TCONS_00065291 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065291
Unique NameTCONS_00065291
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1194

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065291 ID=TCONS_00065291|Name=TCONS_00065291|organism=Clytia hemisphaerica|type=transcript|length=1194bp
TGACCACATTCTTATTTGACGACTTGCTAATTATTTTAGCatcaattttt
atcaacttAGATGGTTTTGTATACCAATAACGCGCCAAATTGGGCATTTT
TCAttggttttgttttatttttctcgAACACTGTCTATGGTACTGAAATC
GATTTTGTAAGCGAGCCTGCAGCCGTTTCATATTTCGAGTGTGGATCAGA
GGCTACTATCCAATGGCAATATGATGCTTCCCACAATGCTTTGAGTAGCA
TCAAATGGTATGAAGCGGATGCCAATGGCAATCTAGTGGATGAGATTGCA
AATTATGGAAACAATACTTTCCTACTCAATGAAGGATCACAGTTTACACC
TGCGAAGGAAACAAGGGTATCGTTTTCTCCAAATGCTGGTCTGAAGATTG
CCTCCTTTGCACCTTCCGATGAAGCCATTATCAAGATCGATGTTGTTTAT
GACAATATCGATCACGCCACTGGTCAAACTGAAATCAAAAACCAAGTTTC
GGCTGTCGTGAATTTTGAAGCAGCCACAACATACACTTTACTGGGCGGTG
GATCCGCCTCCTTATGGTGTAATGTGACCGCCCTGCCAGCACCTTCCATT
TTATGGTACCACAATGGTACACTCATACAATCTGATGGATATACTTATGA
CATTACAGAAACATCTACAGTTCAATCAGGCTGTGGAGCCACTTTAGTGT
CATCCAGGCTAGATCTGATGACAATAGGCTTGAATAATACTGGAGACGTC
CAATGTGCTTCTTATTACGAGACAACTCAAGTCAATTGGAACAACCAGAC
TACCAATGTTGTCGTGGAATATCCTCCCGGTGCAGTGACCGCTACTGAAG
GAAATTTCTCCTCACCAAGCATCAATCTTGGTGCAACAACAACGCTTTAT
TGTCAAGCTTACGCTAATCCGTCACCTTCGTACCAACTGGTCCGCAACGG
TGTCATCCTTGCTACCCATAATGCAACTGACGGAGAAGTTTCGTTTTCGA
TCGGTCCCGTAGGTTTGTACGATGACGGGATTTATACATGTCGAGTCATA
AACAAACACGGACAAGATGATTTGGATTTAATGCTTAATATCTCAATTGT
CCCGACGTTTTGGTCGTTCGATAATTCCATTAAGATTTACGATGAAGGAG
ACATTATAACTTTAATGTGTGGAATCAAGGCTAGCCCGTTGGAG
Run BLAST on NCBI

protein sequence of TCONS_00065291-protein

>TCONS_00065291-protein ID=TCONS_00065291-protein|Name=TCONS_00065291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
MVLYTNNAPNWAFFIGFVLFFSNTVYGTEIDFVSEPAAVSYFECGSEATI
QWQYDASHNALSSIKWYEADANGNLVDEIANYGNNTFLLNEGSQFTPAKE
TRVSFSPNAGLKIASFAPSDEAIIKIDVVYDNIDHATGQTEIKNQVSAVV
NFEAATTYTLLGGGSASLWCNVTALPAPSILWYHNGTLIQSDGYTYDITE
TSTVQSGCGATLVSSRLDLMTIGLNNTGDVQCASYYETTQVNWNNQTTNV
VVEYPPGAVTATEGNFSSPSINLGATTTLYCQAYANPSPSYQLVRNGVIL
ATHNATDGEVSFSIGPVGLYDDGIYTCRVINKHGQDDLDLMLNISIVPTF
WSFDNSIKIYDEGDIITLMCGIKASPLE
Run BLAST on NCBI

transcript from alignment at scaffold_435:295195..299057-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065291 ID=TCONS_00065291|Name=TCONS_00065291|organism=Clytia hemisphaerica|type=transcript|length=3863bp|location=Sequence derived from alignment at scaffold_435:295195..299057- (Clytia hemisphaerica)
TGACCACATTCTTATTTGACGACTTGCTAATTATTTTAGCATCAATTTTT
ATCAACTTAGATGGTTTTGTATACCAATAACGCGCCAAATTGGGCATTTT
TCATTGGTTTTGTTTTATTTTTCTCGAACAGTGAGTATTCATACATTTCT
CTGATTTTGAGTTAATTTTCCCCTTCTCACAGACCCGGTAGGATTTTTTC
AGCCAGTGGGGATACAAATAATGGACTGAAACTCGAGGGGGATTGATATT
CCAATATTTTTTTATGGCTGGGGATTTAAATTCTTTTGTTTTCAAGTCAG
AAAATCCAGCGGGCATGGGAGAAATAGCACAATATTTTTGCAGTGAGGAT
TGTTTTATTTGATTATTTTCAGTGGGGACAAAAATTGGAGGATTATTTTC
CACCGTGGACGATATATTTTAGGCAATTTTTCCAGTGGGAAGCTCTGGGG
TCCTAGTGGGGCAGTGAAGGGGGTGTTATTTTTTTATCATTTGATAAGAC
ATCTCGCCTTAACCTAATTGCAGCATTGTCTGTATCTTCTCTTTGCATAT
TTTTGATAACTTGTACAAAGTTGCATGTAAGTAAAGAACACGAAATCTAT
TGGAGGATACAAGTAGGTTGCCTAGCCTGAATTAAAGGAGATTCTTTGTT
AGCTTATGTATATATAAAACATTCCCACTTTCATTTAGCTGTCTATGGTA
CTGAAATCGATTTTGTAAGCGAGCCTGCAGCCGTTTCATATTTCGAGTGT
GGATCAGAGGCTACTATCCAATGGCAATATGATGCTTCCCACAATGCTTT
GAGTAGCATCAAATGGTATGAAGCGGATGCCAATGGCAATCTAGTGGATG
AGATTGCAAATTATGGAAACAATACTTTCCTACTCAATGAAGGATCACAG
TTTACACCTGCGAAGGAAACAAGGTGATTTACTTCAGTGCTTGATTTAGT
TTTTTTACATATGTTTTCCTTTCAAGCATTCGCTTTTTTAAGAACTTTGC
CAGACCGCCAATAAACACAGATTGCGCCAGAGAACCCTGATTGCTCTCAA
TCGCCTAGTTATCAACTCGTGTTATTAACCTACAAAATCATGAGATTTAT
TTACCATAGACTGGAGTCGTTTATAATAATATTGTATAGTAATATTGGTG
TTATATGATAACACTTCAATTGTCATGGGATGGCATTAGTTTGCATAAAC
TACAATTTGTCCTTACCATTTCCTTACTATATTTGAATTAGTTTCTAGAA
TGATCAAGGAAAGAAGTCTCCAAAAGTTAGAACTAGTTTGTTATCAGTAA
TCTTGTACCAGGAATCTTTCTATAATCGGGGAGAAACACATCTTAGAATA
CTATCTGTATTTCGAATCTTTATTCGAATTAGATATTCCTATCGAATCAG
TAAAAGTTTACGTTCTCATTTCGGGAGAAGAGCCTCTCGAAACATAACCA
AACAAAACTCTTGATCCAAGCCACGATAAATTTCCAAATAAAGACTATAC
AATTTATTTATTCATTTTCTTTATGTTTCCACAGGGTATCGTTTTCTCCA
AATGCTGGTCTGAAGATTGCCTCCTTTGCACCTTCCGATGAAGCCATTAT
CAAGATCGATGTTGTTTATGACAATATCGATCACGCCACTGGTCAAACTG
AAATCAAAAACCAAGGTAAATATCCGGGGTGAATATCGCCTTTGCGTTTG
ACGGGCGTCTTTCTTATAGGGATTATCAGATGATCTTTGATATTTGGCTT
AGAGATACCTTTTATGGTCCTAAGAAACTCCTCCAAAGTTTTTGACCCAA
CTATTTTCCAAAGCTGAGATATTCGACTTTGAATTTTCAATTTTTTATAT
GAAAACAATAGAAATTCAACGTAAAGACTGTGTAAAGACTCGTTTTTTCA
TTTCATATTGCGTTAGACGGGTATCTTTCTTAACATTGATTTAAAGCGTT
ATATATTAGTTTGAAAATTACTTTTACTAAGAAGTTAAACTATTTCAATG
AACATTCATTAAACATCGTCACTTGTAGCTTTGAAAAAAATCCGCCAGTT
AATCCATCGAAGCTTGGGTCTTTCTGGATGTTTTATAGATTTTTAGTCTT
TCACCGGTGCATGCATACGTTAGAGACGTATTAATATAATTTTATCCAAA
TTGTTGTTTATTATCGCCAATCAAGCTTGTAATAAACACGAACCTTAAAA
ATGTTGTTTTCTCTCTCTCAATTCCAGTTTCGGCTGTCGTGAATTTTGAA
GCAGCCACAACATACACTTTACTGGGCGGTGGATCCGCCTCCTTATGGTG
TAATGTGACCGCCCTGCCAGCACCTTCCATTTTATGGTACCACAATGGTA
CACTCATACAATCTGATGGATATACTTATGACATTACAGGTGAATTTTAC
TGTTTTTCTTAGCTGGAGTATATACATATATCAGTTATAGTTCCTCGAAT
ACGTAATGCGACCTATGTAGAATTCAATCCCTAAAGGAAAATTTAATACT
AAAGTTGGTGTTTCTCCGGTCATGTTTTTATACAACTTTTGAATTCTCTT
ACAGAAACATCTACAGTTCAATCAGGCTGTGGAGCCACTTTAGTGTCATC
CAGGCTAGATCTGATGACAATAGGCTTGAATAATACTGGAGACGTCCAAT
GTGCTTCTTATTACGAGACAACTCAAGTCAATTGGAACAACCAGACTACC
AATGTTGTCGTGGAATGTAAGTATGATACGTTTATAAAACAATTATAAAG
TCGTACCCTTATAAGAACAAAAAGAACACTAGGTAAAAACGTGTTACAGC
TGGTAAAAGACTATCAATCACTAACTCAAATATGGAAAGTCAAAATTAAC
AAAATCTACCTGTACCTGCGTCTTTAGGATCATCTTCTTGATGACATTTG
GCATCATGTTCATTCTCTTTCCCTTGAAGCGCGGTTTTAGAAAATTGATC
TCGCAGCACATTATTTCTTGAATTTTGTCTCATAACAATCTGCAGAGTAA
AATAGAAACCTGTAACTTTAATAGCAGCTTTCGAATTAGGTTTTGGTTTC
GTTCTCATTGAAAAGATTTTTTTAAGAGTGGAATTTTATCAATATTCTCT
AGCTAATAATTACATTTAAATACTTTCCTTCTCAGATCCTCCCGGTGCAG
TGACCGCTACTGAAGGAAATTTCTCCTCACCAAGCATCAATCTTGGTGCA
ACAACAACGCTTTATTGTCAAGCTTACGCTAATCCGTCACCTTCGTACCA
ACTGGTCCGCAACGGTGTCATCCTTGCTACCCATAATGCAACTGACGGAG
AAGTTTCGTTTTCGATCGGTCCCGTAGGTTTGTACGATGACGGGATTTAT
ACATGTCGAGTCATAAACAAACACGGACAAGATGATTTGGATTTAATGCT
TAATATCTCAAGTAAGAGTAAAATTTGATAAAGATATGATAGTAATTTTA
AGACATTTGAACTTTTGCTTCTCTTCATTAAAATCTAAATGAAAGACTGA
ACAATACCAAGAGCTGAAAATTTGGGACAAGTTGGAGTTTTTACAAGCTT
TAATTTGATTTTGTTGGTCGTTAACCTTTAATAAAACAAATTTGTTACTG
AAAGAACGTGTTATCTCTATTACTTCAAATGACCAATAAGCGAAGTATTT
TATAAAAACTCCATCTCATCCCCAAATTTTGAAATAGTTGCAGGTTCATT
CCATTCCCAATTGTTATAATAATCATATTTTTTGTCTTATTGAATTTTCT
CTACTTTCTCTTCAGTTGTCCCGACGTTTTGGTCGTTCGATAATTCCATT
AAGATTTACGATGAAGGAGACATTATAACTTTAATGTGTGGAATCAAGGC
TAGCCCGTTGGAG

Coding sequence (CDS) from alignment at scaffold_435:295195..299057-

>TCONS_00065291 ID=TCONS_00065291|Name=TCONS_00065291|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_435:295195..299057- (Clytia hemisphaerica)
ATGGTTTTGTATACCAATAACGCGCCAAATTGGGCATTTTTCATTGGTTT
TGTTTTATTTTTCTCGAACACTGTCTATGGTACTGAAATCGATTTTGTAA
GCGAGCCTGCAGCCGTTTCATATTTCGAGTGTGGATCAGAGGCTACTATC
CAATGGCAATATGATGCTTCCCACAATGCTTTGAGTAGCATCAAATGGTA
TGAAGCGGATGCCAATGGCAATCTAGTGGATGAGATTGCAAATTATGGAA
ACAATACTTTCCTACTCAATGAAGGATCACAGTTTACACCTGCGAAGGAA
ACAAGGGTATCGTTTTCTCCAAATGCTGGTCTGAAGATTGCCTCCTTTGC
ACCTTCCGATGAAGCCATTATCAAGATCGATGTTGTTTATGACAATATCG
ATCACGCCACTGGTCAAACTGAAATCAAAAACCAAGTTTCGGCTGTCGTG
AATTTTGAAGCAGCCACAACATACACTTTACTGGGCGGTGGATCCGCCTC
CTTATGGTGTAATGTGACCGCCCTGCCAGCACCTTCCATTTTATGGTACC
ACAATGGTACACTCATACAATCTGATGGATATACTTATGACATTACAGAA
ACATCTACAGTTCAATCAGGCTGTGGAGCCACTTTAGTGTCATCCAGGCT
AGATCTGATGACAATAGGCTTGAATAATACTGGAGACGTCCAATGTGCTT
CTTATTACGAGACAACTCAAGTCAATTGGAACAACCAGACTACCAATGTT
GTCGTGGAATATCCTCCCGGTGCAGTGACCGCTACTGAAGGAAATTTCTC
CTCACCAAGCATCAATCTTGGTGCAACAACAACGCTTTATTGTCAAGCTT
ACGCTAATCCGTCACCTTCGTACCAACTGGTCCGCAACGGTGTCATCCTT
GCTACCCATAATGCAACTGACGGAGAAGTTTCGTTTTCGATCGGTCCCGT
AGGTTTGTACGATGACGGGATTTATACATGTCGAGTCATAAACAAACACG
GACAAGATGATTTGGATTTAATGCTTAATATCTCAATTGTCCCGACGTTT
TGGTCGTTCGATAATTCCATTAAGATTTACGATGAAGGAGACATTATAAC
TTTAATGTGTGGAATCAAGGCTAGCCCGTTGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040934XLOC_040934Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065291-exon-scaffold_435-1575043694:298928..299057TCONS_00065291-exon-scaffold_435-1575043694:298928..299057Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1575043694:298135..298369TCONS_00065291-exon-scaffold_435-1575043694:298135..298369Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1575043694:297393..297523TCONS_00065291-exon-scaffold_435-1575043694:297393..297523Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1575043694:296669..296830TCONS_00065291-exon-scaffold_435-1575043694:296669..296830Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1575043694:296342..296503TCONS_00065291-exon-scaffold_435-1575043694:296342..296503Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1575043694:295647..295922TCONS_00065291-exon-scaffold_435-1575043694:295647..295922Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1575043694:295195..295292TCONS_00065291-exon-scaffold_435-1575043694:295195..295292Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1510915933:298928..299057TCONS_00065291-exon-scaffold_435-1510915933:298928..299057Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1510915933:298135..298369TCONS_00065291-exon-scaffold_435-1510915933:298135..298369Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1510915933:297393..297523TCONS_00065291-exon-scaffold_435-1510915933:297393..297523Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1510915933:296669..296830TCONS_00065291-exon-scaffold_435-1510915933:296669..296830Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1510915933:296342..296503TCONS_00065291-exon-scaffold_435-1510915933:296342..296503Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1510915933:295647..295922TCONS_00065291-exon-scaffold_435-1510915933:295647..295922Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1510915933:295195..295292TCONS_00065291-exon-scaffold_435-1510915933:295195..295292Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1491911889:298928..299057TCONS_00065291-exon-scaffold_435-1491911889:298928..299057Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1491911889:298135..298369TCONS_00065291-exon-scaffold_435-1491911889:298135..298369Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1491911889:297393..297523TCONS_00065291-exon-scaffold_435-1491911889:297393..297523Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1491911889:296669..296830TCONS_00065291-exon-scaffold_435-1491911889:296669..296830Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1491911889:296342..296503TCONS_00065291-exon-scaffold_435-1491911889:296342..296503Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1491911889:295647..295922TCONS_00065291-exon-scaffold_435-1491911889:295647..295922Clytia hemisphaericaexon
TCONS_00065291-exon-scaffold_435-1491911889:295195..295292TCONS_00065291-exon-scaffold_435-1491911889:295195..295292Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065291-proteinTCONS_00065291-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_435supercontigscaffold_435:295195..299057 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.072036	0.0351232	0.0815629	0	0	0.0383825	0	0.0433519	0.698089	0.300764	0.218946	0.479756	6.9947	8.4084	0.961254	1.58028	0.18927	0.692842	6.70039	13.0213	2.64664	2.03833	0.412975	0.788455	2.08823	2.38139	0.148164	0.052708	0.0399772	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003599Ig_sub
IPR003598Ig_sub2
IPR007110Ig-like_dom
IPR013783Ig-like_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065291 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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