TCONS_00065455 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065455
Unique NameTCONS_00065455
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065455 ID=TCONS_00065455|Name=TCONS_00065455|organism=Clytia hemisphaerica|type=transcript|length=474bp
CTATTAAAATTGGTTCTAACCTTTCAGACAATGCTTTTACTAAACTATTG
AAACCAATCAGATTTTTAGCCCTTTTTGCACTTCTTTTCTTTGCAATTCC
AAAATCGTATGAGACAACTTTTTTTCAGACACACCTAGATTTTGtccatc
tttcaaaaaatggtattttttttcaatatccaaaTGCAGTGTTTAATTCA
GGAGATCCAAACcttatttttctcaaagttaACTATACCCTTCTATTATC
AGGTGATATTGAACTAAACCCAGGTCCAAGAACaactaaagaaaacaaaa
gtgatcaaGGGTCTGCTACGTACATTGATTTTACAGACATGACCAATTAT
CAAGTATCTAAAGTTGTTTTAGGTTCCTTTAATCAGGCTAACATAGATTT
ATTTGGGCAAACCGCAGGAACACAATGTAGTGCAAATTCTTTGTATGCGA
TATTCTGGTCTCATTTTCGACGTG
Run BLAST on NCBI

transcript from alignment at scaffold_439:35447..35920

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065455 ID=TCONS_00065455|Name=TCONS_00065455|organism=Clytia hemisphaerica|type=transcript|length=474bp|location=Sequence derived from alignment at scaffold_439:35447..35920 (Clytia hemisphaerica)
CACGTCGAAAATGAGACCAGAATATCGCATACAAAGAATTTGCACTACAT
TGTGTTCCTGCGGTTTGCCCAAATAAATCTATGTTAGCCTGATTAAAGGA
ACCTAAAACAACTTTAGATACTTGATAATTGGTCATGTCTGTAAAATCAA
TGTACGTAGCAGACCCttgatcacttttgttttctttagttGTTCTTGGA
CCTGGGTTTAGTTCAATATCACCTGATAATAGAAGGGTATAGTtaacttt
gagaaaaataagGTTTGGATCTCCTGAATTAAACACTGCAtttggatatt
gaaaaaaaataccattttttgaaagatggaCAAAATCTAGGTGTGTCTGA
AAAAAAGTTGTCTCATACGATTTTGGAATTGCAAAGAAAAGAAGTGCAAA
AAGGGCTAAAAATCTGATTGGTTTCAATAGTTTAGTAAAAGCATTGTCTG
AAAGGTTAGAACCAATTTTAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041017XLOC_041017Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065455-exon-scaffold_439-1491911889:35447..35920TCONS_00065455-exon-scaffold_439-1491911889:35447..35920Clytia hemisphaericaexon
TCONS_00065455-exon-scaffold_439-1510915933:35447..35920TCONS_00065455-exon-scaffold_439-1510915933:35447..35920Clytia hemisphaericaexon
TCONS_00065455-exon-scaffold_439-1575043694:35447..35920TCONS_00065455-exon-scaffold_439-1575043694:35447..35920Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:35447..35920 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.831442	1.87426	1.86244	1.36912	1.97986	0.937265	1.71962	1.05441	0.715801	0.840175	0.834602	2.11753	1.26484	0.391986	0.624868	0.476197	0.905816	0.801274	1.18459	1.10453	0.923063	1.72023	0.627555	0	0.762517	1.64755	0.978023	1.32565	0	0.673673
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065455 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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