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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065424 ID=TCONS_00065424|Name=TCONS_00065424|organism=Clytia hemisphaerica|type=transcript|length=7516bpRun BLAST on NCBI protein sequence of TCONS_00065424-protein >TCONS_00065424-protein ID=TCONS_00065424-protein|Name=TCONS_00065424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2217bp MFGQPSPRRELPSSSAASLFGGGGNMSNGLSQFDQVQFDSFVNETPSTSLRun BLAST on NCBI transcript from alignment at scaffold_439:341750..361708- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065424 ID=TCONS_00065424|Name=TCONS_00065424|organism=Clytia hemisphaerica|type=transcript|length=19959bp|location=Sequence derived from alignment at scaffold_439:341750..361708- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_439:341750..361708- >TCONS_00065424 ID=TCONS_00065424|Name=TCONS_00065424|organism=Clytia hemisphaerica|type=CDS|length=6651bp|location=Sequence derived from alignment at scaffold_439:341750..361708- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00065424 vs. Swiss-Prot (Human)
Match: SC16A (Protein transport protein Sec16A OS=Homo sapiens GN=SEC16A PE=1 SV=3) HSP 1 Score: 181.415 bits (459), Expect = 3.493e-45 Identity = 138/494 (27.94%), Postives = 231/494 (46.76%), Query Frame = 2
Query: 5645 RSSISSDQVLSELGDLTSELSFPNRSDTPPPEEVIKQRSTPLCFTRPHIKACFSKTGGLLNVVAPRQPLDGEVAVVQNVSIENIVGIPI----LKRFPGPLLRGDTNKKQISKFIVETIRVHLPQRYGDDPHQLFAHVALWEFVGLLVKQNGTFDGSDIADMLI----------------NLLPIVHDQ------------QHGRETKGFGKLCNPIQVPDNSAVEELEMLLATGRMKDALDHAMQAGLWGRAFMLGTLMGHKYLGSVQTKFTSSINKKDAIKTLFNHLSNKDPTSMKKRVNKD--TWVQNLCMLISQPTGHVDNDRKKILCFGDGLRDLGLVAASHICYIIANVPFGSHKNTECRMSLLGLEHKTYTDKSAAVWADPLNIQLTEIYQYARTLHDKSFIVPSFQSYKYQYAMTLVDYGYAPQSMAYLESIGQAIISDRSCELFSKELCQNITKHASRILIQDADRYEDVE-----MPEWVQKVQ 7009
RS+ SS E G +P + P E+V + ++P F+ PH+ A F G L+ V+ P P +G+ A+V+ S+E ++ ++ FPGPL + DT+K + F L D + LW F+ LL +QNGT G+DIA++L+ NL+ ++ Q T G + ++ E LL GR KDAL+ AM+ GLWG A +L + M + V T+F +S+ D ++T++ +S + P + ++ W +L M++S ++D + + + GD L GL+ A+H CY++A FG + ++ L+G H K A A IQ TE Y+YA++L ++ +PSFQ +K+ Y+ L + G A Q+ Y E+I ++I++ L+S L + + AS++ + D E E P W+ +Q
Sbjct: 1231 RSNFSSGPGFPEYG-------YPADTVWPAMEQVSSRPTSPEKFSVPHVCARFGPGGQLIKVI-PNLPSEGQPALVEVHSMEALLQHTSEQEEMRAFPGPLAKDDTHKVDVINFAQNKAMKCLQNENLIDKE---SASLLWNFIVLLCRQNGTVVGTDIAELLLRDHRTVWLPGKSPNEANLIDFTNEAVEQVEEEESGEAQLSFLTGGPAAAASSLE----RETERFRELLLYGRKKDALESAMKNGLWGHALLLASKMDSRTHARVMTRFANSLPINDPLQTVYQLMSGRMPAASTCCGDEKWGDWRPHLAMVLSNLNNNMDVESRTMATMGDTLASRGLLDAAHFCYLMAQAGFGVYTKKTTKLVLIGSNHSLPFLKFATNEA----IQRTEAYEYAQSLGAETCPLPSFQVFKFIYSCRLAEMGLATQAFHYCEAIAKSILTQP--HLYSPVLISQLVQMASQLRLFDPQLKEKPEEESLAAPTWLVHLQ 1703 The following BLAST results are available for this feature:
BLAST of TCONS_00065424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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