TCONS_00065421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065421
Unique NameTCONS_00065421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1164

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065421 ID=TCONS_00065421|Name=TCONS_00065421|organism=Clytia hemisphaerica|type=transcript|length=1164bp
ATgccaaatatttcttttttctccCTGGTGTGGTGTAGTTGGCGAGGGAA
GAAGTAAAGATTTTTGTTCAGTGTAACGAAAAAAGCAATTTTATGAAGTA
TTCATGATAAATCCTGAGAAGAATCTTACAAACTAATTCCCACCATAGag
gcttttttttaaatattgtcaACTAAAACATTCATGGCATTTAACACAAC
GTTACTTTTATTGGTTTTCTTGTTTCTATCTGTGAATTGTTATCATAAAG
AATGTCATCCACGATGTGGAGCTATACCTTGGCATGTCGCTGGAATGTGT
GATGGCTTGACTGGAAGATGTATATGTTTTTATGGATGGACTGGACCTAA
TAGCAAATTCAGGATTGGAACGAGAAATAAGATTGAAGCAGATTATTGTT
CAGAAGCTTGCCACTACACACATGATTATAGgaaCACACAGTGCGTGTAC
CGTGGAACAGGACCAACAGAAGCATACAAAGAATGTCAACCACTTTGTGG
ACATATCATTTTTCGTCATGCTGGAGAATGTTTGAAAGACAAATACGGTA
AAGAGACGGGTAAATGTTTATGTTGGTGGGGCTGGACCGGACCTGGGGCC
CAATACCGTAGCGACGGACGTATAGAAGCTGATTATTGTGTTTTACCGTG
TTACTATACTGTCGGCTTTAGTAACCCAGTCTGTGCACAAGGAATGAATG
AATATGTTTGATTGGAAAGTTTTTGCTTGTTGAAAGATAATTCATAAGTT
TTGGTTAATTTATGAAGAATACGTTGAAatccattcgctttaagtgtgca
ctccTTTTTGTTAGCATGTGGAGACCATGTCAGCATTATTAGAGTAATTC
CCTAAAAAGTGGTTTCCACATGAAAGCATAAAAGACCGCACACTTTAAAA
GCGAATAGACTATAATTGGATTGTTATGAACTATATGTACAAAGGACTCT
AGTTTCATCGTTTGGCAACAAACCAGATTGTCCGAGTAACTGTAGTTTTA
ATTAAAGAGGAATCGAAATGGGACCAGATTTTGATGTTGACGTTAAAATA
TGGCAAGAAAAAAAATGCTttaatatattttgatttttaagtaGCTTCTA
TTGtaataaatgtattttttgcTTTGACTTTGTTAgcataataaaaattt
taagcgACAAGAAT
Run BLAST on NCBI

protein sequence of TCONS_00065421-protein

>TCONS_00065421-protein ID=TCONS_00065421-protein|Name=TCONS_00065421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MAFNTTLLLLVFLFLSVNCYHKECHPRCGAIPWHVAGMCDGLTGRCICFY
GWTGPNSKFRIGTRNKIEADYCSEACHYTHDYRNTQCVYRGTGPTEAYKE
CQPLCGHIIFRHAGECLKDKYGKETGKCLCWWGWTGPGAQYRSDGRIEAD
YCVLPCYYTVGFSNPVCAQGMNEYV
Run BLAST on NCBI

transcript from alignment at scaffold_439:332060..333772-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065421 ID=TCONS_00065421|Name=TCONS_00065421|organism=Clytia hemisphaerica|type=transcript|length=1713bp|location=Sequence derived from alignment at scaffold_439:332060..333772- (Clytia hemisphaerica)
ATGCCAAATATTTCTTTTTTCTCCCTGGTGTGGTGTAGTTGGCGAGGGAA
GAAGTAAAGATTTTTGTTCAGTGTAACGAAAAAAGCAATTTTATGAAGTA
TTCATGATAAATCCTGAGAAGAATCTTACAAACTAATTCCCACCATAGAG
GCTTTTTTTTAAATATTGTCAACTAAAACATTCATGGCATTTAACACAAC
GTTACTTTTATTGGTTTTCTTGTTTCTATCTGTGAATTGTTATCATAAAG
AATGTCATCCACGATGTGGAGCTATACCTTGGCATGTCGCTGGAATGTGT
GATGGCTTGACTGGAAGATGTATATGTTTTTATGGATGGACTGGACCTAA
TAGCAAATTCAGGATTGGAACGAGAAATAAGATTGAAGCAGATTATTGTT
CAGAAGCTTGCCACTACACACATGATTATAGGTAGGGAAATGCAGATGTT
TTGTTTTTGAAATTGCTTACTGCGAATTAAAAATGAAAATTTAAAAATGT
TTGCCACGACCATGAATGTTTGTAAAGATGAAAATAATATTGCAGATGCT
TTTAACTTTTGCTTAGAGTTTAAATTGTGTTTGTATTCGTGTCGAGAAGA
TAATTGTTGGATATAATTATCAAATGAAAAATCTTTGAAAATGAATATGA
AAACTTGAAATTTCTTTCACGTTGAGCATGTTAACATTGAAGATACACTG
ATGTAAAAATGGTTCTCAATTTGATTCGTTATAATAACGTTATAAGGCTT
TGATTACCAAAATGTTAAGAACAAGTTAAGGCATTTTAAGGCTTTGGAAA
CTCGATTTCTTAGGAAAATGGACAAAAATACTCACAAAATGAAAAAAATA
AGAAACATTTTAAGGCTTAAACCTAAAAAATTTAAGAACATCCGAAAGCT
TCAAAAACTTTGGATGCCCTTACAAAACAAAAACGTGTTTCTCCCTAAAA
AAATATTTTATCGGAATTTTATATTTTTAGGAACACACAGTGCGTGTACC
GTGGAACAGGACCAACAGAAGCATACAAAGAATGTCAACCACTTTGTGGA
CATATCATTTTTCGTCATGCTGGAGAATGTTTGAAAGACAAATACGGTAA
AGAGACGGGTAAATGTTTATGTTGGTGGGGCTGGACCGGACCTGGGGCCC
AATACCGTAGCGACGGACGTATAGAAGCTGATTATTGTGTTTTACCGTGT
TACTATACTGTCGGCTTTAGTAACCCAGTCTGTGCACAAGGAATGAATGA
ATATGTTTGATTGGAAAGTTTTTGCTTGTTGAAAGATAATTCATAAGTTT
TGGTTAATTTATGAAGAATACGTTGAAATCCATTCGCTTTAAGTGTGCAC
TCCTTTTTGTTAGCATGTGGAGACCATGTCAGCATTATTAGAGTAATTCC
CTAAAAAGTGGTTTCCACATGAAAGCATAAAAGACCGCACACTTTAAAAG
CGAATAGACTATAATTGGATTGTTATGAACTATATGTACAAAGGACTCTA
GTTTCATCGTTTGGCAACAAACCAGATTGTCCGAGTAACTGTAGTTTTAA
TTAAAGAGGAATCGAAATGGGACCAGATTTTGATGTTGACGTTAAAATAT
GGCAAGAAAAAAAATGCTTTAATATATTTTGATTTTTAAGTAGCTTCTAT
TGTAATAAATGTATTTTTTGCTTTGACTTTGTTAGCATAATAAAAATTTT
AAGCGACAAGAAT

Coding sequence (CDS) from alignment at scaffold_439:332060..333772-

>TCONS_00065421 ID=TCONS_00065421|Name=TCONS_00065421|organism=Clytia hemisphaerica|type=CDS|length=1056bp|location=Sequence derived from alignment at scaffold_439:332060..333772- (Clytia hemisphaerica)
GAACACACAGTGCGTGTACCGTGGAACAGGACCAACAGAAGCATACAAAG
AATGTCAACCACTTTGTGGACATATCATTTTTCGTCATGCTGGAGAATGT
TTGAAAGACAAATACGGTAAAGAGACGGGTAAATGTTTATGTTGGTGGGG
CTGGACCGGACCTGGGGCCCAATACCGTAGCGACGGACGTATAGAAGCTG
ATTATTGTGTTTTACCGTGTTACTATACTGTCGGCTTTAGTAACCCAGTC
TGTGCACAAGGAATGAATGAATATGTTTGAATGGCATTTAACACAACGTT
ACTTTTATTGGTTTTCTTGTTTCTATCTGTGAATTGTTATCATAAAGAAT
GTCATCCACGATGTGGAGCTATACCTTGGCATGTCGCTGGAATGTGTGAT
GGCTTGACTGGAAGATGTATATGTTTTTATGGATGGACTGGACCTAATAG
CAAATTCAGGATTGGAACGAGAAATAAGATTGAAGCAGATTATTGTTCAG
AAGCTTGCCACTACACACATGATTATAGGAACACACAGTGCGTGTACCGT
GGAACAGGACCAACAGAAGCATACAAAGAATGTCAACCACTTTGTGGACA
TATCATTTTTCGTCATGCTGGAGAATGTTTGAAAGACAAATACGGTAAAG
AGACGGGTAAATGTTTATGTTGGTGGGGCTGGACCGGACCTGGGGCCCAA
TACCGTAGCGACGGACGTATAGAAGCTGATTATTGTGTTTTACCGTGTTA
CTATACTGTCGGCTTTAGTAACCCAGTCTGTGCACAAGGAATGAATGAAT
ATGTTTGAATGGCATTTAACACAACGTTACTTTTATTGGTTTTCTTGTTT
CTATCTGTGAATTGTTATCATAAAGAATGTCATCCACGATGTGGAGCTAT
ACCTTGGCATGTCGCTGGAATGTGTGATGGCTTGACTGGAAGATGTATAT
GTTTTTATGGATGGACTGGACCTAATAGCAAATTCAGGATTGGAACGAGA
AATAAGATTGAAGCAGATTATTGTTCAGAAGCTTGCCACTACACACATGA
TTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040998XLOC_040998Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065421-proteinTCONS_00065421-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065421-exon-scaffold_439-1575043694:333342..333772TCONS_00065421-exon-scaffold_439-1575043694:333342..333772Clytia hemisphaericaexon
TCONS_00065421-exon-scaffold_439-1575043694:332060..332792TCONS_00065421-exon-scaffold_439-1575043694:332060..332792Clytia hemisphaericaexon
TCONS_00065421-exon-scaffold_439-1510915933:333342..333772TCONS_00065421-exon-scaffold_439-1510915933:333342..333772Clytia hemisphaericaexon
TCONS_00065421-exon-scaffold_439-1510915933:332060..332792TCONS_00065421-exon-scaffold_439-1510915933:332060..332792Clytia hemisphaericaexon
TCONS_00065421-exon-scaffold_439-1491911889:333342..333772TCONS_00065421-exon-scaffold_439-1491911889:333342..333772Clytia hemisphaericaexon
TCONS_00065421-exon-scaffold_439-1491911889:332060..332792TCONS_00065421-exon-scaffold_439-1491911889:332060..332792Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:332060..333772 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0742989	0	0.0841251	0.0823032	0.100196	0	2.34031	2.14626	4.13228	2.86946	1.99478	3.58749	1.23535	0.410534	11.8763	6.54234	0	0.114337	0.157963	1.07443	0.0359182	0.0525589	0.0425948	0	0	0.0711941	0.101879	0	0	0.0840198
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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