456174..456336TCONS_00065215-exon-scaffold_433-1491911889:456174..456336Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1491911889:455520..455575TCONS_00065215-exon-scaffold_433-1491911889:455520..455575Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1491911889:453772..453932TCONS_00065215-exon-scaffold_433-1491911889:453772..453932Clytia hemisphaericaexon
TCONS_00065215-exon-scaffold_433-1491911889:452172..453537TCONS_00065215-exon-scaffold_433-1491911889:452172..453537Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065215-proteinTCONS_00065215-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:452172..461908 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.089	30.4272	12.1824	11.5108	4.90656	3.25868	6.26122	6.56031	9.87798	8.39342	7.7596	10.3714	8.27619	9.40648	12.2754	16.2445	22.1375	21.3177	3.82253	4.4252	9.12983	8.9131	27.0267	24.5565	10.3967	11.395	43.9687	32.9819	19.1074	18.2667
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006680Amidohydro-rel
IPR005920HutI
IPR011059Metal-dep_hydrolase_composite
IPR032466Metal_Hydrolase
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0016812hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
GO:0016810hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0019556histidine catabolic process to glutamate and formamide
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019556 histidine catabolic process to glutamate and formamide
cellular_component GO:0005737 cytoplasm
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
molecular_function GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
Blast
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BLAST of TCONS_00065215 vs. Swiss-Prot (Human)
Match: HUTI (Probable imidazolonepropionase OS=Homo sapiens GN=AMDHD1 PE=1 SV=2)

HSP 1 Score: 539.265 bits (1388), Expect = 0.000e+0
Identity = 261/427 (61.12%), Postives = 334/427 (78.22%), Query Frame = 1 
Query:  148 LIIRHARQIVQICTNREPMICDPKLLQNVSVLECNDVIKGYSIVVDSNGNIADVGSDDVIGEKYKDHTFEKDIDATGKCVLPGFIDGHTHPVWTGDRVHEFAMKLSGATYMDIHKTGGGIGFTVQNVHQSSEEELYQSFVQRLNCMIKCGTTTVEAKSGYGLDAPNEIKMLRVIHRAKKELKETIDISCTYCGAHSIPKGKTMEEATDDVINNQIPQISELVKNGELSVDNIDVFCEKGVFDTDATRRILEAGKAHNMAINFHGDELHPMQSGELGAELGARAISHLEEVSDKGIVAMSDKKVAAVLLPTTAYILRLQPPPARKMIDQGVPVALGSDFNPNAFCYSMPTVMHLACCLLRMSMTEALIGATLNSAYSVGLSETHGSIEVGKVGDLVIVDAPRWEHIIYQFAAHDQTIDYVIKRGIVSY 1428
            L++ +A+Q+V +C   E  +    L ++++VLE      G S+VV  +G I  +G  DVI  ++   TFE+ ID +GKC+LPG +D HTHPVW G+RVHEFAMKL+GATYM+IH+ GGGI FTV+   Q++EEEL++S  QRL CM++ GTT VE KSGYGLD   E+KMLRVI RA++EL   I IS TYCGAHS+PKGKT  EA DD+INN +P++ EL +NGE+ VDNIDVFCEKGVFD D+TRRIL+ GK   + INFHGDELHPM++ ELGAELGA+AISHLEEVSD+GIVAM+  + +A+LLPTTAY+LRL+ P ARKM+D+GV VALGSDFNPNA+C+SMP VMHLAC  +RMSM EAL  AT+N+AY++G S THGS+EVGK GDL+I+++ RWEH+IYQF  H + I+YVI +G + Y
Sbjct:    7 LLLENAQQVVLVCARGERFLARDAL-RSLAVLE------GASLVVGKDGFIKAIGPADVIQRQFSGETFEEIIDCSGKCILPGLVDAHTHPVWAGERVHEFAMKLAGATYMEIHQAGGGIHFTVERTRQATEEELFRSLQQRLQCMMRAGTTLVECKSGYGLDLETELKMLRVIERARRELD--IGISATYCGAHSVPKGKTATEAADDIINNHLPKLKELGRNGEIHVDNIDVFCEKGVFDLDSTRRILQRGKDIGLQINFHGDELHPMKAAELGAELGAQAISHLEEVSDEGIVAMATARCSAILLPTTAYMLRLKQPRARKMLDEGVIVALGSDFNPNAYCFSMPMVMHLACVNMRMSMPEALAAATINAAYALGKSHTHGSLEVGKQGDLIIINSSRWEHLIYQFGGHHELIEYVIAKGKLIY 424
The following BLAST results are available for this feature:
BLAST of TCONS_00065215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HUTI0.000e+061.12Probable imidazolonepropionase OS=Homo sapiens GN=... [more]
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