TCONS_00065231 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065231
Unique NameTCONS_00065231
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065231 ID=TCONS_00065231|Name=TCONS_00065231|organism=Clytia hemisphaerica|type=transcript|length=2362bp
cattttcgtcgtcaattttttagtttcgtcgtcattttttttagtttcgt
cgttaaaaaattaaaggATAATTTAAATGGCACTAATGGGCTTCCGTAAA
CATAGCTTATCTATAAATAGGTCATTTTTTGTTACATATGTTCAGACAGG
CGATATAGGTAAGGTAAGGCAACAACAAGGAAAatgaactttcgaaaaag
tcaagaGGTTTTCCTAATCTTTTCATTTGCAGCAGTTGTTTATGGATACC
AGTCTCCCATATTTGATGCAGGAGACACCTATTCAGATTGTGCGACGAAG
ATCGAAGAACCTTCTTCGTGCAAACAATACAGAAATGTAAGAAAAAGTTA
TCGAACCTTTGATGGTAGATGCAATAATCTCAAGAATCCAACCTTGGGAG
CACGAGATACACCTTTTCGAAGACTTCTACctgCAAGATACATAGATTTG
GACATACCTTACGGCTTCCCAGGAACCTATCCAAAAGTACCTTTAGCTCA
CAAAGTTGCCAAGAACGTCTTCAAAGTTACCAAacatgacaaaaagaata
aagaagGACTTTCAGTTCTCTTCATGGTATTCGGACAAATTTTAACACAT
GATGTTGGTCGAATGAAGTTTGGTGATTGTCCAGTGAACCCatttatttt
caactgtgAAGCAAAAGAATTTAAACATTCGTGTTTCGCTATGTATTTTG
AAGAAGGAAAACCTGAATGTACATTCTTCGCTAAAGGCAAAGCTTTATGT
CAAGAGAAGAGACCGACTGAACGGCAACAAGTGAACGAATACACGTCGTT
TGTCGATATGTCGAATATATATGGTAACAACGACGTGGTTGCTAAGCGGT
TGCGGAGAAATGATGGTAGTGGAGAGCTTATAACCATTGGTGATAACATG
CTTCCATTTCTCCCAAACAAGCCTCTTTGTGTTTCGCGGCCTCAATGCTC
TGATGCAGGAGATGTGGATGTAGATCAAAACACTGCATTATGGTCTATTC
ATGTGGTCTGGGTTCGTGAACATAATCGCGTCGCCAAAGAGCTGAAACAA
TGTCATCCCGATTGGGACGGCGATAAGGTTTATCAGGAAGCACGGAAAAT
TGTGATCGCAGAATATCAACATATCACTTACAATGAGTATGTACCGAAGC
TGGCGGATATTGAAAGATATAGTGGATATAAACCATATGTGGAGCCTTCC
ACCATTAATGCCTTCAATAGCGCCGCTTTTCGATTTGCTCATAGCACTGT
ACCCAATTTTTTCCACCGCTTAAATgcaaattatgataaagcgtacCCAA
GTTTAACCACACAAGAGATTTTCGGAGATTTACGAGAAATTCGTAGTAAT
GGTATCGAGCCTTTATGTTTTGGTCTCATTGGAAATCAATCAACTCCAGC
TAATTCTGAATTCGCATTCGCTATGGCCAGGAAAATCCTTTTACCTCCTA
GTTTTAAGGGTCCCAGCTCCCACCTCGATCTTTCAGCTTTCAATATTCAC
CGAGGCCGAGATACTGGTATGCAAACATATGGAGAATGGAGAAAATATTG
TGGGTTGAGACCAATCAAGAATTTCCGACAGCTTCGACGATACATGCCGA
CCAAAGTTGCTAAAAGATTTGCTAAAGTCTATGACCACCCTAATGATATT
GATTTGTTTGCTGCTGGAGTCTCGGAAAATCATGTACCTGGGTTTGCAGT
TGGTCCTACATTTCAATGTTTGATAAAAGAGCAGTTTATGAATCTGAGGG
ATGGCGATCGTTATTTCTACCTGAAACGAGGCGTTTTTACACCACCACAA
CGCCGCCAGTTGAAGAAAGTTACAATGGCAAGAATCCTCTGCGATAATCT
AAAGGGGATGGTGTCCATCAACAAATAtgcttttattgaaacaaaattgA
AACGTACCTTATGTGAAGACATCCCGAAGCTTGATTTGCGTTATTTCTAG
CCTTACTTATTGATTTGGCACCGTTAAGTAAACGTTATTTTTTAACCCTG
CAATGACTTGCGGGTAAAACTTTCAAacaaacttcgatcaaagatgacgg
atatagcttggtctagTATTATAAAAAACAGTAACTGGCCGTAACTGGAA
CACTGTGAAACATTCAAATTGacaattaaatttttaagtaACCAACCGCT
Cttatcacttttatttttattaactgtttttttaacttttttgtactttg
atgggattaaattttgcggttttcacggatttgggtgtcatccacgaaat
taattccaatgaaaatttagaaagGCTTTATTGgcgaaatattttcagca
aaacctgttttaaaatgtttactaGCATTAAAGAAGCGCTAAaaatgcgt
atttcaacaaca
Run BLAST on NCBI

protein sequence of TCONS_00065231-protein

>TCONS_00065231-protein ID=TCONS_00065231-protein|Name=TCONS_00065231-protein|organism=Clytia hemisphaerica|type=polypeptide|length=588bp
MNFRKSQEVFLIFSFAAVVYGYQSPIFDAGDTYSDCATKIEEPSSCKQYR
NVRKSYRTFDGRCNNLKNPTLGARDTPFRRLLPARYIDLDIPYGFPGTYP
KVPLAHKVAKNVFKVTKHDKKNKEGLSVLFMVFGQILTHDVGRMKFGDCP
VNPFIFNCEAKEFKHSCFAMYFEEGKPECTFFAKGKALCQEKRPTERQQV
NEYTSFVDMSNIYGNNDVVAKRLRRNDGSGELITIGDNMLPFLPNKPLCV
SRPQCSDAGDVDVDQNTALWSIHVVWVREHNRVAKELKQCHPDWDGDKVY
QEARKIVIAEYQHITYNEYVPKLADIERYSGYKPYVEPSTINAFNSAAFR
FAHSTVPNFFHRLNANYDKAYPSLTTQEIFGDLREIRSNGIEPLCFGLIG
NQSTPANSEFAFAMARKILLPPSFKGPSSHLDLSAFNIHRGRDTGMQTYG
EWRKYCGLRPIKNFRQLRRYMPTKVAKRFAKVYDHPNDIDLFAAGVSENH
VPGFAVGPTFQCLIKEQFMNLRDGDRYFYLKRGVFTPPQRRQLKKVTMAR
ILCDNLKGMVSINKYAFIETKLKRTLCEDIPKLDLRYF
Run BLAST on NCBI

transcript from alignment at scaffold_433:531342..539453-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065231 ID=TCONS_00065231|Name=TCONS_00065231|organism=Clytia hemisphaerica|type=transcript|length=8112bp|location=Sequence derived from alignment at scaffold_433:531342..539453- (Clytia hemisphaerica)
CATTTTCGTCGTCAATTTTTTAGTTTCGTCGTCATTTTTTTTAGTTTCGT
CGTTAAAAAATTAAAGGATAATTTAAATGGCACTAATGGGCTTCCGTAAA
CATAGCTTATCTATAAATAGGTCATTTTTTGTTACATATGTTCAGACAGG
CGATATAGGTAAGGTAAGGCAACAACAAGGAAAATGAACTTTCGAAAAAG
TCAAGAGGTTTTCCTAATCTTTTCATTTGCAGCAGTTGTTTATGGATACC
AGTCTCCCATATTTGATGCAGGTAGGTTAACACCGATTGGAATTTCATCG
TTTACAACCCCGTGGGGGGTACTAGGGTTGATGGATGCTGGGTATGGGTG
CCGGACCTCCAAACCCTGACCCTTAGAGACACTTTATTGAAAATATTTCT
TCCACTTTTAAAGTCCTACAATTCTTTCTCTAAAAATCAATAAAATTTCC
TAAAAATCGTGAATTTTCCAACCCTTAGAGAGACTTTGAAAGGTGAAAAA
ACCGACCCTTATAGCACACAAATACCGAGCACCCATTTTTGCCTAAGTAC
CCCCCGGCGGTTTTATGACAGTTTCTTCTTAACGGTGACTTTCAATATTT
TCGAATAACTAGAGCGTATCAAACAGAAGAACGTCGAATTAGAGAATGTC
AACTGTAGATATTATTAAAAAAAAAGTGAAAAAATCATGATATCAAAATC
CTGAAAAGCACAGGTCCACATCCACATCAAACATTCCTGTCTCACGCCCC
GATGGGGCTTTTTTTCCTCAGTGGGGATAAAGACTCCTATTGAAATCCCA
ATGGGGATAGAAATTCCAAGGTTAAAAATCCATTGGGATGGTTTTTGAGT
GCAATTCTTTAAACATTGAATTTCGAGTGGGGATGAAATCAAAGTGAATT
TCCAGGGTATTTTCCCACCGGGGACAAAATTTCTGCCAAATTTTCCAGTG
GGGCAGGGGTCCCGGAGGGTCTGTGGCACAGGGTTATAATTAATGTTGAA
CTGAGGCCGATAGTAATGGGTTTTGCACCGTTAGGACGTCACGAGATTCA
TCTTTCGAGTCTGGAAAATCCTCGTTTGAAAATGTAAAACTTCACGAGTA
GTTAGATGACGTCACCAGGAAATATGGCGGACATTAGGCCATATTGAACA
ATAAACCATCCGAGTTTTTGATTTTTCAAAAAAAGCGATGTATTGTGGGA
TTGTTTCGGGAGTATTACAATACAATTCCCACGAGGAATTCCTAAGAGAT
TTCTGGGAGTTTCTAAACGTCGACCAGAAATGACGACCACGACCGGCGAC
CACGACCAGCGACCAGATAAATTTGGGTTATCGAGTTTTTTTCCTTTCTC
CAACGTAGAGTATCTCTCCTAATCATTTAAATATATATCATTTTGAAGAG
TAAGCTCACCCCTGTCTCATATATTTAAAGCCACGTGCCAAATACGTAAA
AGAACCATTTCGACGCTCTCGGAGCTTGATTATGGTGTCCATTTCTATCC
TTTTGTATTATCAGCATCAAAATAATTAGTGGGACATAATTTTCATAAAG
GCATCTGATTCAGCTTAATTAAAATACTTGGCGTAACAAAGCTTACAAAC
ATCAATCATACTTAATGACCCTGTCAATATTTTTGTCAAATAGTGTCACT
TTGTCAAGAAATGACTGGTTACTTCAAAGGTCACTTTTTAGTATCCGAGG
ACTCGATTAAAACATTCTCTACGGTGGAGAGAGCAGATAAACTCGATAAT
CCAAATTTATCTGGTCGCCGGTCGTGGTCGCTGGTCGTGGTCGCCATTTC
TGGTCGATGTTTAGAAACTCCCGAGATTTCTATTGTAATACTTCCGAAAC
AATCTCACAATGCATCGCTTTTTTAGAAAAATCAAAAACTCCGATAAGAT
CTATTTTAGGGAAAGAAGTTTTACATTTATCTCCGCTCTTTTCGGTAACA
ATGTATATACTATCTTATTTTTTGGACCTACCCCGGTGGGGTGGAGGTCC
TATAAATTAACCTTTGTCCGTTCGTTCGTTCGTCCGTTCGTTCGTTATTA
GCTTTCCTCGTGATTGGCTCATTAGTTTTTTCTGATTTTTTGCACAAAGA
TGTGTAACTATAAACCCTCGAATGTGACGGAGCCCGATTTTCGAAAAAAA
AATTTTTGGGCAAATTTGGGCAAAAAAACGGCTAAAAAACGGGTTTTTTG
GACTTTGTGATCATTAACTTTTTGGACCTACCCCGGTGGGGTAGAGGTCC
TATAAATTAACCGATGTCCGTCCGTTCGTTCGTTCGTCCGTCCGTCCGTC
TGTTACCAGCTTTTNNNNNNNNNNNNNNNNNNTCCGTCTGTTACCAGCTT
TTCTCAGGATTGGCTCATTAGTTTTTTTTGATTTTTGGCACAATGATGCA
AAATGGCAATGCCCAAAATGTGATGGAGCCCGATTTTTGAGAAAAAATTT
ATTTGGGCAAATTTGGGCCAAAAACTATAGTAGGGGGAATTTTGTTCGAT
TTTTTGGAATCGCTTGACTGTTTTGTTAGAAGCACTTGTTGTACATTTTT
GGAAAGCTAAGGGGTAGAGGAATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAACGCTATATCATCTGACTGATTGTTTTCATTTTT
CTCCTTATTGCCTTATTATCTAGCTTTCATCATCAGGTAGGTCCATTCAG
CATGTTGCTTGTTCTGATTTTTTTAATAAAAGTAGGGTACCATCATAGAT
AAAAGATGGCTCAAGCAGATTTTTTCAAAAAAATTTTGTTGGCTCAAAAA
ACGCATGTTTATCTATAAGAATCACTATTAATAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC
TTTTCTCGAGATTAGCTCTTTGATTCTTTATGATTTTTTGCACAAAGATG
CATAACTATAAACCCTCGAATGTGACGGAGCCCGATTTTGGAGAAAAAAA
AAATTGGGCAAATTTGGGCCAAAAAACGGCTAAAAAACGGGTTTTTTGGA
CTTTGTGAAAAATTGGATCATTAACTTTTTCGGATTTTTTGCATGAAAGT
AGGGTACCATCATAGGTAAAAGATGGCTCAATCAGATTTTTTCAAAAAAA
TTTTGTTGGCTCAAAAAACACATGTTTATCTATAAGAATCACTATTAATA
AGCATACATCAATGTTCTTAGCCAAATTACTCAATTTTTTGATGAGATAG
ATGTTTTTTTTTTGCTCACGAAGTCTTGAATATGAAAGAATATTTCAAGA
GCATGAAATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TGTGTTCTGAATGATTGTTTAATGGTCACGTTCACGTAGATATCAATTAT
ATATGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTA
TTTAGGAGACACCTATTCAGATTGTGCGACGAAGATCGAAGAACCTTCTT
CGTGCAAACAATACAGAAATGTAAGAAAAAGTTATCGAACCTTTGATGGT
AGATGCAATAATCTCAAGAATCCAACCTTGGGAGCACGAGATACACCTTT
TCGAAGACTTCTACGTAAGTATTGATACATTCATCTCACAATTCAAAGCC
GTAGTCACAATTTGGTCTAGGGGGCAGCTTAGCGAAACTACAATCGAAGT
CATAATATTTGAGGAAAAAGGGAAATTCCCACGAAAGCTTACAACCACAA
ACGATTTGGAAGCGCTCTAAATTAGATTAGACGGGTAGAGTTTTAACGCT
AGACTTAACACTTATGATTATAGGATCTGAGGAACTAAAAGTCCAAGAAT
GGTCCAATAGGGCTCAGTATAAACCCATCCCAATTTACCCAAAAGCGACT
TTTTTGCCCGAACTTTAAGTTGCTGAAAACGAGGAATTAACCAAAATTCC
CAATATATTTTGACCGAGATTGTAGTTAACCTATTTTATTAGAATGATTG
ATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGAT
TGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTTTTAGCTGC
AAGATACATAGATTTGGACATACCTTACGGCTTCCCAGGAACCTATCCAA
AAGTACCTTTAGCTCACAAAGTTGCCAAGAACGTCTTCAAAGTTACCAAA
CATGACAAAAAGAATAAAGAAGGACTTTCAGTTCTCTTCATGGTATTCGG
ACAAATTTTAACACATGATGTTGGTCGAATGAAGTTTGGTGATTGTCCAG
TGAACCCGTGAGTCGCTTTTCTCTTGCGCTTTCACTCTCAAAAGCATTTT
CTTTGAGTTTAAATATACGTACAATAATATTATAAATGTTAAAATTTTCT
GTCGCTTTTCTCTTGCGCTTTAATTTTTTCGTTACTGTAATCAAGGCAGT
AATCAGGCTTACCCAAAAGACTAAATCCGTAAAAAAATATCGGCTTTGGT
TCTAGAACGAAAGATCATTTGGAAATTCATTCTACGGAATACTAGGGAAC
ACACACTGTTCAAAATTGAGATGTTTATTCGCTTTCTTTGTACTATCTTT
TAGATTTATTTTCAACTGTGAAGCAAAAGAATTTAAACATTCGTGTTTCG
CTATGTATTTTGAAGAAGGAAAACCTGAATGTACATTCTTCGCTAAAGGC
AAAGCTTTATGTCAAGAGAAGAGACCGACTGAACGGCAACAAGTGAACGA
ATACACGTCGTTTGTCGATATGTCGAATATATATGGTAACAACGACGTGG
TTGCTAAGCGGTTGCGGAGAAATGATGGTAAGCTAAACCTTGATTGTGTA
TTTTAGTCATTTTGATGTGTCGATTGGTATGTGAAAGAAAGGGGGTTTGT
ACTTTTACGGCTTTGACGAAAAAAGAGGTGGGAAGACGGTATTTTAAGAT
CAGCAGTTTGCATGATGGCTTGATCATGATATTGGATGCATTGGATGCAT
AGTGCAAAAATTAGGGCTATTTTGCTCTATTTTTACGTGATGACAAATAT
CAGCGATTTTCGTGATGCATGATGGAGAAAAAAATTTGCGTGATGTAATG
CACCTTTAATGAAAAAAGATTTTTGTATTATTTTCTATTAAAGGTTTTAT
TTAAAGTGTTCCCGTTTCATATCAGACACATATTTCATATCAGGACAGTT
TCTGCCTATTGTCATATTAGGCTGATATAAACAAAAAAAAATGTTTTTCT
TTCTCNGACAGTTTCTACCTATTGTCATATTAGGCTGATATAAACAAAAA
AAATGTTTTTCTTTCTCTCTTTCTGATCATGTTGCTCCACATCCGTGTCA
ATCCAATGTGAAAAAGCTTGTAAATTAGAATTGATGAGTAAGCAAACGAT
ATCACTCTTATTTAAAAACAAAACCTTTAAACAAAACCTTTAAACAAAAC
CTTTAATACGGAACACACCCAATGCAAATCCTTAACACATTTCTATTTTT
CTTTTGATTTGACAGGTAGTGGAGAGCTTATAACCATTGGTGATAACATG
CTTCCATTTCTCCCAAACAAGCCTCTTTGTGTTTCGCGGCCTCAATGCTC
TGATGCAGGAGATGTGGATGTAGATCAAAACACTGCATTATGGTCTATTC
ATGTGGTCTGGGTTCGTGAACATAATCGCGTCGCCAAAGAGCTGAAACAA
TGTCATCCCGATTGGGACGGCGATAAGGTTTATCAGGAAGCACGGAAAAT
TGTGATCGCAGAATATCAACATATCACTTACAATGAGTATGTACCGAAGC
TGGCGGATATTGAAAGATATAGTGGATATAAACCATATGTGGAGCCTTCC
ACCATTAATGCCTTCAATAGCGCCGCTTTTCGATTTGCTCATAGCACTGT
ACCCAATTTTTTCCACCGCTTAAATGCAAATTATGATAAAGCGTACCCAA
GTTTAACCACACAAGAGATTTTCGGAGATTTACGAGAAATTCGTAGTAAT
GGTATCGAGCCTTTATGTTTTGGTCTCATTGGAAATCAATCAACTCCAGC
TAATTCTGAATTCGCATTCGCTATGGCCAGGAAAATCCTTTTACCTCCTA
GTTTTAAGGGTCCCAGCTCCCACCTCGATCTTTCAGCTTTCAATATTCAC
CGAGGCCGAGATACTGGTATGCAAACATATGGAGAATGGAGAAAATATTG
TGGGTTGAGACCAATCAAGAATTTCCGACAGCTTCGACGATACATGCCGA
CCAAAGTTGCTAAAAGATTTGCTAAAGTCTATGACCACCCTAATGATATT
GATTTGTTTGCTGCTGGAGTCTCGGAAAATCATGTACCTGGGTTTGCAGT
TGGTCCTACATTTCAATGTTTGATAAAAGAGCAGTTTATGAATCTGAGGG
ATGGCGATCGTTATTTCTACCTGAAACGAGGCGTTTTTACACCACCACAA
CGCCGCCAGTTGAAGAAAGTTACAATGGCAAGAATCCTCTGCGATAATCT
AAAGGGGATGGTGTCCATCAACAAATATGCTTTTATTGAAACAAAATTGA
AACGTACCTTATGTGAAGACATCCCGAAGCTTGATTTGCGTTATTTCTAG
CCTTACTTATTGATTTGGCACCGTTAAGTAAACGTTATTTTTTAACCCTG
CAATGACTTGCGGGTAAAACTTTCAAACAAACTTCGATCAAAGATGACGG
ATATAGCTTGGTCTAGTATTATAAAAAACAGTAACTGGCCGTAACTGGAA
CACTGTGAAACATTCAAATTGACAATTAAATTTTTAAGTAACCAACCGCT
CTTATCACTTTTATTTTTATTAACTGTTTTTTTAACTTTTTTGTACTTTG
ATGGGATTAAATTTTGCGGTTTTCACGGATTTGGGTGTCATCCACGAAAT
TAATTCCAATGAAAATTTAGAAAGGCTTTATTGGCGAAATATTTTCAGCA
AAACCTGTTTTAAAATGTTTACTAGCATTAAAGAAGCGCTAAAAATGCGT
ATTTCAACAACA

Coding sequence (CDS) from alignment at scaffold_433:531342..539453-

>TCONS_00065231 ID=TCONS_00065231|Name=TCONS_00065231|organism=Clytia hemisphaerica|type=CDS|length=1767bp|location=Sequence derived from alignment at scaffold_433:531342..539453- (Clytia hemisphaerica)
ATGAACTTTCGAAAAAGTCAAGAGGTTTTCCTAATCTTTTCATTTGCAGC
AGTTGTTTATGGATACCAGTCTCCCATATTTGATGCAGGAGACACCTATT
CAGATTGTGCGACGAAGATCGAAGAACCTTCTTCGTGCAAACAATACAGA
AATGTAAGAAAAAGTTATCGAACCTTTGATGGTAGATGCAATAATCTCAA
GAATCCAACCTTGGGAGCACGAGATACACCTTTTCGAAGACTTCTACCTG
CAAGATACATAGATTTGGACATACCTTACGGCTTCCCAGGAACCTATCCA
AAAGTACCTTTAGCTCACAAAGTTGCCAAGAACGTCTTCAAAGTTACCAA
ACATGACAAAAAGAATAAAGAAGGACTTTCAGTTCTCTTCATGGTATTCG
GACAAATTTTAACACATGATGTTGGTCGAATGAAGTTTGGTGATTGTCCA
GTGAACCCATTTATTTTCAACTGTGAAGCAAAAGAATTTAAACATTCGTG
TTTCGCTATGTATTTTGAAGAAGGAAAACCTGAATGTACATTCTTCGCTA
AAGGCAAAGCTTTATGTCAAGAGAAGAGACCGACTGAACGGCAACAAGTG
AACGAATACACGTCGTTTGTCGATATGTCGAATATATATGGTAACAACGA
CGTGGTTGCTAAGCGGTTGCGGAGAAATGATGGTAGTGGAGAGCTTATAA
CCATTGGTGATAACATGCTTCCATTTCTCCCAAACAAGCCTCTTTGTGTT
TCGCGGCCTCAATGCTCTGATGCAGGAGATGTGGATGTAGATCAAAACAC
TGCATTATGGTCTATTCATGTGGTCTGGGTTCGTGAACATAATCGCGTCG
CCAAAGAGCTGAAACAATGTCATCCCGATTGGGACGGCGATAAGGTTTAT
CAGGAAGCACGGAAAATTGTGATCGCAGAATATCAACATATCACTTACAA
TGAGTATGTACCGAAGCTGGCGGATATTGAAAGATATAGTGGATATAAAC
CATATGTGGAGCCTTCCACCATTAATGCCTTCAATAGCGCCGCTTTTCGA
TTTGCTCATAGCACTGTACCCAATTTTTTCCACCGCTTAAATGCAAATTA
TGATAAAGCGTACCCAAGTTTAACCACACAAGAGATTTTCGGAGATTTAC
GAGAAATTCGTAGTAATGGTATCGAGCCTTTATGTTTTGGTCTCATTGGA
AATCAATCAACTCCAGCTAATTCTGAATTCGCATTCGCTATGGCCAGGAA
AATCCTTTTACCTCCTAGTTTTAAGGGTCCCAGCTCCCACCTCGATCTTT
CAGCTTTCAATATTCACCGAGGCCGAGATACTGGTATGCAAACATATGGA
GAATGGAGAAAATATTGTGGGTTGAGACCAATCAAGAATTTCCGACAGCT
TCGACGATACATGCCGACCAAAGTTGCTAAAAGATTTGCTAAAGTCTATG
ACCACCCTAATGATATTGATTTGTTTGCTGCTGGAGTCTCGGAAAATCAT
GTACCTGGGTTTGCAGTTGGTCCTACATTTCAATGTTTGATAAAAGAGCA
GTTTATGAATCTGAGGGATGGCGATCGTTATTTCTACCTGAAACGAGGCG
TTTTTACACCACCACAACGCCGCCAGTTGAAGAAAGTTACAATGGCAAGA
ATCCTCTGCGATAATCTAAAGGGGATGGTGTCCATCAACAAATATGCTTT
TATTGAAACAAAATTGAAACGTACCTTATGTGAAGACATCCCGAAGCTTG
ATTTGCGTTATTTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040892XLOC_040892Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065231-exon-scaffold_433-1575043694:539183..539453TCONS_00065231-exon-scaffold_433-1575043694:539183..539453Clytia hemisphaericaexon
TCONS_00065231-exon-scaffold_433-1575043694:534740..534898TCONS_00065231-exon-scaffold_433-1575043694:534740..534898Clytia hemisphaericaexon
TCONS_00065231-exon-scaffold_433-1575043694:534047..534257TCONS_00065231-exon-scaffold_433-1575043694:534047..534257Clytia hemisphaericaexon
TCONS_00065231-exon-scaffold_433-1575043694:533527..533750TCONS_00065231-exon-scaffold_433-1575043694:533527..533750Clytia hemisphaericaexon
TCONS_00065231-exon-scaffold_433-1575043694:531342..532838TCONS_00065231-exon-scaffold_433-1575043694:531342..532838Clytia hemisphaericaexon
TCONS_00065231-exon-scaffold_433-1510915933:539183..539453TCONS_00065231-exon-scaffold_433-1510915933:539183..539453Clytia hemisphaericaexon
TCONS_00065231-exon-scaffold_433-1510915933:534740..534898TCONS_00065231-exon-scaffold_433-1510915933:534740..534898Clytia hemisphaericaexon
TCONS_00065231-exon-scaffold_433-1510915933:534047..534257TCONS_00065231-exon-scaffold_433-1510915933:534047..534257Clytia hemisphaericaexon
TCONS_00065231-exon-scaffold_433-1510915933:533527..533750TCONS_00065231-exon-scaffold_433-1510915933:533527..533750Clytia hemisphaericaexon
TCONS_00065231-exon-scaffold_433-1510915933:531342..532838TCONS_00065231-exon-scaffold_433-1510915933:531342..532838Clytia hemisphaericaexon
TCONS_00065231-exon-scaffold_433-1491911889:539183..539453TCONS_00065231-exon-scaffold_433-1491911889:539183..539453Clytia hemisphaericaexon
TCONS_00065231-exon-scaffold_433-1491911889:534740..534898TCONS_00065231-exon-scaffold_433-1491911889:534740..534898Clytia hemisphaericaexon
TCONS_00065231-exon-scaffold_433-1491911889:534047..534257TCONS_00065231-exon-scaffold_433-1491911889:534047..534257Clytia hemisphaericaexon
TCONS_00065231-exon-scaffold_433-1491911889:533527..533750TCONS_00065231-exon-scaffold_433-1491911889:533527..533750Clytia hemisphaericaexon
TCONS_00065231-exon-scaffold_433-1491911889:531342..532838TCONS_00065231-exon-scaffold_433-1491911889:531342..532838Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065231-proteinTCONS_00065231-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:531342..539453 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.28124	3.94547	4.93392	4.42015	0.981711	0.659958	2.13351	2.16186	1.09172	1.35152	0.683234	0.565076	20.7049	26.8248	64.4198	22.4753	3.02616	15.477	0.777632	0.708285	0.256531	0.330798	1.05479	0.850029	0.725372	0.394742	0.482648	0.511032	0.397034	0.371989
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019791Haem_peroxidase_animal
IPR010255Haem_peroxidase
Vocabulary: Biological Process
TermDefinition
GO:0006979response to oxidative stress
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0020037heme binding
GO:0004601peroxidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006979 response to oxidative stress
molecular_function GO:0020037 heme binding
molecular_function GO:0004601 peroxidase activity
Blast
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BLAST of TCONS_00065231 vs. Swiss-Prot (Human)
Match: PERE (Eosinophil peroxidase OS=Homo sapiens GN=EPX PE=1 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 4.886e-88
Identity = 194/609 (31.86%), Postives = 305/609 (50.08%), Query Frame = 1 
Query:  262 FDAGDTYSDCATKI-EEPSSCK---QYRNVRKSYRTFDGRCNNLKNPTLGARDTPFRRLLPARYID-LDIPYGFPGTYPK----VPLAHKVAKNVFKVTKHDKKNKEGLSVLFMVFGQILTHDV-------GRMKFGDCPVNPFIFNCEAKEFKHS-CFAMYFEEGKP------ECTFFAKGKALCQEKRPTERQQVNEYTSFVDMSNIYGNNDVVAKRLRRNDGSGELITI-------GDNMLPF--LPNKPLCVS----RPQCSDAGDVDVDQNTALWSIHVVWVREHNRVAKELKQCHPDWDGDKVYQEARKIVIAEYQHITYNEYVPKLADIER-------YSGYKPYVEPSTINAFNSAAFRFAHSTVPNFFHRLNANYDKAYPSL---TTQEIFGDLREIRSNGIEPLCFGLIGNQSTPANSEFAFAMARKILLPPSFKGPSS-HLDLSAFNIHRGRDTGMQTYGEWRKYCGLRPIKNFRQLRRYMPTK-VAKRFAKVYDHPNDIDLFAAGVSENHVPGFAVGPTFQCLIKEQFMNLRDGDRYFYLKRGVFTPPQRRQLKKVTMARILCDNLKGMVSINKYAFIETKLKRTL--CEDIPKLDL 1938
            F+  D  ++   ++  + S C    Q       YRT  GRCNN + P LGA +    R LPA Y D L +P+G+  +  +    +PL   V+  + +       +  G +++FM +GQ + HD+        R+ F          +CE    +   CF +      P      +C  F +    C + +   R Q+N  TSFVD S +YG+   ++ RLR       L+ I       G  +LPF  L + P  ++    R  C  AGD    +   L ++H +++REHNR+A EL++ +P W+GDK+Y EARKI+ A  Q ITY +++P +    R       Y GY   V+P   N F + AFRF H+ +  F  RL++ Y  + P+     +   F   R +   GI+P+  GL+   +TPA      AM    L    F+      LDL+A N+ R RD G+  Y  WR++CGL   +N  QL R +  + +A++F  +Y  P++ID++   ++E  +PG  VGP   CL + QF   RDGDR+++ KRGVFT  QR+ L +++++RI+CDN  G+ ++++  F      R    C  IP+L+L
Sbjct:  112 FNVTDVLTEPQLRLLSQASGCALRDQAERCSDKYRTITGRCNNKRRPLLGASNQALARWLPAEYEDGLSLPFGWTPSRRRNGFLLPLVRAVSNQIVRFPNERLTSDRGRALMFMQWGQFIDHDLDFSPESPARVAFTAG------VDCERTCAQLPPCFPIKIPPNDPRIKNQRDCIPFFRSAPSCPQNKNRVRNQINALTSFVDASMVYGSEVSLSLRLRNRTNYLGLLAINQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSTETPKLAAMHTLFMREHNRLATELRRLNPRWNGDKLYNEARKIMGAMVQIITYRDFLPLVLGKARARRTLGHYRGYCSNVDPRVANVF-TLAFRFGHTMLQPFMFRLDSQYRASAPNSHVPLSSAFFASWRIVYEGGIDPILRGLM---ATPAKLNRQDAMLVDELRDRLFRQVRRIGLDLAALNMQRSRDHGLPGYNAWRRFCGLSQPRNLAQLSRVLKNQDLARKFLNLYGTPDNIDIWIGAIAEPLLPGARVGPLLACLFENQFRRARDGDRFWWQKRGVFTKRQRKALSRISLSRIICDN-TGITTVSRDIFRANIYPRGFVNCSRIPRLNL 709
The following BLAST results are available for this feature:
BLAST of TCONS_00065231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PERE4.886e-8831.86Eosinophil peroxidase OS=Homo sapiens GN=EPX PE=1 ... [more]
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