|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065511 ID=TCONS_00065511|Name=TCONS_00065511|organism=Clytia hemisphaerica|type=transcript|length=2154bp
AAAAGTTGGGAGAAATTTGATATTTGACACTTAAGATATTCTGTCTAGCG
AGTGGTTCATAGACAGTACAATGGCTTCAATTTGTCAACGTTGGTTTGCA
CTGGTTCTTTTGTTGATGACGGTGGCCCAAGCTAAGCAGACAATTTGTCA
AGGCAGCAACCACCTACAACAGAAATTTGCATATGAACCTACActttcat
ttccatcaaaaaatTATCCACATCTTGCCATCAGCTATGACACAACATCA
AAAGTATCCAAAATACTGGCGCCATCATCAAACTCGGCTTGGAAGATAGT
ACCAGGGCTTTGTGGCCAAGGGTTCAGTTTTGAATCAACAACACAACCTA
ATCATTTCTTAAGACATCGAAACTTTCTCTTGTTCGTGGATCCTTTTGAA
AATACCGCCCTCTACAAAAACGACGCTTGCTTCAAACCTGTTGCTGGTCT
TGCCGATTGCAATGAAGTCTCGTTTCAATCGATCAACTATCCAGACCGTT
TCTTGCGACATCAAGGCTATCGAATGAAACTCCATCCAAATGACGGCTCG
TCTCTGTTCAAGAATGATGCAACATTTAATATTCAGACAATTTGTCAAGG
CAGCAACATTCTACAACAGAAATTTGCATATGAACCTACActttcatttc
catcaaaaaatTATCCACATCTTGCCATCAGCTATGACACAACATCAAAA
GTATCCAAAATACTGGCGCCATCATCAAACTCGGCTTGGAAGATAGTACC
AGGGCTTTGTGGCCAAGGGTTCAGCTTTGAATCAACAACACAACCTAACC
ATTTCTTGAGACATAGAAACTTTCTCTTGTTCGTGGATCCCTTTGAAAAT
ATCGCCCTCTACAAGAATGACGCTTGCTTCAAACCCGTCGCTGGTCTTGC
CGATTGCAATGAAGTCTCGTTTCAATCGATCAACTATCCAGACCGTTTCT
TACGACATCAAGGCTATCAAATGAAACTCCATCAAAATGACGGCTCTTCT
TTGTTCAAGAATGATGCAACATTTAATATTCAGACAATTTGTCAAGGCAG
CGACCACCTACAACAGAAATTTGCATATGAACCTACActttcatttccat
caaaaaatTATCCAAATCTTGCCATCAGCTATGACACAACATCAAAAGTA
TCCAAAATACTGGCACCATCATCAAACTCGGCTTGGAAGATAGTGCCAGG
GCTTTGCGGCCAAGGGTTCAGCTTTGAATCAACAACTCAACCTAACCATT
TCTTGAGACATCGACACCTTCTCTTGTTCGTGGATCCCTTTGAAAATACC
GCCCTTTACAAGAATGACGCTTGCTTCAAACCCGTCGCTGGTCTTGCCGA
TTGCAATGAAGTCTCGTTTCAATCCATCAACTATCCAGACCGTTTCTTGC
GACATCAAGGCTATCGAATGAAACTCCATCAAAATGACGGCTCGTCTCTG
TTCAAGAATGATGCAACGTTtaatatttgaatttcaaattctttggGATA
AAGACTCTTCTgtaactttttggacctaccccggtggaggtcctataaat
taaccgttgtatgttcgtccgttcgttagttaccagcttttctcgagatt
ggctcattagttttttctgattttttgcacaaagatgcataactataaac
cctcgaatgtgacggagcctgattttcgagaaaaaaattttttaggcaaa
tttgggccaaaaaattgctaaaaaacggtttttttggactttgtgaaaaa
ttggattattaattttttctcattttttctatgaaagtagggtaccatca
taggtaaaagatgggttaagcagatttttgctaaaaaaattttttggctc
aaaaaatgcatgtttatctataagaatcactattaataagcatacatgtt
cttagtcaaattactcaattatttttatgagatagatgtattttttgctc
atgagggcttacttttgaagaatatgtgtgtttagacatgaaatttagGC
TGCTTggtgtgtttttatagaaaaactggcctaattcgatatttttttat
aagcaggttatcaattacttaggtattagcttttctcgaggttggcgctt
tcattctttatgattttttgcacaaagatgcatagctataaaccctcgaa
tgtt Run BLAST on NCBI protein sequence of TCONS_00065511-protein >TCONS_00065511-protein ID=TCONS_00065511-protein|Name=TCONS_00065511-protein|organism=Clytia hemisphaerica|type=polypeptide|length=469bp
MASICQRWFALVLLLMTVAQAKQTICQGSNHLQQKFAYEPTLSFPSKNYP
HLAISYDTTSKVSKILAPSSNSAWKIVPGLCGQGFSFESTTQPNHFLRHR
NFLLFVDPFENTALYKNDACFKPVAGLADCNEVSFQSINYPDRFLRHQGY
RMKLHPNDGSSLFKNDATFNIQTICQGSNILQQKFAYEPTLSFPSKNYPH
LAISYDTTSKVSKILAPSSNSAWKIVPGLCGQGFSFESTTQPNHFLRHRN
FLLFVDPFENIALYKNDACFKPVAGLADCNEVSFQSINYPDRFLRHQGYQ
MKLHQNDGSSLFKNDATFNIQTICQGSDHLQQKFAYEPTLSFPSKNYPNL
AISYDTTSKVSKILAPSSNSAWKIVPGLCGQGFSFESTTQPNHFLRHRHL
LLFVDPFENTALYKNDACFKPVAGLADCNEVSFQSINYPDRFLRHQGYRM
KLHQNDGSSLFKNDATFNI Run BLAST on NCBI transcript from alignment at scaffold_44:201701..205094- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065511 ID=TCONS_00065511|Name=TCONS_00065511|organism=Clytia hemisphaerica|type=transcript|length=3394bp|location=Sequence derived from alignment at scaffold_44:201701..205094- (Clytia hemisphaerica)
AAAAGTTGGGAGAAATTTGATATTTGACACTTAAGATATTCTGTCTAGCG
AGTGGTTCATAGACAGTACAATGGCTTCAATTTGTCAACGTTGGTTTGCA
CTGGTTCTTTTGTTGATGACGGTGGCCCAAGCTAAGCGTAAGTCAGATTT
TATTCAGTTTCAAAAATTCATCACCCCTTTGCATTAACACGTAATCGCCA
ATAAACTTTTTAGCTTATTTTGAGTTGTCTTGTCACATCCCTTACTGTGC
AGTGGCCACAAACATATCATGCCATTTATTGAGGTATAAATATTATGCTT
TTTTCATACAATAATTCAGAATTCGTTTAAACCATGATTCAAATCATATT
TTAGAGACAATTTGTCAAGGCAGCAACCACCTACAACAGAAATTTGCATA
TGAACCTACACTTTCATTTCCATCAAAAAATTATCCACATCTTGCCATCA
GCTATGACACAACATCAAAAGTATCCAAAATACTGGCGCCATCATCAAAC
TCGGCTTGGAAGATAGTACCAGGGCTTTGTGGCCAAGGGTTCAGTTTTGA
ATCAACAACACAACCTAATCATTTCTTAAGACATCGAAACTTTCTCTTGT
TCGTGGATCCTTTTGAAAATACCGCCCTCTACAAAAACGACGCTTGCTTC
AAACCTGTTGCTGGTCTTGCCGATTGCAATGAAGTCTCGTTTCAATCGAT
CAACTATCCAGACCGTTTCTTGCGACATCAAGGCTATCGAATGAAACTCC
ATCCAAATGACGGCTCGTCTCTGTTCAAGAATGATGCAACATTTAATATT
CGTAAGATTTAAAATATTATTGCAATTTCATCACTGTGTTTCTTATTAGA
GCCCAAATCAGTCGGAAAAACATAATTCCAGGAATGAGTTAATAAGTTCT
TTTTTTGCAATATCAATGCATTATCATTTAAAATTTGCTCATATAATAAT
TCAAATCTTATTTCAGAGACAATTTGTCAAGGCAGCAACATTCTACAACA
GAAATTTGCATATGAACCTACACTTTCATTTCCATCAAAAAATTATCCAC
ATCTTGCCATCAGCTATGACACAACATCAAAAGTATCCAAAATACTGGCG
CCATCATCAAACTCGGCTTGGAAGATAGTACCAGGGCTTTGTGGCCAAGG
GTTCAGCTTTGAATCAACAACACAACCTAACCATTTCTTGAGACATAGAA
ACTTTCTCTTGTTCGTGGATCCCTTTGAAAATATCGCCCTCTACAAGAAT
GACGCTTGCTTCAAACCCGTCGCTGGTCTTGCCGATTGCAATGAAGTCTC
GTTTCAATCGATCAACTATCCAGACCGTTTCTTACGACATCAAGGCTATC
AAATGAAACTCCATCAAAATGACGGCTCTTCTTTGTTCAAGAATGATGCA
ACATTTAATATTCGTAAGATTTGAAATATTATTGCAGTTTCATCTTCATT
ATACACTTGCGGGCTGCTGAACTTACCAATGGTTCGGAATCGAGGGACTA
ATTCGCTAATACAGTGGACCTTTTTAATTCGAACTTCTTCTCAGGTCCCG
TCGCAAGGACAAACCTTCGTAAAATACTCTACCTATTATTGGAATCTCTC
CGCAATTCGAACAGATTGGACTTTCTTCTCAAACTCGAGTTATTGAGAGT
CCCTCAAGAGTTAACAATATTAACATAGTTATCCTGTATACCTCGACTGA
ATGAACATATATTTATCAACCAGGGTTCGGTAGTTTCGTAACCCCTGCCC
ATGTAAAGCAATTCAATCAGAAAACTAAAAGTTTGAAGCCCTTAGGGCCC
TTGGCATTTACACGCGAGCAGGTTTTACCACCAATCAAGTTAGCTTATAT
TTGTCAGGGCTAGCACGTTTATAGCCGAGCTCTTTTCAACAATTGAAAAT
TTGATCCCGTTGAATCTCATCGAATATTTGACTAAGTGGGCGGCATTTTC
AATTTTGCTTCAAATGCTCTAAAATTTTATACCAATGACGCAAGATTTTA
TGTAGTCTCCAAAATAAATACAATAAAAAAGTTTCTGTATCAAAGGTCAT
GGCCCTTAGAAGCCGGTATTTCAACCCCTCCACAAGTTTACTCGTATAGT
CGGCAGAGAACATGTTAGCGAGGCCTCGTGAAAAATATTTATGACCTGCT
TTCCATCATTAGACATGACTTGGAGTCGATTTGAACAGTTTGGGGGTTTT
TGAAATGTTTTTGGAGCCCTTTTAAAAGACAGGTTATGTGTATTGTAATT
CATATTCAAATCATATTTTAGAGACAATTTGTCAAGGCAGCGACCACCTA
CAACAGAAATTTGCATATGAACCTACACTTTCATTTCCATCAAAAAATTA
TCCAAATCTTGCCATCAGCTATGACACAACATCAAAAGTATCCAAAATAC
TGGCACCATCATCAAACTCGGCTTGGAAGATAGTGCCAGGGCTTTGCGGC
CAAGGGTTCAGCTTTGAATCAACAACTCAACCTAACCATTTCTTGAGACA
TCGACACCTTCTCTTGTTCGTGGATCCCTTTGAAAATACCGCCCTTTACA
AGAATGACGCTTGCTTCAAACCCGTCGCTGGTCTTGCCGATTGCAATGAA
GTCTCGTTTCAATCCATCAACTATCCAGACCGTTTCTTGCGACATCAAGG
CTATCGAATGAAACTCCATCAAAATGACGGCTCGTCTCTGTTCAAGAATG
ATGCAACGTTTAATATTTGAATTTCAAATTCTTTGGGATAAAGACTCTTC
TGTAACTTTTTGGACCTACCCCGGTGGAGGTCCTATAAATTAACCGTTGT
ATGTTCGTCCGTTCGTTAGTTACCAGCTTTTCTCGAGATTGGCTCATTAG
TTTTTTCTGATTTTTTGCACAAAGATGCATAACTATAAACCCTCGAATGT
GACGGAGCCTGATTTTCGAGAAAAAAATTTTTTAGGCAAATTTGGGCCAA
AAAATTGCTAAAAAACGGTTTTTTTGGACTTTGTGAAAAATTGGATTATT
AATTTTTTCTCATTTTTTCTATGAAAGTAGGGTACCATCATAGGTAAAAG
ATGGGTTAAGCAGATTTTTGCTAAAAAAATTTTTTGGCTCAAAAAATGCA
TGTTTATCTATAAGAATCACTATTAATAAGCATACATGTTCTTAGTCAAA
TTACTCAATTATTTTTATGAGATAGATGTATTTTTTGCTCATGAGGGCTT
ACTTTTGAAGAATATGTGTGTTTAGACATGAAATTTAGGCTGCTTGGTGT
GTTTTTATAGAAAAACTGGCCTAATTCGATATTTTTTTATAAGCAGGTTA
TCAATTACTTAGGTATTAGCTTTTCTCGAGGTTGGCGCTTTCATTCTTTA
TGATTTTTTGCACAAAGATGCATAGCTATAAACCCTCGAATGTT Coding sequence (CDS) from alignment at scaffold_44:201701..205094- >TCONS_00065511 ID=TCONS_00065511|Name=TCONS_00065511|organism=Clytia hemisphaerica|type=CDS|length=1410bp|location=Sequence derived from alignment at scaffold_44:201701..205094- (Clytia hemisphaerica)
ATGGCTTCAATTTGTCAACGTTGGTTTGCACTGGTTCTTTTGTTGATGAC
GGTGGCCCAAGCTAAGCAGACAATTTGTCAAGGCAGCAACCACCTACAAC
AGAAATTTGCATATGAACCTACACTTTCATTTCCATCAAAAAATTATCCA
CATCTTGCCATCAGCTATGACACAACATCAAAAGTATCCAAAATACTGGC
GCCATCATCAAACTCGGCTTGGAAGATAGTACCAGGGCTTTGTGGCCAAG
GGTTCAGTTTTGAATCAACAACACAACCTAATCATTTCTTAAGACATCGA
AACTTTCTCTTGTTCGTGGATCCTTTTGAAAATACCGCCCTCTACAAAAA
CGACGCTTGCTTCAAACCTGTTGCTGGTCTTGCCGATTGCAATGAAGTCT
CGTTTCAATCGATCAACTATCCAGACCGTTTCTTGCGACATCAAGGCTAT
CGAATGAAACTCCATCCAAATGACGGCTCGTCTCTGTTCAAGAATGATGC
AACATTTAATATTCAGACAATTTGTCAAGGCAGCAACATTCTACAACAGA
AATTTGCATATGAACCTACACTTTCATTTCCATCAAAAAATTATCCACAT
CTTGCCATCAGCTATGACACAACATCAAAAGTATCCAAAATACTGGCGCC
ATCATCAAACTCGGCTTGGAAGATAGTACCAGGGCTTTGTGGCCAAGGGT
TCAGCTTTGAATCAACAACACAACCTAACCATTTCTTGAGACATAGAAAC
TTTCTCTTGTTCGTGGATCCCTTTGAAAATATCGCCCTCTACAAGAATGA
CGCTTGCTTCAAACCCGTCGCTGGTCTTGCCGATTGCAATGAAGTCTCGT
TTCAATCGATCAACTATCCAGACCGTTTCTTACGACATCAAGGCTATCAA
ATGAAACTCCATCAAAATGACGGCTCTTCTTTGTTCAAGAATGATGCAAC
ATTTAATATTCAGACAATTTGTCAAGGCAGCGACCACCTACAACAGAAAT
TTGCATATGAACCTACACTTTCATTTCCATCAAAAAATTATCCAAATCTT
GCCATCAGCTATGACACAACATCAAAAGTATCCAAAATACTGGCACCATC
ATCAAACTCGGCTTGGAAGATAGTGCCAGGGCTTTGCGGCCAAGGGTTCA
GCTTTGAATCAACAACTCAACCTAACCATTTCTTGAGACATCGACACCTT
CTCTTGTTCGTGGATCCCTTTGAAAATACCGCCCTTTACAAGAATGACGC
TTGCTTCAAACCCGTCGCTGGTCTTGCCGATTGCAATGAAGTCTCGTTTC
AATCCATCAACTATCCAGACCGTTTCTTGCGACATCAAGGCTATCGAATG
AAACTCCATCAAAATGACGGCTCGTCTCTGTTCAAGAATGATGCAACGTT
TAATATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065511-exon-scaffold_44-1575043694:204958..205094 | TCONS_00065511-exon-scaffold_44-1575043694:204958..205094 | Clytia hemisphaerica | exon |
| TCONS_00065511-exon-scaffold_44-1575043694:204294..204740 | TCONS_00065511-exon-scaffold_44-1575043694:204294..204740 | Clytia hemisphaerica | exon |
| TCONS_00065511-exon-scaffold_44-1575043694:203682..204128 | TCONS_00065511-exon-scaffold_44-1575043694:203682..204128 | Clytia hemisphaerica | exon |
| TCONS_00065511-exon-scaffold_44-1575043694:201701..202823 | TCONS_00065511-exon-scaffold_44-1575043694:201701..202823 | Clytia hemisphaerica | exon |
| TCONS_00065511-exon-scaffold_44-1510915933:204958..205094 | TCONS_00065511-exon-scaffold_44-1510915933:204958..205094 | Clytia hemisphaerica | exon |
| TCONS_00065511-exon-scaffold_44-1510915933:204294..204740 | TCONS_00065511-exon-scaffold_44-1510915933:204294..204740 | Clytia hemisphaerica | exon |
| TCONS_00065511-exon-scaffold_44-1510915933:203682..204128 | TCONS_00065511-exon-scaffold_44-1510915933:203682..204128 | Clytia hemisphaerica | exon |
| TCONS_00065511-exon-scaffold_44-1510915933:201701..202823 | TCONS_00065511-exon-scaffold_44-1510915933:201701..202823 | Clytia hemisphaerica | exon |
| TCONS_00065511-exon-scaffold_44-1491911889:204958..205094 | TCONS_00065511-exon-scaffold_44-1491911889:204958..205094 | Clytia hemisphaerica | exon |
| TCONS_00065511-exon-scaffold_44-1491911889:204294..204740 | TCONS_00065511-exon-scaffold_44-1491911889:204294..204740 | Clytia hemisphaerica | exon |
| TCONS_00065511-exon-scaffold_44-1491911889:203682..204128 | TCONS_00065511-exon-scaffold_44-1491911889:203682..204128 | Clytia hemisphaerica | exon |
| TCONS_00065511-exon-scaffold_44-1491911889:201701..202823 | TCONS_00065511-exon-scaffold_44-1491911889:201701..202823 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_44 | supercontig | scaffold_44:201701..205094 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007934 | AbfB_ABD |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0046373 | L-arabinose metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046556 | alpha-L-arabinofuranosidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0046373 |
L-arabinose metabolic process |
| molecular_function |
GO:0046556 |
alpha-L-arabinofuranosidase activity |
Blast
The following BLAST results are available for this feature:
|
