TCONS_00065301 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065301
Unique NameTCONS_00065301
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2862

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065301 ID=TCONS_00065301|Name=TCONS_00065301|organism=Clytia hemisphaerica|type=transcript|length=2862bp
tcgttttgacACACCGCCATTATGGTTTATTCCATGTGCATGTGCTTAAC
TAAGTGTAAACAACCACTGACTCcaggaaataaaaaataaaaagctgaAC
TGAAAGTAAATATCATGGATCTCTTTAGGATCGAAAGATTTGGGGCTGAG
TGTTTGGATGAGGAAGATGTGAAAGCAAAGGAGATGCATCTTCATAAGTT
GATTGAGCAGCgaagaaaaaaacgaaagtCAAATATCTCTGAAGAAGATG
AaacaaaaacactcaaaaagaaaaagaaaaagaaacttgCTGACGATACT
GAAGAATGCAAACAAGAGATTgttgtgaaagaaaaaaagttgaaaaagaa
gaagaaaaaacaaagtGATGACGAAGAGGATGAATCAGAGGTCGAAAAAC
AAAagctggaaaagaaaaagaaaagcaaaaccaAAGTTGACAAGAGTATT
GAAAATGCACTTGAGAATAGTGAAGATGAATCTAGTATTTTGAGAGAAGA
TTCGACTGATAAGAGATCAAAAAAGAAAGAGAACAGCCTTGAAGGAGTTG
AAATAGAAGAAATTAATGAACAAATTGAagaggaaaatgaagaaaaacat
aACAATGATGACTTACAACAAGAACCAGAAAAAGAACACTCATTTCCCAT
ACTTGGGAAACAAGTACACAGATCTAAAGGACCGGTTAAAAGGAATTTAC
CACGTTGGCTTGCAGAACCTAAAATCATAAGTTCACGAACTGATACACAT
AATGAACACAAAATTGAAGAACTTGACTTTCTGTCATGTAACACTATTAA
AAATCTTGAGAGAATGGGCGTAAAACATCTTTTCCCCGTGCAATCACATG
TGGTACCTACTGTCATGGACATGTTTAAAAATAAGAAACCATGTTTCCCA
TGCAGAGATATTTGCGTTCAAAGTCCAACGGGAAGTGGGAAAACGCTTAG
TTATGTTATGCCAGTTATTGAAGCAATGTCTAAAAACATTATTCGAGATT
TACAATGTTTGGTTGTTCTCCCTACAAAAGATTTGGCAGCCCAAGTGAAG
GTGACTTTTGATCAATGTGTTGTTGGGACTAATTTGAAAGTTGGCCTTGT
TGCTGGTGTGAAATCATTTGCTAAAGAACAAGAAAGTATCATTACTGCAA
GACCAACAGGTTTTCACACTTTGATCGACATCCTGGTATGTTCTCCAGGT
CGGCTTGTGGATCATTTGAAGTTGACACCTGGTTTCAGCTTGGCTCACCT
AAAGTATATGGTCATTGATGAGGCTGATCGACTGCTTTCTGATAGTTATG
CAAACTGGCTGGCTCTTTCAATGAAATCTGTACAAGCTGAttcCAGCCAC
AAGATATTTCCATTGACACCAGCCAAATTCAGTAAACCATTTCAACACGT
TCAAAAATTCTTGTTTTCTGCTACATTGACGGAAAATCCTGAAAAGATTG
CAACATTGGAATTATTTAACCCTATACTGTTCCTTTCGCAATCTTCTCGA
AAGAAAAAGGATGATGACCAGGATGTAGAAGGGGAAGAACAACCACCCGA
GGACCAAGAAGTGAATTTGAAGACGTATGTGGTACCTGATCAACTGAAGG
AACGAATGATGGTCGTTGAAGCTCACCAGAAACCGTTAGCGTTACTTTAC
CTCATGAAGAACGAAGATCATCAATGTGCACTGTGCTTCACTAACTCCAT
TGAATCTACTCATAGGTTGTTTTTATTGCTTCAACGTTTCAAGGATATCA
AAGTTGCGGAATTTTCATCGAAGCTGAATGAAACTCAACGCAAAGGCATC
TTACGAGATTTTCGTCAACAAAAAGTGAATTTGTTGATCGCTACCGATTC
CATGTCACGTGGTATGGACATTCGAAATGTCGACCTAGTTGTCAACTACG
ACGCACCAAACAATGCCAAAACATATGTACACCGAGTTGGCCGGACAGCC
AGAGGAGGAGAAGAAGGTGAGGCAGTAACGATATTACAAGGAAAGGAGGT
GTttcatttcaagaaaatgcatcaATCGTTAGACACTGCGCGTCCCATAA
AGAAAATTCGAATCAACGAACAGGCTTTCGAGGAATTTGAAGACGATTAC
GAACTAGCGTTACGAGATTTGAAAACCAAAGTACAAAgcgagaaaaagaa
aatctaatatgaaatgatgattttgttgACGTTATGTGCCGGCTGAGTGG
TCTAATTTGTCTTCGTTTCTTTGTTGTTTCGTGAAgatttgcttttattt
ttatatatttttgacaAATAAGAGCTTAAAggggaactaaacattttttg
aggTCATGCTTTTTTTGTATCTAAGTACTAGACGATATAGTATAACTTCA
AAAAATATGACTTCCATTCTCAATCTCTTTCGTTGCtttataaaaagatt
ttctgtaaacaaaaaacagttttttcagaCGTCATTCCTTGTAAGTATTA
GATGGGGCCCCGTCTACTCACGATTTTTTCTGAACTCGATAGTAGACGGG
TAGTTTTGGACAAATATTTCTACAATTTCTTGTAGAAACGCTTCTGATTG
GCCGATTATGTCTATTGTTCTCCTGaaaaatttatgcaacaaaattcTGA
TGGGCCAGTTTtcaaacggtttttttctggtggcaaattcaaaatctcca
atTCTACCATACTAATTTTTATCTCATGTGAGCTTTGTGAAATGGAGTAA
AAATTAGTAGGGGTCCAGACTATGTAAGTATGTGATGTGATTTaggtatt
tttttgaaatattaaaaaaaatttctcctttAAGAAATAATATAGTTTTG
TATCATCTTAATATCTAGTATATCTATATGatatgaaatataattttgtc
ATGTTTGACCAA
Run BLAST on NCBI

protein sequence of TCONS_00065301-protein

>TCONS_00065301-protein ID=TCONS_00065301-protein|Name=TCONS_00065301-protein|organism=Clytia hemisphaerica|type=polypeptide|length=680bp
MDLFRIERFGAECLDEEDVKAKEMHLHKLIEQRRKKRKSNISEEDETKTL
KKKKKKKLADDTEECKQEIVVKEKKLKKKKKKQSDDEEDESEVEKQKLEK
KKKSKTKVDKSIENALENSEDESSILREDSTDKRSKKKENSLEGVEIEEI
NEQIEEENEEKHNNDDLQQEPEKEHSFPILGKQVHRSKGPVKRNLPRWLA
EPKIISSRTDTHNEHKIEELDFLSCNTIKNLERMGVKHLFPVQSHVVPTV
MDMFKNKKPCFPCRDICVQSPTGSGKTLSYVMPVIEAMSKNIIRDLQCLV
VLPTKDLAAQVKVTFDQCVVGTNLKVGLVAGVKSFAKEQESIITARPTGF
HTLIDILVCSPGRLVDHLKLTPGFSLAHLKYMVIDEADRLLSDSYANWLA
LSMKSVQADSSHKIFPLTPAKFSKPFQHVQKFLFSATLTENPEKIATLEL
FNPILFLSQSSRKKKDDDQDVEGEEQPPEDQEVNLKTYVVPDQLKERMMV
VEAHQKPLALLYLMKNEDHQCALCFTNSIESTHRLFLLLQRFKDIKVAEF
SSKLNETQRKGILRDFRQQKVNLLIATDSMSRGMDIRNVDLVVNYDAPNN
AKTYVHRVGRTARGGEEGEAVTILQGKEVFHFKKMHQSLDTARPIKKIRI
NEQAFEEFEDDYELALRDLKTKVQSEKKKI
Run BLAST on NCBI

transcript from alignment at scaffold_435:425442..437517-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065301 ID=TCONS_00065301|Name=TCONS_00065301|organism=Clytia hemisphaerica|type=transcript|length=12076bp|location=Sequence derived from alignment at scaffold_435:425442..437517- (Clytia hemisphaerica)
TCGTTTTGACACACCGCCATTATGGTTTATTCCATGTGCATGTGCTTAAC TAAGTGTAAACAACCACTGACTCCAGGAAATAAAAAATAAAAAGCTGAAC TGAAAGTAAATATCATGGATCTCTTTAGGATCGAAAGATTTGGGGCTGAG TGTTTGGATGTAAGTTTATTTTATTTTATTTGTTTTTCAGGGCTATTGAT ATTGTCTTGGCACTTGGGGAGGCCATTCCAGAATTTGTCTGTATAACGGT GCTGACTCCTTTGTACGGGTGAAAGCAGATTTTTTGTTATTTAATCTGTA CAGGTGAAAATCATTTATATCGGTTAGGGTCAGGATCAGTTAGGGTCAGG ATCAGTTAGGGTCAGGATCAGTTAGGGTCAGGATCAGTACGACGACGGTA AGTTGGTCTAATATCGACATCCCTCGTCTAATACACCGTTTAACAGTCTT GCCATCTCCACCGTAGAGGCGGTAGGTAAAAATGCTCACTTTAGTACTGT GGAAGGTTAGAGAAATGTAAACATTGTCATTTTTTTCCTTTTCTTTAAAG AGAATGTTTTAGATGTTTGAACATGATCACTGCTGTTATGGTGTCCATTC CAGCCAAGCCATATTTTATCATTCTACAGAAATCCCCGCTTGAAAAATCA AAACATTGATACGTGGTCGAGTTTACTATAAACTTTGCCGAATTAAAACA CGGAAAAATATCATANACGCGAAAATATCATATGACATATGACCACGGCT TCCGTTTAGTTCGATCATGATTCTGATCGCGTGATATAGCTTGATGTTTT GACTTTTTTAAACCAATGAAATCATTTGTTTATACCGCACTAAAGGCCTT TCTAGATTACCGCTCAAAAAAAAACGGGGGTCAACATGAACTTTAAAGCC TGCTGCGGGAAAGGGAAATGGTTTTGAAGAACCAAACATATACAGAAAGG TTTTAATATTATCCAAATATCAGTATAGACCTAACTCTTCATACAAAAAT TACGGGAAACGCATATTTGGACTTTGTACCCTATGCTGCACTCAAGCACT TGAGCCAAAATCCCGCAAAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNTGGTCTAGCGGTAGTGTATGGAGCTTCTGAACCGAAAGT ACTTTTCATGTGCGAGTTTGAATCCCACCCGGAACTCAACTTTGGAAAAT TTCAAAATTTCAAAGTTGAACTCTGAAATTGACTAAGTCCAACTTACAAA CATCCTAAAGGTTCAGAAACTCCAGAAAACTTCAGATCAAAGACAGAGAA ATACAAGATCTACTCTCACCCGTTCAAAGAAGCCACGACCGTCTGTAACA GGGGGCGGACGACACAGGATTTTTGAGGGCAAAAGTTTTCACCAAAATTC AGAATTTCCAAGGCGAGAGAAGAAAATGTATGAATTTCCAAGCCAATTGA ANAGATTTTTTGTTTTTGTCAGTGCTCGCTCGGCAGCCATTTTGAATTTT TCTTTTTCGACGTCTGTACTCGGCAATTTCGTGACCTCTACAGAATCGAC AATTTTGCCTGAGGGGAACAGCAGTGTGATATTAATGACAATTTTATGTA TCTCTCCTGAAAATTTCACAAAAATTCATCTAGAGGAAAAGAAGTTATGA TTAAACTGGATTAAAAGGAATTCTTTACCTACCATTNCTGTGACCGGTAA TTACTCGTCATTTTTAAGCTATAATATATGTGTTTTTTTTCCCGTGAAAT TTTGATCGTTTCATTATTAGTGCTTACTGATTGAGTAATCACCGGCCAAC TTGAAATTCCTTATTTGCAGCACTGGATTGAATTAAAAACAGTAAAAAAG AGTGAAATTTCCGACACAATTTGCGAAAGTACACAGATTTTCATCGGAAT TTCCGACCACCACTGGAAAAAAAATTATTTCCAAGGCTAGAAAAAAATTT AAAAAATGTATTTTTTGGTATTGACCAACTTTTTTCACTAATCTTCCCTG GAAATCTGGGGTAGAACCCCTTGGAAGTTTAGTGAAAAGGGGTTGGAAAA ACAACTCTTGATGTCATCTTATTGAGGAGAGAACCCTGAAAACCTTTAAT TGACCCCTTTGAAAATCTGAAAATCTGAAAAATGAACAATAACTCCTTGG AAAATCTGAGATTTAACTCCCTGGAAAGGTTTGTCAATACCCCTATGGTT TAAAAATGGNTTACCATTTTTTACCGGGGAGAGTGAAGTTTCCCGTGGTT GCCAAAATCAAAACAATAGAAAATTGTTCATATGCGTGCGCAGTCGACAC TGTTAAACGGTGTATTCCGACTACCGACACCCTTCTTTAGAGAAAGGAAT AATATGAAAGCTTGAATCACTGATTGAAAAAGTGTTATTCCTCTCTGACC ACTAAGCAAAGAAAAATAGTTTCAACCTTTCTATAAATTTCAGCTGATAA AAAGGGTGCCGGAATTAGAAGAGCAGAGGGGTGTCAACATTAGACCAGAG ACCAAGTTACGGTAAGTGTCAGCAGGGTTGGATTTTGGAGAGTCAAAATA GGGTTGGGAGTAGCATTTTGGTAGGTAAATATAGGACTGTAGGCCCTGGT AAGGATACCCCTAGGGTTGGGGCTAACCTTGGTATGTCAATATATATAGG TCTGTAAAATACACACTATAATAATTAGATTGTGAATNGATGCATCGTCT CCTCTATTTTGTACCGTAGATTGGTCTATTATCCACACCCCTCCCTTAAT TTCGACACCGGATCTGCAAAATATTCAAAGCAAACCTTTAATGAAATTCT TAGTATTACTCTTTATCAAACAAGTTCTTCCATCTCATTAGAAATTCAGT AAACATTGTAAAATTCTTTCAATAAAAGTAATTTTACACAACAACGCATG CAAACTGTCTTGTGTCAATCATTAAAATTTTACTACTTTATTACTACACT TCAAATCATGTGATCATAATAATTTGTGCGCTTAGGACCTGACCTGACCT GGTTTCTCCCCGTCCTTATTATTTATCGTGAGCACATGCTCTAGGCACTA AGAAGTCATAGGTACATACAACTCCCTATTTTTCATTTCAATCGCCGAGA CATGACAGGGCAGAGTTGTTGGCGTTATGGTGGTCTTATTAAATTCAAAA GGAACCCAGGTTCTTTTTATCAATTTTGGTTCACAGTAAAAGGGCCGTTT AGTTTGCGCATTAAAAGCCCTTTTAGAATGTCAAAGATGGTATTGTTGAT GCTCTCTAACTTTATTTTTAAGGGGAATTCGTTTGCTTAGACAGGCACAT GACTTTGTCTCCACTCAAACATAAAAATAACATTTAACTGTATCATCAAT AAAACCATCTTCATCTTTTCAAAGTTTGTTCTATGGCCCATAGCCCCATG TAATGATTTATTTTGCTTACTCGTCTGACATCTCCATAAGATCTTGGTTC TCATCTTCTTTTCTTCAAAACATTATTCCAATTACACCTTCTAAGCTCAG CTCCTAGATATGATCAAGCAATTCCTCTCTACTCATTCTCAAGCAGCCCA ATCTGCTCCAAGAGCACTTTCTCAGCTCTTCCTCAAGCAGCATCAACTTA AATTTCCTTTTCACAACTGTTCACTTTGGATCCCCCTCCCTTGTTTACCC TGTTTGTGGTTTTATTTATCCCGTTTGTGGTTTTATTTACCCTGTTTGTT GCTTTATTTACCCTGTTTGCTGTTTATATTCATTTTTTCAACAAAGCTAC TACTGGTAATTAGATTGATATAGATTACTTGTCTGCTTTCAGAGTTTCGG TACCATGGGATAGATCTTCCCATGCTACCGAAACCCTGGACAGTATTACT GTACTAAAAAATTCCTTGCATGCCAAAAGTTGTTTTGATTCCTATATCTT TGTGGAAAGCATGCTAATTAGTTTTCCAGTGATGAATACATCGTTTAAGT TTTCTTTTCAAAAATGACACTTATCATTTCTCATATATCAACAATCTGTA ATATGATGGGAAAATACAATTTACTGATTGATTAATTGATTGATTGATAA CTTTGGTATGTATTTGTTTATGAATGATTTTTTGTTTCGAAGACCAGCCT ACAGCTATGTCAAGATTTAAGGACGCATGTTGATAATACAATAAACTAAT CTACGGTACTTTCCCATCTTCTATCCTGATTTTCTGACTTCTGACCGCAC CTGATCTCAGACTTCGGTCTTCAGCTTATCACTTCCTTTTGTGTCTTGTG TATTCCTTTTGTTTAAAAAAAAAAATTATTTTTTCTTTCTTTCAAAATGT ATATTGGGTTTTTGTCATGGTTAGTCGCTAGTTTGTATTTTCTTCAGTTC AAATAACTTCACTATATTTCTCAAGTGTTTCTAACTGTTGTGTAAGTATT TTTCTGGAACTATTTCTAACAAAAATTCAAAACTTTTTTGTAGCACTTTA AGTTTCATGCGTATGATCATCAACTACATACAAATGTTCTAACTTTCTAA AATTCAAATTTTTACAAGTCGTAGGGTCGTAAAAAGTCATAAAATTATGA TAAAAAATTGAAACAAAAACAAAATGCTATTCTCAAAGGTCCGTTAGTTA TTTGACATTGTAATTTTTTAACGTGAACTTATTAATGTGTCAACATTTTG GCAACAATTTCTGAGCGAAATCATAACTAGCCTATAGGCATAAGTGAGAA TTTTTGAGCTGCTTGAACTGCTGAAAAGCTGATTGAACTGAAGATTTTCT ATAACCAGTATAACCTGCTATTCAGCAGAATGTCAGATAACTTGTGCAAT ATGCTGTCCACTTTAGATATTTGAAAGATAACAAATATGGAAAGGGAACC CTGCTTTCCAATACTTTCTACTATATTTCCTGTCTTTAAGATGGAAGTGA CAAAGAAAAAAATGCAAAAGTAGAAGAATTTCTACAATTACAGAATTAAT AAATAGACCTATTTCAAAAACTTCTTTTTTTATTTTAACATTATTAATTT TGTCTCCGTTGTTCTTTTTTTTCTAGGAGGAAGATGTGAAAGCAAAGGAG ATGCATCTTCATAAGTTGATTGAGCAGCGAAGAAAAAAACGAAAGTCAAA TATCTCTGAAGAAGATGAAACAAAAACACTCAAAAAGAAAAAGAAAAAGA AACTTGCTGACGATACTGAAGAATGCAAACAAGAGATTGTTGTGAAAGAA AAAAAGTTGAAAAAGAAGAAGAAAAAACAAAGTGATGACGAAGAGGATGA ATCAGAGGTCGAAAAACAAAAGCTGGAAAAGAAAAAGAAAAGCAAAACCA AAGTTGACAAGAGTATTGAAAATGCACTTGAGAATAGTGAAGATGAATCT AGTATTTTGAGAGAAGATTCGACTGATAAGAGATCAAAAAAGAAAGAGAA CAGCCTTGAAGGAGTTGAAATAGAAGAAATTAATGAACAAATTGAAGAGG AAAATGAAGAAAAACATAACAATGATGACTTACAACAAGAACCAGAAAAA GAACACTCATTTCCCATACTTGGGAAACAAGTACACAGATCTAAAGGACC GGTTAAAAGGAATTTACCACGTTGGCTTGCAGAACCTAAAATCATAAGTT CACGAACTGATACACATAATGAACACAAAATTGAAGAACTTGACTTTCTG TCATGTAACACTATTAAAAATCTTGAGAGAATGGGCGTAAAACATCTTTT CCCCGTGCAATCACATGTGGTACCTACTGTCATGGACATGTTTAAAAATA AGAAACCATGTTTCCCATGCAGAGATATTTGCGTTCAAAGTCCAACGGGA AGTGGGAAAACGCTTAGTTATGTTATGCCAGTTATTGAAGCAATGTCTAA AAACATTATTCGAGATTTACAATGTTTGGTTGTTCTCCCTACAAAAGATT TGGCAGCCCAAGTGAAGGTGACTTTTGATCAATGTGTTGTTGGGACTAAT TTGAAAGTTGGCCTTGTTGCTGGTGTGAAATCATTTGCTAAAGAACAAGA AAGTATCATTACTGCAAGGTGAGATTTCATTTCTGAGTTGAAGAATTTTT TCAAACTTGATTTTACTTCTTTAATGAGAAATTGACCTACCAAATTAAGA TAAATTATCCTGAGTGAGGATGCGTGTAAAAATCTTCATCGATTTATGTT TAGAAACACTGTTGGCATAGAATATCCTCAGAATATTTCAGAAATTGAAG GATAATAAAAGAAGTGTATTCATGCTTGTGAAATCTTCTTAAATTGCTTT AAATTCTAGACCAACAGGTTTTCACACTTTGATCGACATCCTGGTATGTT CTCCAGGTCGGCTTGTGGATCATTTGAAGTTGACACCTGGTTTCAGCTTG GCTCACCTAAAGTATATGGTCATTGATGAGGCTGATCGACTGCTTTCTGA TAGTTATGCAAACTGGCTGGCTCTTTCAATGAAATCTGTACAAGCTGAGT GAGGATTCCTTCCTTTTCCTCCCCTTAGTAGGATNCAATGAAATCTGTAC AAGCTGAGTGAGGATTCCTTCCTTTTTCTCCCCTTAGTAGGATCAAAATG AATTATGTGGATCCAGTTCAAGTGTCATGAAAATTAGCCTCTTTCAGCTT TAATTGAGCAGCTTCGCCCGACCTTACACCTGAACAATTAAAAATAAAAA CAAGCAAATGACTTATTGTTCAAATTTCACATTCGAATGGATATTGTTTC AAAACTCTGTTTACTCCTCACGTTCTATCTTTTGCTTTTGCTCTTCAAAA GACCTAGGAAGCTTTTTATGTTATTTTCACTTTCATTATTTATTTATTTT CAGTTCCAGCCACAAGATATTTCCATTGACACCAGCCAAATTCAGTAAAC CATTTCAACACGTTCAAAAATTCTTGTTTTCTGCTACATTGACGGAAAAT CCTGAAAAGATTGCAACATTGGAATTATTTAACCCTATACTGTTCCTTTC GCAATCTTCTCGAAAGAAAAAGGATGATGACCAGGATGTAGAAGGGGAAG AACAACCACCCGAGGACCAAGGTACTGCATGAGTGGAATTTTTAGTCTGA TTCCTAGTTCATTATACTAGGCCTCTATATTCTATTCTATCCCTTTGATA ATTCAACCGTCAAGTTCCTTTACTCGATTAATCCCCACAAATTTGCCCAA TTCAATCTGGTTGTCTTTTAGTTTATACGTCAGTTATTATGAAGTAATCC CAAGCATGTGTTTAATCAAGGAAATTGGTTTGATTGAATACTATTCTTGA ATTTTCCGTATAATATTGTTTGGTTTACTGAGTTTATTGTCAGACCTTCA CGGGAGACAGCAAGTACTTTTGTATGATACTTCTAATTCATGTACATTAA TTGTTCTGGAAAGAATTTTGAGATTGGTTGACGACGTGTAGTTAACACTA TTCACTTGTAGTTAGTGAGTTGTAAAATTTAATGCTCACCCTTCAGTACA CTACCACTGAGCTTAATATAGCCTGGAGGTAGTTTCTCAATCTCGGCCAT ACAAAATCTGTTGATCGGAGTTTTTTTGAAAGTGGTACCCCCCGGGGGGG GGCACTGGGTTTGCGGACTGACGGTATGTGCGGGCCAAAAATTGGCTTTT AAAATTGCACCCTTACAGTGCAGCAAAAATCAGTGAAAATCATACCCTTA GAGTGCATTTTCCCCAAAATTTTCTATCCTTTTCGTGCAAAAAATGATCA AAATTCTAGCATTTTTGGTCAAAATATCTAGATTTTTCAAAAATTTTCTG AAATTTCTACCCTTACAGTGCATCTCTAGTATCGGTGTAAATGCATTTAG CAATGGTACAATTAATGGCACCACTTTCAAAAAAAAAACTCTGATCAACG ATTTTGTTTGCCAGAGATCGAGAAATATAAGGGGATATAAAAAGTTCAAA TGTTGCATGAAATGTTGGACTGGTTTTCCCTGGCCCTAACCATTCACTGT GAACACAGCCCCTTACAATAGGTTAACTTTATTTATTTTCGTATTTTTCA GAAGTGAATTTGAAGACGTATGTGGTACCTGATCAACTGAAGGAACGAAT GATGGTCGTTGAAGCTCACCAGAAACCGTTAGCGTTACTTTACCTCATGA AGAACGAAGATCATCAATGTGCACTGTGCTTCACTAACTCCATTGAATCT ACTCATAGGTAGGAGCAAATATTTTTAAATAGGAACTATTGAATTATCGC ATTTTGGAAGTCTACCATGGAAAGTAATTCTCTGCAAATTGCAATTTGTA CTAACAATTTGGGAAAAAAAACAACATTATTGAATACTCTCGGGTACCTA ATAAACTGGGGGTTTGGGTTGAGTGGAAAAATCCTCAAAACTTAATAAGC AGGAAAATGTGCTGGGTGAGAAATTTAAGGAGACTAATACAGCAGAATTA GAAAAAAAGAGGGAACTTTCAAAAGCATCTTCCCAAAAATTAATTATAGA GGGGACGCTTATTAAGTATCCGAGAGTAATGGTTCAACAATAACATCTGG CTGAACTAGAATTGTTAAATTGTTAAAGGTTATCGTGGTCGGGAAGCTCA GTCGGTAGAGCATTCTCCTTGAAATCCAACCCTTTTAAGTTAGAACCGCC AGTGAATGAGAACATCCATTATTGGGGTAATCTGATCCAAGCTTTAAGTA ACTGGGAGTCGAGAGAATGTGTGGCGCTCCACCTCAGCTTTCGATCTCAC TGGTCTAGTGCAAATCACTCGTATGCCTAATTAATTTACTTATCGCAGCT AGGATAGATATCTCTCCTCTATGAGGAATGAAATTACACCAGTCGCAACG GGCGTGGAGGATATTCGCAAATACCTCAATAATTATACTTAAAATGTCTC TTATTCTTACGAACTTCGTAATGTATGGTCCTTTTGTTTTGCAGGTTGTT TTTATTGCTTCAACGTTTCAAGGATATCAAAGTTGCGGAATTTTCATCGA AGCTGAATGAAACTCAACGCAAAGGCATCTTACGAGATTTTCGTCAACAA AAAGTGAATTTGTTGATCGCTACCGATTCCATGTCACGTGGTATGGACAT TCGAAATGTCGACCTAGTTGTCAACTACGACGCACCAAACAATGCCAAAA CATATGTACACCGAGTTGGCCGGACAGCCAGAGGAGGAGAAGAAGGTTGG TTGGCATAAAATACTAAATTTCTTTCTGTTTTGAAGGTTTTTTCTTTGTT TTCCTCTGTTACTTCCAGGGATTAAAAGAATTAACAATAGTTGTCAAGCC CAAGAACTTCCGAGGCCTTCCCGAGTCTTCAAATTATCGTTATCTACTGA CGAAATGCTTGAGTATCATTGGATAGGATACCTTCGCATTTTCGTTTTTC AAGTTAAATTGAAACTTGCTAAAATCTTCCTTTGTTGATTCTAGAGAGCT AAGGCCAAAAGCTTTTCAACGGTGAAAATGTTTTCCCTGAAGCCCATCAG GTTTGGAGAAATTAAGGGACTTGATGTTTCAAAAGTTCGTAAAATTAGAG TACAGTGGAATCTCTTTTAACTCGAACTTTTACAACTCAAATGTCTCCTT AACTCGAGCAAGTTTCATGGTCTCTTCAGTTTTCTCGTCACACTTCAGTG AACAATGCCTTATAAACCTTACTCGATAACTCGAAAACTCCTTTAACTCG AACAAATTTATGTTCCGCATGCGTGTTCGAGTTAAAGAAACTCCACTGTA TTATCGATTTTAAATATTTATTCCCACTAGGTGAGGCAGTAACGATATTA CAAGGAAAGGAGGTGTTTCATTTCAAGAAAATGCATCAATCGTTAGACAC TGCGCGTCCCATAAAGAAAATTCGAATCAACGAACAGGCTTTCGAGGAAT TTGAAGACGATTACGAACTAGCGTTACGAGATTTGAAAACCAAAGTACAA AGCGAGAAAAAGAAAATCTAATATGAAATGATGATTTTGTTGACGTTATG TGCCGGCTGAGTGGTCTAATTTGTCTTCGTTTCTTTGTTGTTTCGTGAAG ATTTGCTTTTATTTTTATATATTTTTGACAAATAAGAGCTTAAAGGGGAA CTAAACATTTTTTGAGGTCATGCTTTTTTTGTATCTAAGTACTAGACGAT ATAGTATAACTTCAAAAAATATGACTTCCATTCTCAATCTCTTTCGTTGC TTTATAAAAAGATTTTCTGTAAACAAAAAACAGTTTTTTCAGACGTCATT CCTTGTAAGTATTAGATGGGGCCCCGTCTACTCACGATTTTTTCTGAACT CGATAGTAGACGGGTAGTTTTGGACAAATATTTCTACAATTTCTTGTAGA AACGCTTCTGATTGGCCGATTATGTCTATTGTTCTCCTGAAAAATTTATG CAACAAAATTCTGATGGGCCAGTTTTCAAACGGTTTTTTTCTGGTGGCAA ATTCAAAATCTCCAATTCTACCATACTAATTTTTATCTCATGTGAGCTTT GTGAAATGGAGTAAAAATTAGTAGGGGTCCAGACTATGTAAGTATGTGAT GTGATTTAGGTATTTTTTTGAAATATTAAAAAAAATTTCTCCTTTAAGAA ATAATATAGTTTTGTATCATCTTAATATCTAGTATATCTATATGATATGA AATATAATTTTGTCATGTTTGACCAA

Coding sequence (CDS) from alignment at scaffold_435:425442..437517-

>TCONS_00065301 ID=TCONS_00065301|Name=TCONS_00065301|organism=Clytia hemisphaerica|type=CDS|length=2043bp|location=Sequence derived from alignment at scaffold_435:425442..437517- (Clytia hemisphaerica)
ATGGATCTCTTTAGGATCGAAAGATTTGGGGCTGAGTGTTTGGATGAGGA
AGATGTGAAAGCAAAGGAGATGCATCTTCATAAGTTGATTGAGCAGCGAA
GAAAAAAACGAAAGTCAAATATCTCTGAAGAAGATGAAACAAAAACACTC
AAAAAGAAAAAGAAAAAGAAACTTGCTGACGATACTGAAGAATGCAAACA
AGAGATTGTTGTGAAAGAAAAAAAGTTGAAAAAGAAGAAGAAAAAACAAA
GTGATGACGAAGAGGATGAATCAGAGGTCGAAAAACAAAAGCTGGAAAAG
AAAAAGAAAAGCAAAACCAAAGTTGACAAGAGTATTGAAAATGCACTTGA
GAATAGTGAAGATGAATCTAGTATTTTGAGAGAAGATTCGACTGATAAGA
GATCAAAAAAGAAAGAGAACAGCCTTGAAGGAGTTGAAATAGAAGAAATT
AATGAACAAATTGAAGAGGAAAATGAAGAAAAACATAACAATGATGACTT
ACAACAAGAACCAGAAAAAGAACACTCATTTCCCATACTTGGGAAACAAG
TACACAGATCTAAAGGACCGGTTAAAAGGAATTTACCACGTTGGCTTGCA
GAACCTAAAATCATAAGTTCACGAACTGATACACATAATGAACACAAAAT
TGAAGAACTTGACTTTCTGTCATGTAACACTATTAAAAATCTTGAGAGAA
TGGGCGTAAAACATCTTTTCCCCGTGCAATCACATGTGGTACCTACTGTC
ATGGACATGTTTAAAAATAAGAAACCATGTTTCCCATGCAGAGATATTTG
CGTTCAAAGTCCAACGGGAAGTGGGAAAACGCTTAGTTATGTTATGCCAG
TTATTGAAGCAATGTCTAAAAACATTATTCGAGATTTACAATGTTTGGTT
GTTCTCCCTACAAAAGATTTGGCAGCCCAAGTGAAGGTGACTTTTGATCA
ATGTGTTGTTGGGACTAATTTGAAAGTTGGCCTTGTTGCTGGTGTGAAAT
CATTTGCTAAAGAACAAGAAAGTATCATTACTGCAAGACCAACAGGTTTT
CACACTTTGATCGACATCCTGGTATGTTCTCCAGGTCGGCTTGTGGATCA
TTTGAAGTTGACACCTGGTTTCAGCTTGGCTCACCTAAAGTATATGGTCA
TTGATGAGGCTGATCGACTGCTTTCTGATAGTTATGCAAACTGGCTGGCT
CTTTCAATGAAATCTGTACAAGCTGATTCCAGCCACAAGATATTTCCATT
GACACCAGCCAAATTCAGTAAACCATTTCAACACGTTCAAAAATTCTTGT
TTTCTGCTACATTGACGGAAAATCCTGAAAAGATTGCAACATTGGAATTA
TTTAACCCTATACTGTTCCTTTCGCAATCTTCTCGAAAGAAAAAGGATGA
TGACCAGGATGTAGAAGGGGAAGAACAACCACCCGAGGACCAAGAAGTGA
ATTTGAAGACGTATGTGGTACCTGATCAACTGAAGGAACGAATGATGGTC
GTTGAAGCTCACCAGAAACCGTTAGCGTTACTTTACCTCATGAAGAACGA
AGATCATCAATGTGCACTGTGCTTCACTAACTCCATTGAATCTACTCATA
GGTTGTTTTTATTGCTTCAACGTTTCAAGGATATCAAAGTTGCGGAATTT
TCATCGAAGCTGAATGAAACTCAACGCAAAGGCATCTTACGAGATTTTCG
TCAACAAAAAGTGAATTTGTTGATCGCTACCGATTCCATGTCACGTGGTA
TGGACATTCGAAATGTCGACCTAGTTGTCAACTACGACGCACCAAACAAT
GCCAAAACATATGTACACCGAGTTGGCCGGACAGCCAGAGGAGGAGAAGA
AGGTGAGGCAGTAACGATATTACAAGGAAAGGAGGTGTTTCATTTCAAGA
AAATGCATCAATCGTTAGACACTGCGCGTCCCATAAAGAAAATTCGAATC
AACGAACAGGCTTTCGAGGAATTTGAAGACGATTACGAACTAGCGTTACG
AGATTTGAAAACCAAAGTACAAAGCGAGAAAAAGAAAATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040938XLOC_040938Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065301-proteinTCONS_00065301-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065301-exon-scaffold_435-1575043694:437359..437517TCONS_00065301-exon-scaffold_435-1575043694:437359..437517Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1575043694:430050..431041TCONS_00065301-exon-scaffold_435-1575043694:430050..431041Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1575043694:429620..429808TCONS_00065301-exon-scaffold_435-1575043694:429620..429808Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1575043694:429047..429264TCONS_00065301-exon-scaffold_435-1575043694:429047..429264Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1575043694:427910..428066TCONS_00065301-exon-scaffold_435-1575043694:427910..428066Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1575043694:426923..427173TCONS_00065301-exon-scaffold_435-1575043694:426923..427173Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1575043694:425442..426337TCONS_00065301-exon-scaffold_435-1575043694:425442..426337Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1510915933:437359..437517TCONS_00065301-exon-scaffold_435-1510915933:437359..437517Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1510915933:430050..431041TCONS_00065301-exon-scaffold_435-1510915933:430050..431041Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1510915933:429620..429808TCONS_00065301-exon-scaffold_435-1510915933:429620..429808Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1510915933:429047..429264TCONS_00065301-exon-scaffold_435-1510915933:429047..429264Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1510915933:427910..428066TCONS_00065301-exon-scaffold_435-1510915933:427910..428066Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1510915933:426923..427173TCONS_00065301-exon-scaffold_435-1510915933:426923..427173Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1510915933:425442..426337TCONS_00065301-exon-scaffold_435-1510915933:425442..426337Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1491911889:437359..437517TCONS_00065301-exon-scaffold_435-1491911889:437359..437517Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1491911889:430050..431041TCONS_00065301-exon-scaffold_435-1491911889:430050..431041Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1491911889:429620..429808TCONS_00065301-exon-scaffold_435-1491911889:429620..429808Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1491911889:429047..429264TCONS_00065301-exon-scaffold_435-1491911889:429047..429264Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1491911889:427910..428066TCONS_00065301-exon-scaffold_435-1491911889:427910..428066Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1491911889:426923..427173TCONS_00065301-exon-scaffold_435-1491911889:426923..427173Clytia hemisphaericaexon
TCONS_00065301-exon-scaffold_435-1491911889:425442..426337TCONS_00065301-exon-scaffold_435-1491911889:425442..426337Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_435supercontigscaffold_435:425442..437517 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.0767 27.9745 17.4374 14.2841 19.9039 16.5863 19.2802 20.9044 17.011 16.6809 13.9175 16.3784 19.8756 20.8332 17.9536 18.8678 12.8903 14.8002 7.29923 7.69042 12.3634 12.5231 19.9774 19.2938 30.1694 31.9807 8.61391 10.3712 10.5922 11.6051
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR000629RNA-helicase_DEAD-box_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
Blast
BLAST of TCONS_00065301 vs. Swiss-Prot (Human)
Match: DDX51 (ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3)

HSP 1 Score: 311.997 bits (798), Expect = 5.232e-93
Identity = 200/515 (38.83%), Postives = 292/515 (56.70%), Query Frame = 1
Query:  649 ILGKQVHRSKGPVKRNLPRWLAEPKIISSRTDTHNEHKIEELDFLSCNTIKNLERMGVKHLFPVQSHVVPTVMDM----FKNKKPCFPCRDICVQSPTGSGKTLSYVMPVIEAMSKNIIRDLQCLVVLPTKDLAAQVKVTFDQCVVGTNLKVGLVAGVKSFAKEQESIITARPTGFHTLIDILVCSPGRLVDHLKLTPGFSLAHLKYMVIDEADRLLSDSYANWL----ALSMKSVQADSSHKIF------PLTPAKFSKPFQHVQKFLFSATLTENPEKIATLELFNPILFLXXXXXXXXXXXXXVEGEEQPPEDQEVNLKTYVVPDQLKERMMVVEAHQKPLALLYLMKNEDHQCALCFTNSIESTHRLFLLLQRFKDIKVAEFSSKLNETQRKGILRDFRQQKVNLLIATDSMSRGMDIRNVDLVVNYDAPNNAKTYVHXXXXXXXXXXXXXXXXILQGKEVFHFKKMHQSLDTARPIKKIRINEQAFEEFEDDYELALRDLKTKVQSEKKK 2151
            +LG    R    V+  LPRWLAEP  +  R  T +   IE++  +  +  K L   G+   FPVQ+ V+P +++     F   +  +   D+CV +PTGSGKTL++V+PV++A+   ++  ++ LVVLPTK+LA QV   F+     T L+V LV G KS AKEQES++     G+  L DI+V +PGRLVDH+  TPGFSL  L++++IDEADR++   + +WL    A + +S        +        +T A    P   +QK LFSATLT+NPEK+  L L  P LF +  +           G E    D + +   Y  P  L    +      KPL +L+L+        LCFTNS E++HRLFLL+Q F  + VAEFSS+    QR+ IL+ F Q K+ LLI+TD+ +RG+D++ V+LVVNYDAP   +TYVHRVGRTAR G+ G+A T+L   +   F +M      A  +++  ++ +  +     YE AL  L+  V+ E+K+
Sbjct:  162 VLGGFGKRKAPKVQPFLPRWLAEPNCVR-RNVTEDLVPIEDIPDVHPDLQKQLRAHGISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQKTADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAAFQSEDPADPCALLQRRQAQAVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAH---------RGLED--TDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLTEAG-APELQRHELSSKLLQPLVPRYEEALSQLEESVKEERKQ 663          
The following BLAST results are available for this feature:
BLAST of TCONS_00065301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX515.232e-9338.83ATP-dependent RNA helicase DDX51 OS=Homo sapiens G... [more]
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