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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065411 ID=TCONS_00065411|Name=TCONS_00065411|organism=Clytia hemisphaerica|type=transcript|length=7019bpRun BLAST on NCBI protein sequence of TCONS_00065411-protein >TCONS_00065411-protein ID=TCONS_00065411-protein|Name=TCONS_00065411-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1920bp MAVGENESLQYDITDDSVPPYNPKHRFSLAFKRASYQAPEEIWNLFSEAERun BLAST on NCBI transcript from alignment at scaffold_439:221260..245558- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065411 ID=TCONS_00065411|Name=TCONS_00065411|organism=Clytia hemisphaerica|type=transcript|length=24299bp|location=Sequence derived from alignment at scaffold_439:221260..245558- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_439:221260..245558- >TCONS_00065411 ID=TCONS_00065411|Name=TCONS_00065411|organism=Clytia hemisphaerica|type=CDS|length=5763bp|location=Sequence derived from alignment at scaffold_439:221260..245558- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065411 vs. Swiss-Prot (Human)
Match: MICA2 ([F-actin]-methionine sulfoxide oxidase MICAL2 OS=Homo sapiens GN=MICAL2 PE=1 SV=1) HSP 1 Score: 456.833 bits (1174), Expect = 3.867e-135 Identity = 237/488 (48.57%), Postives = 328/488 (67.21%), Query Frame = 3
Query: 360 EIWNLFSEAEDCCDIIDYFNALIKSLNIDRNIHGVELYDILKSKLTSWKCQSLWDLLNARLKHSEYKQGNAAKGKTCMIIGCGPIGLRTAIECLMLGCKTIIVEKRDEFARNNVLHLWPFLMTDFRNLXXXXXXXXXXXXCIEHINIKTLQCILLKVALILGAEVYVGVCFNNLVEPAD----ENTGWRGSFLPENHVLSKTEFDIIIGADGKKNILPGFEQMELRGALAIGITCNFVNNNTIEEARVNEISGISFQYNQNFFLKMEEKYGVRLENIVYYKDETHYFVMTAXXXXXXXXXXXXEDFSDPSKLITSSNIDKQKLMEFARSAVDFATDHQLPEDLEYNKLSNGEPDIALFDFTSLKKASNASRIIERNKKKLLLTLVGDSLIEPFWPTGSGAGRGVLSALDCAWLIKQYCSNHPPLACVRERENIYKLLSGITNDSLQKNHKAFTIDPKTRYTAFDSRKVSNIASLQSLYDTDDLENADL 1811
+++ F +A C + FN L + L++D H Y LKSK+T+WK ++LW L+ R H EYK+G + C+I+G GP GLRTAIE LG K ++VEKRD F+RNNVLHLWPF + D R LGAKKF+GKF AG I+HI+I+ LQ IL KVAL+LG E++V V F ++EP + + GWR FLP +H LS+ EFD+IIGADG++N L GF + E RG LAI IT NF+N N+ EA+V EISG++F +NQ FF ++E+ G+ LENIVYYKD THYFVMTA K SLL V+ D+ D L+ + N+++ L+ +AR A DFAT++QLP L++ G+PD+A+FDFT + + NA+ + ER +LL+ LVGDSL+EPFWP G+G RG L+A D AW++K + PPL + ERE++Y+LL T +++ KN + +T+DP TRY +S V ++ LY T +LE+ L
Sbjct: 14 QVFENFVQASTCKGTLQAFNILTRHLDLDPLDH-RNFYSKLKSKVTTWKAKALWYKLDKRGSHKEYKRGKSCTNTKCLIVGGGPCGLRTAIELAYLGAKVVVVEKRDSFSRNNVLHLWPFTIHDLRGLGAKKFYGKFCAGSIDHISIRQLQLILFKVALMLGVEIHVNVEFVKVLEPPEDQENQKIGWRAEFLPTDHSLSEFEFDVIIGADGRRNTLEGFRRKEFRGKLAIAITANFINRNSTAEAKVEEISGVAFIFNQKFFQDLKEETGIDLENIVYYKDCTHYFVMTAKKQSLLDKGVIINDYIDTEMLLCAENVNQDNLLSYAREAADFATNYQLP-SLDFAMNHYGQPDVAMFDFTCMYASENAALVRERQAHQLLVALVGDSLLEPFWPMGTGCARGFLAAFDTAWMVKSWNQGTPPLELLAERESLYRLLPQTTPENINKNFEQYTLDPGTRYPNLNSHCV-RPHQVKHLYITKELEHYPL 498 The following BLAST results are available for this feature:
BLAST of TCONS_00065411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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