TCONS_00065462 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065462
Unique NameTCONS_00065462
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065462 ID=TCONS_00065462|Name=TCONS_00065462|organism=Clytia hemisphaerica|type=transcript|length=669bp
tttcagctagaaataaaacaggaaaaaacacaaaatagaaaaactatCAT
ATCATGGCGGCCACCAAATCGCCGTTTCTGAAAAATGCACCCGCTTCTTT
GCCAGATGAACCGCCCAGGCGTATGATTGCCACCCAACAAGAAATGATGG
ACGCCCAAGTTCCACTTCGATTTCGTGATTTCTGTGCACATCTATACATA
CCTTTAATGCAATGTCGTTATGAGACAAGCaaagcaccatggaaatgtaa
agaagaaaaacatGAATGGGAAGAGTGTGAAATGGCTGATTATTACCGAC
GCATGCGCGATAAATACCGTGAAACATTGAAAAAGCAAGCAGAGGAAAAA
GCCGCCGCGGCCGCTGAAAGCTCTTAGAGGAAAACAGAACTCTTGGAGAA
TTTTTTACTGAATTTTCTTGGTAAAAATGTTTCATAAAATGGGACTCGAT
TTCTTTGGAacaattgtttttttctgtttatttaCTACTTCTTATAGATA
GAACCCTGTATTTTTTTGTGAGTGAATCGAATAATTTTAGATGGTATTAC
ATGACCTTTTTTAGAATTATCATTTGTTCTTCGCTATTCTGCGCTATTGT
GTTAATAACTCCGAATTAACAAGATTAAATTTTTCGCTTATAAATTCATG
ACTAAAATCAATAATGTGC
Run BLAST on NCBI

protein sequence of TCONS_00065462-protein

>TCONS_00065462-protein ID=TCONS_00065462-protein|Name=TCONS_00065462-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MAATKSPFLKNAPASLPDEPPRRMIATQQEMMDAQVPLRFRDFCAHLYIP
LMQCRYETSKAPWKCKEEKHEWEECEMADYYRRMRDKYRETLKKQAEEKA
AAAAESS
Run BLAST on NCBI

transcript from alignment at scaffold_439:138524..139192

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065462 ID=TCONS_00065462|Name=TCONS_00065462|organism=Clytia hemisphaerica|type=transcript|length=669bp|location=Sequence derived from alignment at scaffold_439:138524..139192 (Clytia hemisphaerica)
GCACATTATTGATTTTAGTCATGAATTTATAAGCGAAAAATTTAATCTTG
TTAATTCGGAGTTATTAACACAATAGCGCAGAATAGCGAAGAACAAATGA
TAATTCTAAAAAAGGTCATGTAATACCATCTAAAATTATTCGATTCACTC
ACAAAAAAATACAGGGTTCTATCTATAAGAAGTAGtaaataaacagaaaa
aaacaattgtTCCAAAGAAATCGAGTCCCATTTTATGAAACATTTTTACC
AAGAAAATTCAGTAAAAAATTCTCCAAGAGTTCTGTTTTCCTCTAAGAGC
TTTCAGCGGCCGCGGCGGCTTTTTCCTCTGCTTGCTTTTTCAATGTTTCA
CGGTATTTATCGCGCATGCGTCGGTAATAATCAGCCATTTCACACTCTTC
CCATTCatgtttttcttctttacatttccatggtgctttGCTTGTCTCAT
AACGACATTGCATTAAAGGTATGTATAGATGTGCACAGAAATCACGAAAT
CGAAGTGGAACTTGGGCGTCCATCATTTCTTGTTGGGTGGCAATCATACG
CCTGGGCGGTTCATCTGGCAAAGAAGCGGGTGCATTTTTCAGAAACGGCG
ATTTGGTGGCCGCCATGATATGatagtttttctattttgtgttttttcct
gttttatttctagctgaaa

Coding sequence (CDS) from alignment at scaffold_439:138524..139192

>TCONS_00065462 ID=TCONS_00065462|Name=TCONS_00065462|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_439:138524..139192 (Clytia hemisphaerica)
CTAAGAGCTTTCAGCGGCCGCGGCGGCTTTTTCCTCTGCTTGCTTTTTCA
ATGTTTCACGGTATTTATCGCGCATGCGTCGGTAATAATCAGCCATTTCA
CACTCTTCCCATTCatgtttttcttctttacatttccatggtgctttGCT
TGTCTCATAACGACATTGCATTAAAGGTATGTATAGATGTGCACAGAAAT
CACGAAATCGAAGTGGAACTTGGGCGTCCATCATTTCTTGTTGGGTGGCA
ATCATACGCCTGGGCGGTTCATCTGGCAAAGAAGCGGGTGCATTTTTCAG
AAACGGCGATTTGGTGGCCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041024XLOC_041024Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065462-proteinTCONS_00065462-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065462-exon-scaffold_439-1491911889:138524..139192TCONS_00065462-exon-scaffold_439-1491911889:138524..139192Clytia hemisphaericaexon
TCONS_00065462-exon-scaffold_439-1510915933:138524..139192TCONS_00065462-exon-scaffold_439-1510915933:138524..139192Clytia hemisphaericaexon
TCONS_00065462-exon-scaffold_439-1575043694:138524..139192TCONS_00065462-exon-scaffold_439-1575043694:138524..139192Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:138524..139192 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
204.845	214.573	283.546	314.057	77.9021	59.8333	98.3638	103.227	141.488	126.068	110.488	124.971	80.9416	77.5065	125.077	126.096	246.934	244.079	62.8014	45.7275	123.412	134.869	134.238	125.177	172.071	178.401	163.496	147.852	94.5061	80.0645
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008698NADH_UbQ_OxRdtase_B18_su
Vocabulary: Molecular Function
TermDefinition
GO:0008137NADH dehydrogenase (ubiquinone) activity
GO:0003954NADH dehydrogenase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003954 NADH dehydrogenase activity
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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