TCONS_00065454 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065454
Unique NameTCONS_00065454
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length618

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065454 ID=TCONS_00065454|Name=TCONS_00065454|organism=Clytia hemisphaerica|type=transcript|length=618bp
GAATTGTCTTTCCTTTCTTCAGAtgctgaaggaaattttttttatctaag
ccCATAACTTTATTTTTAGATGTTTTATTTAATGCAAATTTATTCGGCAT
TTTATATTATACGTTGGATTGATTTTGTCAATCGGAAACTCCTTGCCGGC
AACTAGCCAGCTTTGTTTTTGTCGGCAAATTGTAGGATGACATACGGGGA
TAAGTGCCGGCAAAAGattgaaacaaattttcttgtttGTCGGTAAAGTG
CCGGTTATTTTACTTTATTGTCGGCATATTACTGAATAGTTTTCTTCATT
GCCGGAAAATTGCCAGCTATTTTATATAGTTACCGGCAGATTCCAGCAAA
AGTCTCCCTTTAAACCAaatccttttctaaaaataggatTTGCACAAATG
TTGTCAGCAAACTGTCTAGCAGCTTATTGCTGGCTGTAATTAATGGATTG
CCGGACTCAAAAAGAGTGTCACCGGCaagataactttttatttttaatgc
ctttttcatctactttttaaattgttgctaattttattttggttattcGA
CGTCTTTctattttacaaataaaatcaaaaatgaatttggtaacagtttg
gatttatttatttagatt
Run BLAST on NCBI

transcript from alignment at scaffold_439:23473..24090

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065454 ID=TCONS_00065454|Name=TCONS_00065454|organism=Clytia hemisphaerica|type=transcript|length=618bp|location=Sequence derived from alignment at scaffold_439:23473..24090 (Clytia hemisphaerica)
aatctaaataaataaatccaaactgttaccaaattcatttttgattttat
ttgtaaaatagAAAGACGTCgaataaccaaaataaaattagcaacaattt
aaaaagtagatgaaaaaggcattaaaaataaaaagttatcttGCCGGTGA
CACTCTTTTTGAGTCCGGCAATCCATTAATTACAGCCAGCAATAAGCTGC
TAGACAGTTTGCTGACAACATTTGTGCAAatcctatttttagaaaaggat
tTGGTTTAAAGGGAGACTTTTGCTGGAATCTGCCGGTAACTATATAAAAT
AGCTGGCAATTTTCCGGCAATGAAGAAAACTATTCAGTAATATGCCGACA
ATAAAGTAAAATAACCGGCACTTTACCGACaaacaagaaaatttgtttca
atCTTTTGCCGGCACTTATCCCCGTATGTCATCCTACAATTTGCCGACAA
AAACAAAGCTGGCTAGTTGCCGGCAAGGAGTTTCCGATTGACAAAATCAA
TCCAACGTATAATATAAAATGCCGAATAAATTTGCATTAAATAAAACATC
TAAAAATAAAGTTATGggcttagataaaaaaaatttccttcagcaTCTGA
AGAAAGGAAAGACAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041016XLOC_041016Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065454-exon-scaffold_439-1491911889:23473..24090TCONS_00065454-exon-scaffold_439-1491911889:23473..24090Clytia hemisphaericaexon
TCONS_00065454-exon-scaffold_439-1510915933:23473..24090TCONS_00065454-exon-scaffold_439-1510915933:23473..24090Clytia hemisphaericaexon
TCONS_00065454-exon-scaffold_439-1575043694:23473..24090TCONS_00065454-exon-scaffold_439-1575043694:23473..24090Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:23473..24090 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.34197	1.30281	4.4875	6.57306	1.63768	1.94118	1.22674	3.10625	0.835454	0.724333	0.615173	1.12326	0.865347	1.45565	0.246277	0.264293	0.325587	0.20023	0.276628	0.289471	0.167735	0	0.198915	0.0904212	0.745054	1.413	0.475766	0.253875	0.192555	0.196183
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065454 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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