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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065500 ID=TCONS_00065500|Name=TCONS_00065500|organism=Clytia hemisphaerica|type=transcript|length=4660bpRun BLAST on NCBI protein sequence of TCONS_00065500-protein >TCONS_00065500-protein ID=TCONS_00065500-protein|Name=TCONS_00065500-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp MGEPIENGHAEISDEVKEKAESIKNEANQFFKNGKFDKALALYSEAIDLNRun BLAST on NCBI transcript from alignment at scaffold_44:76120..99356- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065500 ID=TCONS_00065500|Name=TCONS_00065500|organism=Clytia hemisphaerica|type=transcript|length=23237bp|location=Sequence derived from alignment at scaffold_44:76120..99356- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_44:76120..99356- >TCONS_00065500 ID=TCONS_00065500|Name=TCONS_00065500|organism=Clytia hemisphaerica|type=CDS|length=1479bp|location=Sequence derived from alignment at scaffold_44:76120..99356- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065500 vs. Swiss-Prot (Human)
Match: PPP5 (Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1) HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0 Identity = 309/496 (62.30%), Postives = 393/496 (79.23%), Query Frame = 2
Query: 758 ANGKNKTMGEPIENGHAEISDEVKEKAESIKNEANQFFKNGKFDKALALYSEAIDLNPNVAAYYGNRSFCNIKMDFFGAALEDANSAXXXXXXXXXXXXRRASANMALGKFKLSLRDYEAVAKVCPKDKDAQKKFTECKKLVHQQAFAQAIAVDDNKVSLVESLDLESMTIESTYEGPSLDEDGKVTKEFMDKLLPYLKNQKKIHKKCAYQILVNIKEYFEKCDSLIDVTIPKDKKLTVCGDIHGQFYDLLNIFEINGLPSEENPYLFNGDFVDRGSFSVEVILTLFGFKLLYPNHFFMSRGNHESATMNKMYGFEGEVVSKYTSKMADLFTEVYNLLPLCHLINKKILTMHGGLFSKDDVTIEDIRKVDRNRQPPDSGIMCELLWSDPQPQNGRAASKRGTGVSFGPDITQNFLNRNNLEYIIRSHEVKDEGYEVAHNGKCITVFSAPNYCDQMGNKGAFITLY-EDLKPNFTSFSAVPHPSVRPMAYANSMMSM 2242
A G+ EP + +D ++AE +K +AN +FK ++ A+ YS+AI+LNP+ A YYGNRS ++ + +G AL DA AI++DKKYIKGYYRRA++NMALGKF+ +LRDYE V KV P DKDA+ K+ EC K+V Q+AF +AIA D++K S+V+SLD+ESMTIE Y GP L EDGKVT FM +L+ + K+QKK+H+KCAYQILV +KE K +L++ T+ + +K+TVCGD HGQFYDLLNIFE+NGLPSE NPY+FNGDFVDRGSFSVEVILTLFGFKLLYP+HF + RGNHE+ MN++YGFEGEV +KYT++M +LF+EV+ LPL IN K+L MHGGLFS+D VT++DIRK++RNRQPPDSG MC+LLWSDPQPQNGR+ SKRG FGPD+T+ FL NNL+YIIRSHEVK EGYEVAH G+C+TVFSAPNYCDQMGNK ++I L DL+P F F+AVPHP+V+PMAYAN+++ +
Sbjct: 4 AEGERTECAEPPRD--EPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKL-EDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPHPNVKPMAYANTLLQL 496 The following BLAST results are available for this feature:
BLAST of TCONS_00065500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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