TCONS_00065464 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065464
Unique NameTCONS_00065464
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065464 ID=TCONS_00065464|Name=TCONS_00065464|organism=Clytia hemisphaerica|type=transcript|length=238bp
ATGGCTCTTTACAGgaattttggtttttcttcagagtggtaggtgaaaga
aaaatagaggacaTCAAATAACATTTATTTGCTTTTGGTGCCAGGGGAAT
TACTTCCACAGTTAGAAATAGACGATATCGTATCAAGTATATAGCTCATC
ATTCTTTCCAAGTTCAATTTGCTTATGGAACCGTCTACCTGATGATATTG
TAAATATTGTAGAATGTGATAAATTTGAAGAGAAATNN
Run BLAST on NCBI

transcript from alignment at scaffold_439:251947..252184

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065464 ID=TCONS_00065464|Name=TCONS_00065464|organism=Clytia hemisphaerica|type=transcript|length=238bp|location=Sequence derived from alignment at scaffold_439:251947..252184 (Clytia hemisphaerica)
NNATTTCTCTTCAAATTTATCACATTCTACAATATTTACAATATCATCAG
GTAGACGGTTCCATAAGCAAATTGAACTTGGAAAGAATGATGAGCTATAT
ACTTGATACGATATCGTCTATTTCTAACTGTGGAAGTAATTCCCCTGGCA
CCAAAAGCAAATAAATGTTATTTGAtgtcctctatttttctttcacctac
cactctgaagaaaaaccaaaattcCTGTAAAGAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041026XLOC_041026Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065464-exon-scaffold_439-1491911889:251947..252184TCONS_00065464-exon-scaffold_439-1491911889:251947..252184Clytia hemisphaericaexon
TCONS_00065464-exon-scaffold_439-1510915933:251947..252184TCONS_00065464-exon-scaffold_439-1510915933:251947..252184Clytia hemisphaericaexon
TCONS_00065464-exon-scaffold_439-1575043694:251947..252184TCONS_00065464-exon-scaffold_439-1575043694:251947..252184Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:251947..252184 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.85774	2.71739	4.20686	2.05788	10.0211	17.8173	7.16526	6.70803	6.26193	6.78686	2.82321	9.27934	8.64868	3.20776	1.05489	0	0	1.42942	0.987411	3.09976	0	1.31416	0	0	5.98373	16.021	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065464 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top