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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065501 ID=TCONS_00065501|Name=TCONS_00065501|organism=Clytia hemisphaerica|type=transcript|length=1627bp
CGAAAATAATTGggtaaaagagaaacatttcgAGAAAAAGGAGTGAGAAA
TTAAAGTATCAAGAAAGAAAACTAAAATGATTTgaagcaaaaatgaaaat
tcggtGTAGAAGGGAACAGTTTTTTATACTGATAGCCATTCTTCCTTTGG
AAGTGCTTAGTCAGCATTTATTTAATGATCGTTATATCAATgggaaacaa
aacaaaaggctTGTAAGCGACCAATACTTGAAAAATGCCGATGTCAGCGA
ACAGTATTGTATGGCTACATGTTCTTTgatgaaagaaaaatgtaaGTCCA
TCAATTACCATGCTGAACGCAAGGAGTGTGTTATGAACAAAGAAGCGGTG
GGTACATCAGAAGACAATCTGATTGATGATAAAGGATGGCGATTCTACCC
TAAAACAGAAGCAGGAGACACCCAGGAAAGAACAGTCAAATCAAACAGCT
TCGATTTGGAAAATGAAATTAAACCAGAAAAGAACCAGATTCTACATTTC
ATCCCGGTCATCAAGACAGAATGGAAATTGGAAGTCTACTTTCAAATCAA
AGACACAGGTTCACAAACTATGGAGATGTTCAGTTTCAGAAATAAAGAAA
CAACTGGGGCATCTATCAGAGCTGTCATCAAAACACAACCTAATCTGAAG
CTCACTATTGAAGTTTATGGGAAGGTGATTGAGCTACCGATAACGCTAGG
CACAGACCGGTGGTACAAACTTGATGTCATCCAACACAGATTGATGAGTC
ATCATTACTCAGGATACAAAGTCATGTTTATGATCGATGGATATTTGGAG
GTTGATGAAAGATTACCAACAGAAAATGTGACCGAATTGAGGGACACTGA
AGTATATTCATGCCACCATCTCCAGAAATCTTGCTTGAGAGGGCGAATCA
AGAAATTCAGATTCAGACAAACAGCTAGCAGTGCTCCAATCACAACTAGG
ACGACATTAGAGACTCTATCCGAATGGAATTGGCCATGGTGGGTGACATT
TCAGGCGAAAATTGATAGTTTCCTACCAAGTGGATATTGTGGGTTGATGG
GTTTTAAGGGAAATGATCATCCTCGCTCACCTTGGTTCGGAATCCATGGT
TCAAACAGAAAGCTTGAACTTACACTTTGGTATATGGATAATGGAGTAGA
AGTGAAAGTCCCTCGATATTATGGTAGTATCACTCAAGGAGTATGGTATT
TCATGAAAGCAAGAATCGAAGTTCGGCCTGGTGTTGGTTATTACTTTGTT
TTATACATCGATGGGAATTTAAAGTACCAGGTACCATTGACGGTGACTCA
ATTGATAGAGTTAACAAATGTCAATGTTGTTCCCCTCGGCCCATGGTCTC
CATGTTACGGAGCAAGTGTGATCAATGTAAACTACGGATATCTGAAGACA
CCGTGATTTGGTTATCATTATGAAGAAAATTTATACGATGGCAGATGATC
GCAACTAAACGTTACAAAAACACTcccaaaatggtgaaaataagaacatg
ttaagaacagttttaggcttaaaactcaaaaagttaagaacatccaaagg
cttaaattttttttaatgttctataaaaaaacgtgtggaCCTAAAACGGC
CAAAATGACCCACTtgaaacccggggg Run BLAST on NCBI protein sequence of TCONS_00065501-protein >TCONS_00065501-protein ID=TCONS_00065501-protein|Name=TCONS_00065501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp
MKIRCRREQFFILIAILPLEVLSQHLFNDRYINGKQNKRLVSDQYLKNAD
VSEQYCMATCSLMKEKCKSINYHAERKECVMNKEAVGTSEDNLIDDKGWR
FYPKTEAGDTQERTVKSNSFDLENEIKPEKNQILHFIPVIKTEWKLEVYF
QIKDTGSQTMEMFSFRNKETTGASIRAVIKTQPNLKLTIEVYGKVIELPI
TLGTDRWYKLDVIQHRLMSHHYSGYKVMFMIDGYLEVDERLPTENVTELR
DTEVYSCHHLQKSCLRGRIKKFRFRQTASSAPITTRTTLETLSEWNWPWW
VTFQAKIDSFLPSGYCGLMGFKGNDHPRSPWFGIHGSNRKLELTLWYMDN
GVEVKVPRYYGSITQGVWYFMKARIEVRPGVGYYFVLYIDGNLKYQVPLT
VTQLIELTNVNVVPLGPWSPCYGASVINVNYGYLKTP Run BLAST on NCBI transcript from alignment at scaffold_44:160552..164517- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065501 ID=TCONS_00065501|Name=TCONS_00065501|organism=Clytia hemisphaerica|type=transcript|length=3966bp|location=Sequence derived from alignment at scaffold_44:160552..164517- (Clytia hemisphaerica)
CGAAAATAATTGGGTAAAAGAGAAACATTTCGAGAAAAAGGAGTGAGAAA
TTAAAGTATCAAGAAAGAAAACTAAAATGATTTGAAGCAAAAATGAAAAT
TCGGTGTAGAAGGGAACAGTTTTTTATACTGATAGCCATTCTTCCTTTGG
AAGTGCTTAGTCAGCATTTATTTAATGATCGTTATATCAATGGGAAACAA
AACAAAAGGCTTGTAAGCGACCAATACTTGAAAAATGCCGATGTCAGCGA
ACAGTATTGTATGGCTACATGTTCTTTGATGAAAGAAAAATGTAAGTCCA
TCAATTACCATGCTGAACGCAAGGAGTGTGTTATGAACAAAGAAGCGGTG
GGTACATCAGAAGACAATCTGATTGATGATAAAGGATGGCGATTCTACCC
TAAAACAGTCAGTATTTCATTTTTGCCTTTTACGAACAGAAATAAACAGA
CTCGTTTTTTCATATGAACATTCAATTTTATAAGAACAATGAGGCTCAAA
ATCGTCGGAAAAATAAACAATTAAAGAACGATGCTGAGCCTGGAGATTTT
AAGCAATTCACAGCAATTCACAGCAACAGAAATCTAGAAAATTATTATCT
CTGACTAATATCCCACGAATTCCCAAAAAAATTTAACTTGCTTAATGGTG
AAATCTAATTTTGCTTCTTTTTCCAATTTTATTAGGCATTTTGCTAATCC
TAACAAGCAAAATAAAAAAATGGACCAAGGCTTTTGAAAAACTTATCTTT
AAAGATTAATTGATAGTCTGGAGACCGTGGTGAAGAATTTTTTCGTGCTA
TCTTCATTCTAGGAAGCAGGAGACACCCAGGAAAGAACAGTCAAATCAAA
CAGCTTCGATTTGGAAAATGGTAAGGAGAAAATATAATACTCCTTTTTTG
AACGAAGAAGGTTCAATACAGAGTTCGATAAATTATTGAAAACCAACGTA
TCAATGAACCAAGTGCAGAGAAAATTTATCTAATTAAATAAAAGCGATTC
TATTATTCAATTTTACGGCTAGAAGGATTGAATTTTCTTAATTTTTCCCA
AAGAAATTCATATCATCTTTTACATCCTAAAGCAAAAGCGCCATCACTTG
GGAAAGGTGAAAAACTCAGCTAAGATAGATTCTGTTTCCTTCCTGATATG
TGTCAAGTGTCTTTTGAACCATCACAGTTCAGTTCCGTTAAGACGTTAAG
ACCTCGCTCCACTGCAAAATTCAACCAAAGTTTCGTTCCCGGTGGGAAAA
ATACCCTACAATTTAAGCCCTACTAGCAAATTGACTTTGCTTTCATCCCC
ATTTTAAATTCAATTGAAGACAAGAAGCCGGAGCGGCGTGAAGGTCCAGC
TGACGTGGCAATAACCGAATGTCGTTCGTACCGGGTTCCTTAAGTGACGC
AATAAAGATTCCTTCCCATCCTCCACTCTGAGCTTCTATTCTTTGACACT
TTCTTTGTATTGCTAAGTTTTGAAAGTTTTTGATGCATTTTCCGAAATTT
CGAAACTTTTGCCGCTGATGGAGTTCGAACCTACTATATACAAAGCACCT
ATGATTAGAACGCCAGCGCTTTAACCACTCGGCCATCGAGTCACAACTGC
ATTATGCATTAAGGAGTTCAAAGTTCCTTATAAACATGGTATTTACTCCA
AACTCTACCCGGGTTAACTCCCATCCCCAACCCTAGCCCTAACCCTACCT
GACCCTACCTGAAACAACCCTTTAATCTAACCGAGAAATTTGACTCTACT
ACCAATTCAATCCAAAACATAGGTCAAACATCGCGTGGGTCGGTGGGGCA
AAAATTCTAGATCGGCGGTTGGTTTAGCCTGGACTTGTTAATTGATTGTG
CGCACAGGCCCCGACAAAGACAAAATCTTTTCGATCAGTTTCTTTTTAAA
GGTCCATTCTGTTGCGCGCTGGACCAAAAATTGCACTCCAAAACCATCCC
AACTGGATTTTTTTACCTGAGAACAATAGAATTTCTATTCCCATTGAGAT
TAAACACCAAAAAAATAGAAATATAAATAGATGGATAGAAATTCGATATT
TCCATCCCCACTTTGGGAAGAAGCTACTTTAGACGTACAAACTTTGGCGA
GCAGAAGCTTTGGCGAGGTCGAAAAATCGCGCAATCTACGACATTTACTT
TCACGAATTCGACAAAAAATAATTTTTTGCGAGCATAAACTTTCGTGAAA
TATTTTAAGTATGAAAATAGTGTTTTGATCGCTCAAATCGAGAATTTTCA
GAGACATTTACTTTCGCGAAAAGGGCTAAAATTTGCGAAAATCGCGAAAG
TTTCTGCTTGCGAAAGTTTGTACGTCCAAAGTACACTGGGCTGTGAGACA
GGGGTGTATGTATCTTTGAACCATCCCTGTGTAACCATCCCACTTGGACG
AATGTTTACTGAGATTTGAAAATGTTCCACCATAGAAATTAAACCAGAAA
AGAACCAGATTCTACATTTCATCCCGGTCATCAAGACAGAATGGAAATTG
GAAGTCTACTTTCAAATCAAAGACACAGGTTCACAAACTATGGAGATGTT
CAGTTTCAGAAATAAAGAAACAACTGGGGCATCTATCAGAGCTGTCATCA
AAACACAACCTAATCTGAAGCTCACTATTGAAGTTTATGGGAAGGTGATT
GAGCTACCGATAACGCTAGGCACAGACCGGTGGTACAAACTTGATGTCAT
CCAACACAGATTGATGAGTCATCATTACTCAGGATACAAAGTCATGTTTA
TGATCGATGGATATTTGGAGGTTGATGAAAGATTACCAACAGAAAATGTG
ACCGAATTGAGGGACACTGAAGTATATTCATGCCACCATCTCCAGAAATC
TTGCTTGAGAGGGCGAATCAAGAAATTCAGATTCAGACAAACAGCTAGCA
GTGGTAAAAGACTTTTTCATTTAAAGCTAATCCCTTTTTCGGGCTAATTC
TGTTAAATTTTCTAAGAAATTTGTCTCTTTTCCCAAAATTTTACAAAAAC
TCACCCTTCAGTATGAGGAAAGCTTTTTTCTATCTTTATGCCTTTTCGAA
CCTTCCTAGGATGTCTGAAATTAAGGTACACATCCCTTTAGAAATTCTAT
GTAATCATTGATTTGGATATACTTCTAGAAATCTAAATGAACAAAATATA
CCCCGTGCACCATATGGTTAGTCGTACGTAATTCTTATTTTTACTCCTCG
ATGTGTAAACCTCTCTTACGGACCAAACCTTTAGAAATAGAAAAATATGT
TTTTATGATCTTTTTTCTGTAGCTCCAATCACAACTAGGACGACATTAGA
GACTCTATCCGAATGGAATTGGCCATGGTGGGTGACATTTCAGGCGAAAA
TTGATAGTTTCCTACCAAGTGGATATTGTGGGTTGATGGGTTTTAAGGGA
AATGATCATCCTCGCTCACCTTGGTTCGGAATCCATGGTTCAAACAGAAA
GCTTGAACTTACACTTTGGTATATGGATAATGGAGTAGAAGTGAAAGTCC
CTCGATATTATGGTAGTATCACTCAAGGAGTATGGTATTTCATGAAAGCA
AGAATCGAAGTTCGGCCTGGTGTTGGTTATTACTTTGTTTTATACATCGA
TGGGAATTTAAAGTACCAGGTACCATTGACGGTGACTCAATTGATAGAGT
TAACAAATGTCAATGTTGTTCCCCTCGGCCCATGGTCTCCATGTTACGGA
GCAAGTGTGATCAATGTAAACTACGGATATCTGAAGACACCGTGATTTGG
TTATCATTATGAAGAAAATTTATACGATGGCAGATGATCGCAACTAAACG
TTACAAAAACACTCCCAAAATGGTGAAAATAAGAACATGTTAAGAACAGT
TTTAGGCTTAAAACTCAAAAAGTTAAGAACATCCAAAGGCTTAAATTTTT
TTTAATGTTCTATAAAAAAACGTGTGGACCTAAAACGGCCAAAATGACCC
ACTTGAAACCCGGGGG Coding sequence (CDS) from alignment at scaffold_44:160552..164517- >TCONS_00065501 ID=TCONS_00065501|Name=TCONS_00065501|organism=Clytia hemisphaerica|type=CDS|length=1314bp|location=Sequence derived from alignment at scaffold_44:160552..164517- (Clytia hemisphaerica)
ATGAAAATTCGGTGTAGAAGGGAACAGTTTTTTATACTGATAGCCATTCT
TCCTTTGGAAGTGCTTAGTCAGCATTTATTTAATGATCGTTATATCAATG
GGAAACAAAACAAAAGGCTTGTAAGCGACCAATACTTGAAAAATGCCGAT
GTCAGCGAACAGTATTGTATGGCTACATGTTCTTTGATGAAAGAAAAATG
TAAGTCCATCAATTACCATGCTGAACGCAAGGAGTGTGTTATGAACAAAG
AAGCGGTGGGTACATCAGAAGACAATCTGATTGATGATAAAGGATGGCGA
TTCTACCCTAAAACAGAAGCAGGAGACACCCAGGAAAGAACAGTCAAATC
AAACAGCTTCGATTTGGAAAATGAAATTAAACCAGAAAAGAACCAGATTC
TACATTTCATCCCGGTCATCAAGACAGAATGGAAATTGGAAGTCTACTTT
CAAATCAAAGACACAGGTTCACAAACTATGGAGATGTTCAGTTTCAGAAA
TAAAGAAACAACTGGGGCATCTATCAGAGCTGTCATCAAAACACAACCTA
ATCTGAAGCTCACTATTGAAGTTTATGGGAAGGTGATTGAGCTACCGATA
ACGCTAGGCACAGACCGGTGGTACAAACTTGATGTCATCCAACACAGATT
GATGAGTCATCATTACTCAGGATACAAAGTCATGTTTATGATCGATGGAT
ATTTGGAGGTTGATGAAAGATTACCAACAGAAAATGTGACCGAATTGAGG
GACACTGAAGTATATTCATGCCACCATCTCCAGAAATCTTGCTTGAGAGG
GCGAATCAAGAAATTCAGATTCAGACAAACAGCTAGCAGTGCTCCAATCA
CAACTAGGACGACATTAGAGACTCTATCCGAATGGAATTGGCCATGGTGG
GTGACATTTCAGGCGAAAATTGATAGTTTCCTACCAAGTGGATATTGTGG
GTTGATGGGTTTTAAGGGAAATGATCATCCTCGCTCACCTTGGTTCGGAA
TCCATGGTTCAAACAGAAAGCTTGAACTTACACTTTGGTATATGGATAAT
GGAGTAGAAGTGAAAGTCCCTCGATATTATGGTAGTATCACTCAAGGAGT
ATGGTATTTCATGAAAGCAAGAATCGAAGTTCGGCCTGGTGTTGGTTATT
ACTTTGTTTTATACATCGATGGGAATTTAAAGTACCAGGTACCATTGACG
GTGACTCAATTGATAGAGTTAACAAATGTCAATGTTGTTCCCCTCGGCCC
ATGGTCTCCATGTTACGGAGCAAGTGTGATCAATGTAAACTACGGATATC
TGAAGACACCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065501-exon-scaffold_44-1575043694:164111..164517 | TCONS_00065501-exon-scaffold_44-1575043694:164111..164517 | Clytia hemisphaerica | exon |
| TCONS_00065501-exon-scaffold_44-1575043694:163648..163705 | TCONS_00065501-exon-scaffold_44-1575043694:163648..163705 | Clytia hemisphaerica | exon |
| TCONS_00065501-exon-scaffold_44-1575043694:161615..162082 | TCONS_00065501-exon-scaffold_44-1575043694:161615..162082 | Clytia hemisphaerica | exon |
| TCONS_00065501-exon-scaffold_44-1575043694:160552..161245 | TCONS_00065501-exon-scaffold_44-1575043694:160552..161245 | Clytia hemisphaerica | exon |
| TCONS_00065501-exon-scaffold_44-1510915933:164111..164517 | TCONS_00065501-exon-scaffold_44-1510915933:164111..164517 | Clytia hemisphaerica | exon |
| TCONS_00065501-exon-scaffold_44-1510915933:163648..163705 | TCONS_00065501-exon-scaffold_44-1510915933:163648..163705 | Clytia hemisphaerica | exon |
| TCONS_00065501-exon-scaffold_44-1510915933:161615..162082 | TCONS_00065501-exon-scaffold_44-1510915933:161615..162082 | Clytia hemisphaerica | exon |
| TCONS_00065501-exon-scaffold_44-1510915933:160552..161245 | TCONS_00065501-exon-scaffold_44-1510915933:160552..161245 | Clytia hemisphaerica | exon |
| TCONS_00065501-exon-scaffold_44-1491911889:164111..164517 | TCONS_00065501-exon-scaffold_44-1491911889:164111..164517 | Clytia hemisphaerica | exon |
| TCONS_00065501-exon-scaffold_44-1491911889:163648..163705 | TCONS_00065501-exon-scaffold_44-1491911889:163648..163705 | Clytia hemisphaerica | exon |
| TCONS_00065501-exon-scaffold_44-1491911889:161615..162082 | TCONS_00065501-exon-scaffold_44-1491911889:161615..162082 | Clytia hemisphaerica | exon |
| TCONS_00065501-exon-scaffold_44-1491911889:160552..161245 | TCONS_00065501-exon-scaffold_44-1491911889:160552..161245 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_44 | supercontig | scaffold_44:160552..164517 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR003609 | Pan_app |
Blast
The following BLAST results are available for this feature:
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