TCONS_00065474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065474
Unique NameTCONS_00065474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length530

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065474 ID=TCONS_00065474|Name=TCONS_00065474|organism=Clytia hemisphaerica|type=transcript|length=530bp
gtttattaaatttttgagtCTAACATCGAATATTTGGAGCGAATCTAATA
TCAGGATTTTAGTGTGGATTTCTTTGGTTGCAGGCTAAAATTGTATCAAA
ACTGCTCTGGTTGCAAAAAATGACTGACATCTTCCTTCAACCCAACTGAT
ACTTGTATTAAAGtcaaaagtttctaataaacaCCCCTCCCTCTGAGGGG
GGTCATAGTGTGAACCCCCCTTTCTAAAGGGGGGTAGAGCCTTCAAAAAT
CACCAAAGGGGAGGGGTAGGGAAAAAACGTCTTTTAAAGGGAGGGGTAAG
GAATAAGGGAGGGGTagatcctctttctaataaaagaaacttTAGGCTCA
AGTAAGGCTTTGTTGGGTTCAAAGGGAGGGGTAAAGATTcttagggggaa
atttgtaatgATGTGCTACGGAACTTCGCACGGTTACTTCCCTATGCACT
AAAAAAGTCTTTTTAAGATTTAAGAACTGTTTTTGTTCGCATCCGAGTTT
ACCGGTTGGAAGATCAAGAGATGTTGATAT
Run BLAST on NCBI

transcript from alignment at scaffold_439:536641..537170

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065474 ID=TCONS_00065474|Name=TCONS_00065474|organism=Clytia hemisphaerica|type=transcript|length=530bp|location=Sequence derived from alignment at scaffold_439:536641..537170 (Clytia hemisphaerica)
ATATCAACATCTCTTGATCTTCCAACCGGTAAACTCGGATGCGAACAAAA
ACAGTTCTTAAATCTTAAAAAGACTTTTTTAGTGCATAGGGAAGTAACCG
TGCGAAGTTCCGTAGCACATcattacaaatttccccctaagAATCTTTAC
CCCTCCCTTTGAACCCAACAAAGCCTTACTTGAGCCTAaagtttctttta
ttagaaagaggatctACCCCTCCCTTATTCCTTACCCCTCCCTTTAAAAG
ACGTTTTTTCCCTACCCCTCCCCTTTGGTGATTTTTGAAGGCTCTACCCC
CCTTTAGAAAGGGGGGTTCACACTATGACCCCCCTCAGAGGGAGGGGtgt
ttattagaaacttttgaCTTTAATACAAGTATCAGTTGGGTTGAAGGAAG
ATGTCAGTCATTTTTTGCAACCAGAGCAGTTTTGATACAATTTTAGCCTG
CAACCAAAGAAATCCACACTAAAATCCTGATATTAGATTCGCTCCAAATA
TTCGATGTTAGactcaaaaatttaataaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041036XLOC_041036Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065474-exon-scaffold_439-1491911889:536641..537170TCONS_00065474-exon-scaffold_439-1491911889:536641..537170Clytia hemisphaericaexon
TCONS_00065474-exon-scaffold_439-1510915933:536641..537170TCONS_00065474-exon-scaffold_439-1510915933:536641..537170Clytia hemisphaericaexon
TCONS_00065474-exon-scaffold_439-1575043694:536641..537170TCONS_00065474-exon-scaffold_439-1575043694:536641..537170Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:536641..537170 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.284188	0	0.0931352	0	0.111974	0.220822	0.0735051	0.610686	0.7531	0.740843	0	0.170081	0.117488	0.245885	0.213719	0.312734	0.380169	0.230419	0	0.211808	0.303097	0.161737	0.490686	0.499931
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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