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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065437 ID=TCONS_00065437|Name=TCONS_00065437|organism=Clytia hemisphaerica|type=transcript|length=3641bpRun BLAST on NCBI protein sequence of TCONS_00065437-protein >TCONS_00065437-protein ID=TCONS_00065437-protein|Name=TCONS_00065437-protein|organism=Clytia hemisphaerica|type=polypeptide|length=944bp YXVAAHTSAGKTVVAEYAIALAQKHMRRAIYTSPIKALSNQKFRDFKGTFRun BLAST on NCBI transcript from alignment at scaffold_439:474447..501892- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065437 ID=TCONS_00065437|Name=TCONS_00065437|organism=Clytia hemisphaerica|type=transcript|length=27446bp|location=Sequence derived from alignment at scaffold_439:474447..501892- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_439:474447..501892- >TCONS_00065437 ID=TCONS_00065437|Name=TCONS_00065437|organism=Clytia hemisphaerica|type=CDS|length=2835bp|location=Sequence derived from alignment at scaffold_439:474447..501892- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065437 vs. Swiss-Prot (Human)
Match: SKIV2 (Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3) HSP 1 Score: 929.087 bits (2400), Expect = 0.000e+0 Identity = 473/940 (50.32%), Postives = 642/940 (68.30%), Query Frame = 1
Query: 7 VAAHTSAGKTVVAEYAIALAQKHMRRAIYTSPIKALSNQKFRDFKGTFPEVGLLTGDVQIKPESACLIMTTEILRSMLYNGSDVIRDVEWVIFDEIHYINDADRGVVWEEVLIMLPSHVGIILLSATVPNTLEFAAWIGKTKQKEVYVVQTKKRPVPLEHFLFTGNSNKTSNELFCILDRKGKFAVEGYRAALQAKKARASKSDESYGPK-GTRQGNPKQDRNVWQSVVQMLKKKEQLPVVAFTLSKKKCDSNADMVKNSDLITMTEQSHIITFFNKSVSKLKGSDRELPQVKWMEELLRHGIGVHHSGILPILKEVVEMLFQKGLIKILFATETFAMGVNMPARTVVFDSTRKFDGEKMRELLSSEYIQMAGRAGRRGLDTTGMVIMLCKGDVPETSVLHAMMLGMPTKLESRFRLTYYMILNLLRVKQLTVQDMMKRSFAEYYQQKDAPENXXXXXXXXXXXXXXQDPDCQLCAIDLKNYYLTWAELLQRKKELKVKIFGSSVAQKCLTSGRVVLVTNENYHNALGVILKAGTLDXXXXXXXXXKDPLEKKYIVLLICDKVYELRCMNQEELGASNGSTTQDNLDNKEYTKRFLSTDIYVPEDESGQIVEEITAVCIEEILDRSVTIDATKIIDNHKRRLIPRFRDNPPSQSTIMATQELLNMAFDWRTTDQSPIIDPIRDMKITDIDFVDQSKRVNVLQNKLNDFQCLQCKKINEHFNLMRANMQVRIDVSKLQLQLSDENLQLIKEYEQRIMVLQKLDYIDKDKTLRHKGRVAFEISNHEVMITELLINNILTDLHPAEIVSILSLFVFEQRRASKPTLTENLQTVFCQVKETATRVAECQRECGLDTTVEEYVGGLHPGLMEVVYEWARGMPFKDVMNLTDVSEGNIVRCIQRLDELCRDVRKASHVIGVQILCDKMEEGMSLIRRDIVFTASLY 2823
VAAHTSAGKTVVAEYAIALAQKHM R IYTSPIKALSNQKFRDF+ TF +VGLLTGDVQ+ PE++CLIMTTEILRSMLY+GSDVIRD+EWVIFDE+HYIND +RGVVWEEVLIMLP HV IILLSATVPN LEFA WIG+ K++++YV+ T RPVPLEH+LFTGNS+KT ELF +LD +G F +GY AA++AKK R SK +++G K T QG P QDR V+ S++ L+ + QLPVV FT S+ +CD A + + DL T +E+S I F + +++L+GSDR+LPQV M ELL G+GVHHSGILPILKE+VEMLF +GL+K+LFATETFAMGVNMPARTVVFDS RK DG R+LL EY+QMAGRAGRRGLD TG VI+LCKG VPE + LH MM+G P++L+S+FRLTY MILNLLRV L V+DMMKRSF+E+ +KD+ +E+ L EL K++ L++PD +DL YY EL + + ++ +I S K L++GRVV+V N+ +HNALGVIL+ + + + + L++CDK + ++ G + Y + +++PE V ++ + I + + ++ KI+++ +R P+F+ +PP + A QELL +A P +DP+ D+++ D+ V+ R L+ + QC+ + + +R MQ++ ++ +L+ LSD++L L+ EY QR+ VL+ L Y+D+ T++ GRVA +S+HE+++TEL+ +N L+ L P EI ++LS V + + L L+ +V+ A R+ E Q CGL+ TVEE+VG L+ GL+EVVYEWARGMPF ++ L+ EG +VRCIQRL E+CR +R A+ ++G +L KME +L+RRDIVF ASLY
Sbjct: 330 VAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQPTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSKAHEQALAELTKRLGALEEPDMTGQLVDLPEYYSWGEELTETQHMIQRRIMESVNGLKSLSAGRVVVVKNQEHHNALGVILQVSS------------NSTSRVFTTLVLCDKPL---SQDPQDRGPATAEVP--------YPDDLVGFKLFLPEGPCDHTVVKLQPGDMAAITTKVLRVNGEKILEDFSKRQQPKFKKDPPLAAVTTAVQELLRLA--QAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPRFPAQYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVACAMSSHELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNTLKQGIERVRAVAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLY 1244 The following BLAST results are available for this feature:
BLAST of TCONS_00065437 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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