TCONS_00065256 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065256
Unique NameTCONS_00065256
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065256 ID=TCONS_00065256|Name=TCONS_00065256|organism=Clytia hemisphaerica|type=transcript|length=1575bp
AAGGAAAAGCTTCCAAAACAACTTCAAAGATGGTTGCAACGAAGACCTTA
CCTCTGGTGCTGGGGTCCCTCTTGGGAATCATGCTGGCCATTCTGGTGGT
CGTTTTGTTCTTGTTCTACAAAAAGCGAAAGGAGAGCATCGAATTCAGCA
TACCGTTGGAGAAGATGACCAGAGGGCTGAAAAGCTCTTTGAAAAGGAGA
TCAACTTCGTCGAAGAACAGCAAAAGTAGTAACGACAGTATACACATCAA
ACCACAAGGAACGCCAATTTTGAGGGACACTCAATTCTGGGTACCGGAGG
TATACAACTCCATCATCCAGCCCTCGTCCGCTGCTCCCATTCGCAAAACG
AGTCGATTGCAATCGACACTGGATCGAGAAATTTATTCGAAAGCGCACGA
CACCTCTTACCTTCAAGCAGCTCAGCCTGAGGTTTTTGACGGTAAAAACG
AGAAACGACCTTCGACAATCTCCATGATGCGACGTAACACGTCATCGCTG
AAACGTGGTGATATCGCGCGACGGTTAGCCAGTGAACAAGGCAGTCGTGG
CATGCTTAACTTCTCAATACAATATAAACAAGCAACcgcCAAACTAACAA
TCATCATATTGAAAGCCGAAGGATTGCCGGTTCGAAAAGACGGTGAGTTT
TGTGATCCGTTTGTTGACATTCAAGTCAGTCCGTACTACAAGCGTCGAAT
GCATTCAGAAGTTcatcaaaaaactcaaaaccCTGTCTTCAACCAATCGT
TTGATTCGGAGGTGCCGCCATACGAGGTCCGTGGTCAAACGATACATTTC
ACCGTGTTAGATTTTAGTCAGCAGTTAGCCCACGAACCGATTGGCTCAGT
GGCTTTTAAGATGGACAGTTTGGACAGGGATGCTTTCAACGCGGGCAAAG
AATTCACACTGTGGAAGAAAATTGATAAGGATGCTTTGGAATCAGGTGAT
CGACTAGACGGTAAACGCGAATACCCAATGGAAATGGAGCTAGACAGGAC
AGCCATGTTGTTACTGCTCAGTGTCAATTATTTGAAAATCGCCGAACGAT
TGACGGTGACGGTGAATAAAGCACGCAATCTACTACTGGTCGACCGCAAA
GGCAAATTAGATGGCATGTCATGCATAATCCCTCCTATTAGGACTCCTAT
TTCGAAACGGAAAAAATCCCGCAAAAacgggaaaatcggggaaattgaAC
ACGAAGATCTTGAAAATAATAATGAGAATGGGAAACGAAGTGTACTGGAT
CATCCGTACGTCCAAGTTACTCTAAAGCATTTCGGACGCGTGCTCAAAAA
ATTACGGACAGGCGTGGTGAAACACGAAACGAATCCTGTATTTAATAAGA
CTTTATTATTCGATGTTCCAAAGCACCTTGTAGACTCTGTATCACTGACA
GTAAAATTACGTCATCATAACGAACTTGGGCGTGACCGGACTTTTGCTAT
TTTAACGGTGGGTAAAAATGCGGTGGGGTCCGGTTCGGAGCAATGGACGG
ATATGTTGAATTCATCGGAGACCGTACAACGCTGGCACCGTTTGATACCT
ATTGAACCGGTTGATGATTAAAATA
Run BLAST on NCBI

protein sequence of TCONS_00065256-protein

>TCONS_00065256-protein ID=TCONS_00065256-protein|Name=TCONS_00065256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=522bp
GKASKTTSKMVATKTLPLVLGSLLGIMLAILVVVLFLFYKKRKESIEFSI
PLEKMTRGLKSSLKRRSTSSKNSKSSNDSIHIKPQGTPILRDTQFWVPEV
YNSIIQPSSAAPIRKTSRLQSTLDREIYSKAHDTSYLQAAQPEVFDGKNE
KRPSTISMMRRNTSSLKRGDIARRLASEQGSRGMLNFSIQYKQATAKLTI
IILKAEGLPVRKDGEFCDPFVDIQVSPYYKRRMHSEVHQKTQNPVFNQSF
DSEVPPYEVRGQTIHFTVLDFSQQLAHEPIGSVAFKMDSLDRDAFNAGKE
FTLWKKIDKDALESGDRLDGKREYPMEMELDRTAMLLLLSVNYLKIAERL
TVTVNKARNLLLVDRKGKLDGMSCIIPPIRTPISKRKKSRKNGKIGEIEH
EDLENNNENGKRSVLDHPYVQVTLKHFGRVLKKLRTGVVKHETNPVFNKT
LLFDVPKHLVDSVSLTVKLRHHNELGRDRTFAILTVGKNAVGSGSEQWTD
MLNSSETVQRWHRLIPIEPVDD
Run BLAST on NCBI

transcript from alignment at scaffold_435:123574..129024+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065256 ID=TCONS_00065256|Name=TCONS_00065256|organism=Clytia hemisphaerica|type=transcript|length=5451bp|location=Sequence derived from alignment at scaffold_435:123574..129024+ (Clytia hemisphaerica)
AAGGAAAAGCTTCCAAAACAACTTCAAAGGTAATGTACGtttttttggat gatttttttATACTTATCTCCTGGTCAGCTTGGTTCAGATAACAGAATTT GCTTTTGATAAAACTCAATTGTTCAAATAACGGTGAACCTTTTTATGTTT ATTATGACTAGATGGTTGCAACGAAGACCTTACCTCTGGTGCTGGGGTCC CTCTTGGGAATCATGCTGGCCATTCTGGTGGTCGTTTTGTTCTTGTTCTA CAAAAAGCGAAAGGAGAGCATCGAATTCAGCATACCGTTGGAGAAGATGA CCAGAGGGCTGAAAAGCTCTTTGAAAAGGAGATCAACTTCGTCGAAGAAC AGCAAAAGTAGTAACGACAGTATACACATCAAACCACAAGGAGTGAGTAg tgatttgtttttaaataccGTTTTATGATGGTATAGTCTCTTGgaagttc ttttcttttaaatcctgaagtTATTTTATGTATCAATGTTATGACGTTCT GTAAAGTTTTTATCAAACTTTTGATTTTGAGCAACAAAACCTGAATCTAG GCTTCTTCCACATCGACAATTTGCTGTGTTTCAAATTATTACAAACATTT CGAGTAAACCCTTTCAATTGCCGAGCCGAACAGTGTTAGATGGGTAATAT TAATGGTCTCGATTCTCTTAGAGATTTTGGATGAAAGTTTATAAAATAAT ACTCAACACAATTTGTTACAGACGCCAATTTTGAGGGACACTCAATTCTG GGTACCGGAGGTATACAACTCCATCATCCAGCCCTCGTCCGCTGCTCCCA TTCGCAAAACGAGTCGATTGCAATCGACACTGGATCGAGAAATTTATTCG AAAGCGCACGACACCTCTTACCTTCAAGCAGCTCAGCCTGAGGTTTGTAA CATGATTTTTTCACTGGATAGTTCTATTGAAAAATTAgcataaaattctg aaaaacttgaggaagcttttaaaattttaaataaagcaGTAATTTACTAG TCACAcacagcaaattttttttttaaatcaccatGATACTTTTGGTGAAT TTACCAGATTTCATTTTCACTCCTGTTTACTTAGGTTAAATTTCTGATAC CTTTGCAGGGGAGAATTTGCATGGTCAGGTTTTTCACTTTCACTTGGATT GGTAAGATAATCTGGAtctaaaaaaaaagtatatcGAAAAAAGAGATAGT GTCCTGCAATAACCTTTCCCCTTTTACAAGGTTTTTGACGGTAAAAACGA GAAACGACCTTCGACAATCTCCATGATGCGACGTAACACGTCATCGCTGA AACGTGGTGATATCGCGCGACGGTTAGCCAGTGAACAAGGCAGTCGTGGC ATGCTTAACTTCTCAATACAATATAAACAAGCAACGTACGTATTTTGACT TACCCATTTCTGTGCTATGTGACTTTTtgggcataccggataagtgggat gggggaacctaagtgggaacctaaatgaacaccggaaaagtgggatatCC ATTTCTGTGCTATGtgacttgttttgtttttgtaccATGCTAAATACAGT ctctttttacattttttatatcttatgtccctttaagccaCCCAACTCGC CTTTCTTTCAAATCAATTGATCAATTTTGAGTGACTCGGATTTTGAACTC GTTGATTTTGACGGTTCGTCAAACTTTCAAGAATCTTTCTTGATGAATTA CTTAATTCTAGCCTTGTTTAGCCTTGTTAAACGAATAtgaagttgatttt gtttttcatttttctttttagcgcCAAACTAACAATCATCATATTGAAAG CCGAAGGATTGCCGGTTCGAAAAGACGGTGAGTTTTGTGATCCGTTTGTT GACATTCAAGTCAGTCCGTACTACAAGCGTCGAATGCATTCAGAAGTTca tcaaaaaactcaaaaccCTGTCTTCAACCAATCGTTTGATTCGGAGGTGC CGCCATACGAGGTCCGTGGTCAAACGATACATTTCACCGTGTTAGATTTT AGTCAGCAGTTAGCCCACGAACCGATTGGCTCAGTGGCTTTTAAGATGGA CAGTTTGGACAGGGATGCTTTCAACGCGGGCAAAGAATTCACACTGTGGA AGAAAATTGATAAGGTAATGTAACTCAATTATaagtcaaaaacttttact GGAAGAATGTCAGGGTTTTTAAGTTACCCGGCCTGCTAAAAAGCTCTTTT TCGGATGACGAAATATCGGGGTATTTTTTTTGACATGACCTCTCTCAAAA TTTGATCACTTTCTCGAAATGGTAGACATTTGATTTCAATATATCAGCAT CCAATATAATGTTGAAATGAGTAAAAACATTACAGTGAGAGATATTACTG AAGTCTTAAAATTGATCAGGAAGTTGGATAAGACTCAACAGCCTATATTA TCTATGCCAATATTTATGGCGAATAATAATGAACTCCAAAAGTTTATTTT AAATTCACATTAAACACAATGGAATACTTTTCTCCTTAATAATAGGATGC TTTGGAATCAGGTGATCGACTAGACGGTAAACGCGAATACCCAATGGAAA TGGAGCTAGACAGGACAGCCATGTTGTTACTGCTCAGTGTCAATTATTTG AAAATCGCCGAACGATTGACGGTGACGGTGAATAAAGCACGCAATCTACT ACTGGTCGACCGCAAAGGCAAATTAGGTATGGAATTTCAACTTTCTATCG GGAGAGTGCATTCGGACTCGTGAAAAGATCCTGACTTTTGGTTTAAAGGA GCGGTGCTTAAGAAATGGTAGACATCGTTTACAAAGGTCAAAAACTAGAA GAAGGGAGGGAGTTATGCATGTATGGCATGAAAACTAACAATCGTTTTAA TCGTTCACTtcctttcttttcattttctcttccgGGGGCGGGTCAATGTA CAATATAACAGGGTGCTCCATGTAATttcgttttgtttttctttttgttt tttaattctgttttagtttttgagtaaCGTCTTAAAAGTcaaatcaagta tcaaataattAAAAGCTTCTCTTTGGAAAGCATCTAGTCGTCGTCAAAAT GAAACGATTGTTGCAAACATACCTTTGTATTGTACACTCCGCCGTCCCGC GTAAATAGTCTTAAAAATCAACTTGTTATTTCTAACCCGCTTTCACTTGT CCATGCATGCATTTTCACTCATATCGGCTTCTCTTTACTTTCcttataat ttcattttctagCACGCCGATACACTATAATCTAACGTTATCATTATTGC ATTACATTTTCATTCGTTCATATTAATGACAATACCATTATCTCGATTCA TCGAATGGTTTGCGGTGAACAACTCACGTGTGCGTTTGGGGCTGATTTGA ATCCGGGTTTAgcgtttgaaaaatgatttataAGTGTAATTGGCAAGGGC ATTTAGACATTTTAGATACAGTCCTTTCTGAAATTATAATAATCATTTGC CAGATATAACGTTAACCCCAATTAGGATGTTTCAATTTCTTTCCCGTAAA TCTTCAACTGTTTTGACTGTTAACGCGATTCGTTCAAAATCAACCACCAA TGCGCACATCGAGTTCACCATCAACCAAACCAGCCAACTTACTAACCTTA GGGGAATAATCAGATGGTTGTTTAACATTTCTTGACTCGTAGAATCTTTG TATGATCCTGAACAAAACATCCAAATCGTTTGCCGAACTATTTTTCTAAG TCGGAAAATagatacagtggagtctccataactcgaacgctcaatttaat ttaattttcggaaatttaaaaataaagattggtctataaggcattgttaa ctgaagggatcatgaaacttgttcgagttaagaaggcattcgagttatag aggttcgagttgaaGGGATTCCACTGTACTAGCAAAAAGATGAGCGATTT TGAAGTTTTCTCAGAACCATAAAAGGTTTTAACTgttcaaaaatctcaaa ccatctgattatcccttttaaacttcttttctcttcttttactAACCAGA TGGCATGTCATGCATAATCCCTCCTATTAGGACTCCTATTTCGAAACGGA AAAAATCCCGCAAAAacgggaaaatcggggaaattgaACACGAAGATCTT GAAAATAATAATGAGAATGGGAAACGAAGTGTACTGGGTAAGTGAAGCTG TAGTGGTAAGATTGGAAAGAAGTGTGTTTTCACTGATAATAAGAGTGATT CGGTAAGAGACGAAATGATGAATCTTCTTGCACTCGTTCGTTCGAATCAA CACTTCTCAAAATACCTCATCATTCGAGTTTTTCTGTAATTTGTACAAAC AGTATTTCGTGTAAGAGCCCCTGTACGCACTGCTATGTTACAAAAGAATC GCCGGTGCGGATTTGTACATGCTACTACTGTCTACTGTATTTGAGAAAGA GAGAAATAAAGAGGGCCTAACATTTCAAGTGTTTCGGAACCCCGCATGAG GGAACTGAATCAAGCAACAATGTTTTTGCCATTTGCTGCAATCTTACAGC GTTTTTCAGCCTCAATTCGTTTAAAGTTCATAAATTGTCGAATGACCACT CTAACTCTAAGTGAAAATGCATTTCTTTCTGAGTCTAAGAATTGTCCATT ACCAGCTTTGTAAGGATCTTCTCTTTACAATGTAAAGGAAGACTAAAACA CAAACTGTAGACGATTTTAAGGCTCTATCTGCACTAAGCATCGTGCACAA TTTATCAATTAATATGGCTTCAAATTGGCTACACTTCACAGTTCATATAA CTTTAAGGGGAGAAACTTGCGCTGAAAGAAACGTTCGCGTATTTTTGCAA AAGTGTATCTTCCCTTATAGTATTTAACGTGATCAAACGCTGGTATTAGT CTGCTTTCTCGATACGCGAATGTCAACAAtctttcttctcttgctttttc ttttttcacgaTCCCAGATTTTTACAGGTATTTCTAAATATAAAAATGAC GCAATCTTGACTTTCATATCGTGCATCATAAAtactttcccagctggcac acaacatcgcttcaacgttcatctaacgttcttTGGACGTTTTGACCGTT GTCTTGATGTTTTGTACCAGTGGGGATTAGAATCATGCAAATTCAgattt aattttgattcttatCTATTTCAGATCATCCGTACGTCCAAGTTACTCTA AAGCATTTCGGACGCGTGCTCAAAAAATTACGGACAGGCGTGGTGAAACA CGAAACGAATCCTGTATTTAATAAGACTTTATTATTCGATGTTCCAAAGC ACCTTGTAGACTCTGTATCACTGACAGTAAAATTACGTCATCATAACGAA CTTGGGCGTGACCGGACTTTTGCTATTTTAACGGTGGGTAAAAATGCGGT GGGGTCCGGTTCGGAGCAATGGACGGATATGTTGAATTCATCGGAGACCG TACAACGCTGGCACCGTTTGATACCTATTGAACCGGTTGATGATTAAAAT A

Coding sequence (CDS) from alignment at scaffold_435:123574..129024+

>TCONS_00065256 ID=TCONS_00065256|Name=TCONS_00065256|organism=Clytia hemisphaerica|type=CDS|length=1569bp|location=Sequence derived from alignment at scaffold_435:123574..129024+ (Clytia hemisphaerica)
GGAAAAGCTTCCAAAACAACTTCAAAGATGGTTGCAACGAAGACCTTACC
TCTGGTGCTGGGGTCCCTCTTGGGAATCATGCTGGCCATTCTGGTGGTCG
TTTTGTTCTTGTTCTACAAAAAGCGAAAGGAGAGCATCGAATTCAGCATA
CCGTTGGAGAAGATGACCAGAGGGCTGAAAAGCTCTTTGAAAAGGAGATC
AACTTCGTCGAAGAACAGCAAAAGTAGTAACGACAGTATACACATCAAAC
CACAAGGAACGCCAATTTTGAGGGACACTCAATTCTGGGTACCGGAGGTA
TACAACTCCATCATCCAGCCCTCGTCCGCTGCTCCCATTCGCAAAACGAG
TCGATTGCAATCGACACTGGATCGAGAAATTTATTCGAAAGCGCACGACA
CCTCTTACCTTCAAGCAGCTCAGCCTGAGGTTTTTGACGGTAAAAACGAG
AAACGACCTTCGACAATCTCCATGATGCGACGTAACACGTCATCGCTGAA
ACGTGGTGATATCGCGCGACGGTTAGCCAGTGAACAAGGCAGTCGTGGCA
TGCTTAACTTCTCAATACAATATAAACAAGCAACcgcCAAACTAACAATC
ATCATATTGAAAGCCGAAGGATTGCCGGTTCGAAAAGACGGTGAGTTTTG
TGATCCGTTTGTTGACATTCAAGTCAGTCCGTACTACAAGCGTCGAATGC
ATTCAGAAGTTcatcaaaaaactcaaaaccCTGTCTTCAACCAATCGTTT
GATTCGGAGGTGCCGCCATACGAGGTCCGTGGTCAAACGATACATTTCAC
CGTGTTAGATTTTAGTCAGCAGTTAGCCCACGAACCGATTGGCTCAGTGG
CTTTTAAGATGGACAGTTTGGACAGGGATGCTTTCAACGCGGGCAAAGAA
TTCACACTGTGGAAGAAAATTGATAAGGATGCTTTGGAATCAGGTGATCG
ACTAGACGGTAAACGCGAATACCCAATGGAAATGGAGCTAGACAGGACAG
CCATGTTGTTACTGCTCAGTGTCAATTATTTGAAAATCGCCGAACGATTG
ACGGTGACGGTGAATAAAGCACGCAATCTACTACTGGTCGACCGCAAAGG
CAAATTAGATGGCATGTCATGCATAATCCCTCCTATTAGGACTCCTATTT
CGAAACGGAAAAAATCCCGCAAAAacgggaaaatcggggaaattgaACAC
GAAGATCTTGAAAATAATAATGAGAATGGGAAACGAAGTGTACTGGATCA
TCCGTACGTCCAAGTTACTCTAAAGCATTTCGGACGCGTGCTCAAAAAAT
TACGGACAGGCGTGGTGAAACACGAAACGAATCCTGTATTTAATAAGACT
TTATTATTCGATGTTCCAAAGCACCTTGTAGACTCTGTATCACTGACAGT
AAAATTACGTCATCATAACGAACTTGGGCGTGACCGGACTTTTGCTATTT
TAACGGTGGGTAAAAATGCGGTGGGGTCCGGTTCGGAGCAATGGACGGAT
ATGTTGAATTCATCGGAGACCGTACAACGCTGGCACCGTTTGATACCTAT
TGAACCGGTTGATGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040916XLOC_040916Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065256-exon-scaffold_435-1491911889:123574..123602TCONS_00065256-exon-scaffold_435-1491911889:123574..123602Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1510915933:123574..123602TCONS_00065256-exon-scaffold_435-1510915933:123574..123602Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1575043694:123574..123602TCONS_00065256-exon-scaffold_435-1575043694:123574..123602Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1491911889:123735..123965TCONS_00065256-exon-scaffold_435-1491911889:123735..123965Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1510915933:123735..123965TCONS_00065256-exon-scaffold_435-1510915933:123735..123965Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1575043694:123735..123965TCONS_00065256-exon-scaffold_435-1575043694:123735..123965Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1491911889:124295..124465TCONS_00065256-exon-scaffold_435-1491911889:124295..124465Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1510915933:124295..124465TCONS_00065256-exon-scaffold_435-1510915933:124295..124465Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1575043694:124295..124465TCONS_00065256-exon-scaffold_435-1575043694:124295..124465Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1491911889:124804..124958TCONS_00065256-exon-scaffold_435-1491911889:124804..124958Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1510915933:124804..124958TCONS_00065256-exon-scaffold_435-1510915933:124804..124958Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1575043694:124804..124958TCONS_00065256-exon-scaffold_435-1575043694:124804..124958Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1491911889:125345..125687TCONS_00065256-exon-scaffold_435-1491911889:125345..125687Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1510915933:125345..125687TCONS_00065256-exon-scaffold_435-1510915933:125345..125687Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1575043694:125345..125687TCONS_00065256-exon-scaffold_435-1575043694:125345..125687Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1491911889:126069..126249TCONS_00065256-exon-scaffold_435-1491911889:126069..126249Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1510915933:126069..126249TCONS_00065256-exon-scaffold_435-1510915933:126069..126249Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1575043694:126069..126249TCONS_00065256-exon-scaffold_435-1575043694:126069..126249Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1491911889:127573..127710TCONS_00065256-exon-scaffold_435-1491911889:127573..127710Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1510915933:127573..127710TCONS_00065256-exon-scaffold_435-1510915933:127573..127710Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1575043694:127573..127710TCONS_00065256-exon-scaffold_435-1575043694:127573..127710Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1491911889:128698..129024TCONS_00065256-exon-scaffold_435-1491911889:128698..129024Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1510915933:128698..129024TCONS_00065256-exon-scaffold_435-1510915933:128698..129024Clytia hemisphaericaexon
TCONS_00065256-exon-scaffold_435-1575043694:128698..129024TCONS_00065256-exon-scaffold_435-1575043694:128698..129024Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065256-proteinTCONS_00065256-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_435supercontigscaffold_435:123574..129024 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21156 0.325273 0.713011 0.516256 13.025 7.30015 6.50457 6.80673 2.43765 4.95626 1.02421 1.79972 9.53505 6.55219 3.2209 3.31871 16.2793 16.6874 13.5301 15.8745 16.825 13.6993 7.84466 10.3234 12.344 12.8871 9.87389 5.46934 1.09518 2.44029
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
Blast
BLAST of TCONS_00065256 vs. Swiss-Prot (Human)
Match: SYT3 (Synaptotagmin-3 OS=Homo sapiens GN=SYT3 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.131e-35
Identity = 98/335 (29.25%), Postives = 156/335 (46.57%), Query Frame = 3
Query:  549 GMLNFSIQYKQATAKLTIIILKAEGLPVRKDGEFCDPFVDIQVSPYYKRRMHSEVHQKTQNPVFNQSFDSEVPPYEVRGQTIHFTVLDFSQQLAHEPIGSVAFKMDSLDRDAFNAGKEFTLWKKIDKDALESGDRLDGKREYPMEMELDRTAMLLLLSVNYLKIAERLTVTVNKARNLLLVDRKGKLDGMSCIIPPIRTPISKRKKSRKNGKIGEIEHEDLENNNENGKRSVLDHPYVQVTLKHFGRVLKKLRTGVVKHETNPVFNKTLLFDVPKHLVDSVSLTVKLRHHNELGRDRTFAILTVGKNAVGS-GSEQWTDML-NSSETVQRWHRLI 1547
            G ++F+++Y   + +L + IL+A  LP +    F DP+V I + P  K++  ++VH+KT NPVFN++F   VP  E+  + +HF+V DF +   H+ IG V   +D+L   A     +  LW+ I +   E  D  +                 L  S+ YL  A RLTVT+ KA NL  +D  G  D                                               PYV+ +L   GR LKK +T + K+  NP +N+ L+FDV    V++V L++ +  ++ +G +    +  VG +A    G E W +ML N  + V+ WH+L+
Sbjct:  301 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPVFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVV--LDNLLELA-EQPPDRPLWRDIVEGGSEKADLGE-----------------LNFSLCYLPTAGRLTVTIIKASNLKAMDLTGFSD-----------------------------------------------PYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPDAADPHGREHWAEMLANPRKPVEHWHQLV 568          
The following BLAST results are available for this feature:
BLAST of TCONS_00065256 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYT32.131e-3529.25Synaptotagmin-3 OS=Homo sapiens GN=SYT3 PE=2 SV=1[more]
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