TCONS_00065473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065473
Unique NameTCONS_00065473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065473 ID=TCONS_00065473|Name=TCONS_00065473|organism=Clytia hemisphaerica|type=transcript|length=304bp
gggatgcgtgattagCCATTTTTTGCTGATGATCAAAGACAAAAAACTGT
GCAAAATTGTGCTCAAAGTTACCACTTGAGGGCCTTACTTAGAGACCAAT
GTAGATGTTGTTTACTTAGACTTTTCTAAAGCTTTCGATAAAGTGGATCA
TTCAATTGTtctgtcaaaattcaaaaggctAGGAATAACTGGTAGAATCT
ATAATAGGATAGAGTCCTTTTTGAGAGACAGGCAACAAACTGTAGTGGTT
AATGGTGTGAAATCAAACAACCAAGAAGTTATCTCAGGTGTACCACAAGG
AAGT
Run BLAST on NCBI

transcript from alignment at scaffold_439:521565..521868

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065473 ID=TCONS_00065473|Name=TCONS_00065473|organism=Clytia hemisphaerica|type=transcript|length=304bp|location=Sequence derived from alignment at scaffold_439:521565..521868 (Clytia hemisphaerica)
ACTTCCTTGTGGTACACCTGAGATAACTTCTTGGTTGTTTGATTTCACAC
CATTAACCACTACAGTTTGTTGCCTGTCTCTCAAAAAGGACTCTATCCTA
TTATAGATTCTACCAGTTATTCCTagccttttgaattttgacagaACAAT
TGAATGATCCACTTTATCGAAAGCTTTAGAAAAGTCTAAGTAAACAACAT
CTACATTGGTCTCTAAGTAAGGCCCTCAAGTGGTAACTTTGAGCACAATT
TTGCACAGTTTTTTGTCTTTGATCATCAGCAAAAAATGGctaatcacgca
tccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041035XLOC_041035Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065473-exon-scaffold_439-1491911889:521565..521868TCONS_00065473-exon-scaffold_439-1491911889:521565..521868Clytia hemisphaericaexon
TCONS_00065473-exon-scaffold_439-1510915933:521565..521868TCONS_00065473-exon-scaffold_439-1510915933:521565..521868Clytia hemisphaericaexon
TCONS_00065473-exon-scaffold_439-1575043694:521565..521868TCONS_00065473-exon-scaffold_439-1575043694:521565..521868Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:521565..521868 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.61184	3.63851	2.95726	4.95981	6.54126	3.97615	7.67529	4.94004	1.88653	3.50516	3.78021	2.23647	1.98521	1.54624	1.27122	2.50106	0	0.574187	1.58654	2.07525	1.80377	1.58367	0.427813	0.388944	0.400603	2.14517	1.53487	0.546017	1.65654	1.68775
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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