TCONS_00065520 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065520
Unique NameTCONS_00065520
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065520 ID=TCONS_00065520|Name=TCONS_00065520|organism=Clytia hemisphaerica|type=transcript|length=2497bp
gcaaaaatgttagaaaagtATTTGAAGACAATATGGTGAAACGTTTCGAG
GGTTATAAATACGAGAAACTCTCAATAGCAACAGAAGAACAAAATGGAGT
TATAGATAAACAACCTAATGGTCAGAATCATACAGGTTTAAACTTTAGTC
TCGAATCAGTTGATGAACTATTAcacgaaaacaaagaaaatagcaaaggg
TTGTGGAgcaatctttttgattttttaacttGTGGTGCGTGCTGTAGAGT
GGAGGTTTACTACCCTCGATATGAACATTTTCAGAACTCAGTGACAAGCA
AACAGTATGAAGAATTAAAGAACGCATTCATTGCGTTTGATCGGAATTGC
GATGGATTCATCGATTCTGAAGATCTTGGATACGTCATGGGCAAACTTGG
TCATGATCTGTCATCTAAAGAAGTCAAAAAGGTTTTCAAAGATATCTGCA
AACACAGTAATGGCAAGATGGATTTCACAGATTTCGTAGAAATGATGGCA
CAAGATAAATTAGTTCTAACCACAAGCGAACAAGAGATCTTAGCAGCGTT
CCAATTTCTTGATCAAAATCATGATGGATATATCACCATAGATGAGTTAC
TACAACGTTTCCATGGCTGCCTGTCCGATACGGAAGCATCCCGGTTAATG
TGTGAAGCGGACGCTAATGGTGACGGAAAGATCGATTTCAACGAATTCAA
ACACATGATGTTTAATCAAGAACGAAGCATCTCATTGGCTCAATCTGAAG
TAGAATTATACTcatgagaaagaaagaaatctcATCCTTCGAAAATTTCA
CTACTCAAAGAAAAATCGTCCAAATCCACATTTTTGCTGGTCATGTTTAC
CATGGCAACGAATTCATATCATTCGCGCAAGGATTGACGACATCAATATG
GTACCCACAATGCTGTTCGGTGTCATTAGATGAAATACAGTACACCAGAG
ACAcaagaaaaacgaaaattagaacatttttttatagACATCAAAACTAA
TGAATATTGATAGGGAATAGTACAGAGATAACTTGACATAAAGCGCTTCA
TCCAATCAGGGGGAGTCCTGgaccttattttcaaatatgaCAATTTATAG
TATTCTAGTACCGTTACTCGAGAGGGAGATTTTAACCACCACAAAAATGT
ACTTTTTCGGTCTTCCAGTTGTACCCACAACTTTTTGTGATATTCTTACT
TTGAACAGAAAGATTTTGGTACTGTTATGGTGAAATTTACCCCTCTTAAG
TAGCGGTACTAAATATTTTGGGAAGNATTGTTATGGTGAAATCCCTCCTA
AGTAGCGGTGCTAAGTATTTTGGTAAACATTATCTAATCGTCGTTGCCAT
TGATgcaaaaggtccaatctcaaaattagtgtcTGAGAAAACTCAGGTTT
ATTTTGCTTTGGAGGTTAGCCCTTTTTCTTGTAAGGATCATATCTACACA
CTAATTATATTATACTAAGTCAGATTAGACCTTTTGCCTTGATGACAGCG
ctttcttgatattcatgacgtaatcttttgtacggaaacacccgaaaaac
acCGGGCGTTTGCTATCAGTTTTGAATTTATATAACTAAACTGGTGGTAA
ACGCCCGgtgtttttcgggtgtttccgtataaaattTTACGTCGTGAATA
TCAAGAATAATGTAAGGCGTCCTTGATAATCAAGAGATAGAACAGGTAGA
TACAaaagttattttacattttttactaGAATCCTAGCAAGTATAATTGT
AGTAaactttttgtacaaaaatgttcctttttaccacattctactttttt
gtttGTGGTGATCGCAATATTGTAGGTCATCAAATGtaaaatttctttac
aatatAATGTACATAAAAAGTTATGGATTAAAAAACATTATGTTCCCATA
tttgttaaaaacaaaaatcgTCTACGGagtaaaaatttaagaaatcaTTT
TGCAGGGATTTTTGAGTTCGTGTTTCGACTGgctaacttaaaaaaaaact
taaaacgtTTTTACGCAACTAACGGAGGTACAAAGAGTTTCGAATATTCA
AACAAGTAGGTCCAAGCTTTAAGAATATAAGGTTTTAAAACTAGAACCAA
ATCTTATATTAACGAGAATTGTTTCGAAATTTTATATCTCGACAAATGTG
GGTCCAATACATACGTGATCTTTTTTCGTTAGACTcgaaaacaaaatttc
gagaatcCTTTAGCggtaaaatttaccaaaaatttAACTCCTTTTGAAAT
GGCCGGTATTTGGTCTTTTCCATTCTTCCTTACCATCATTTCCAAGACTT
GGCGAAGTGGCAACCATGCTTTCAATGGCCGGTCAGTATAAGCACTTTGA
TTGGATGATGATTTTGGCAACAGTTTGGATGGCAAGCGCCGATCAATCAA
TTGACAGCTGAAACATTCTCCGCGTAACGTCACCACATGAACATTATCAT
TTCTTCAAAGTGTTGCTATGACGAAACCgtaaaaataataaagtaaC
Run BLAST on NCBI

transcript from alignment at scaffold_44:332001..340017-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065520 ID=TCONS_00065520|Name=TCONS_00065520|organism=Clytia hemisphaerica|type=transcript|length=8017bp|location=Sequence derived from alignment at scaffold_44:332001..340017- (Clytia hemisphaerica)
GCAAAAATGTTAGAAAAGTATTTGAAGACAATATGGTGAAACGTTTCGAG
GGTTATAAATACGAGAAACTCTCAATAGCAACAGAAGAACAAAATGGAGT
TATAGATAAACAACCTAATGGTCAGAATCATACAGGTTTAAACTTTAGTC
TCGAATCAGTTGATGAACTATTACACGAAAACAAAGAAAATAGCAAAGGG
TTGTGGAGCAATCTTTTTGATTTTTTAACTTGTGGTGCGTGCTGTAGAGT
GGAGGTTTACTACCCTCGATATGAACATTTTCAGGTAAAAACACTTCAAA
CTTCTTTATATCAGAACTGACAAAGCTCAGCTGTAACCTCAGTTAGGGAA
AAGTTCTCCAAAGGCTTTATACCACCGATATTTTGTATTTTGCCCTTTCT
TACTGAAATAAATAAACTCAATCTCAGACTGAGACTTGCGAAGTCTTGAA
CTTTTTCAATTTGTGATAAAAATGATAACATCGAGTCTCATTGCTATCAT
AAAAGAGTATATGATTGTTAAGTAACAATACCTAAAGCTACTTTTACGCA
TGACTCAATGATATCAAGGTTAACACCATCTACATAAGGTAATAGGGACC
ACTCCCTGTGAGTATAAACAAAAAGTTTTAAGCTTTACATTAGGAAGTCA
CATTAAAGGTGAAAACTAATTTTGGTGTGTCAAATATCAAAATTGTATCT
TGAAATTGCCATTAGATGGACAAAATACACGCTTTTTTTATAAGAATGGT
GTTTTTTCAATTCATCATAAATATTCTTAACTTTTTTAGGAAAATTGAAA
TTGAATGATAGTTGAAAATTCAGTTGAAATTCCATGATAGTGGTATTCTT
TCCTTATCCTTAATTTTTTTTGCTAATTTCATCATAAATATTCTTATAAA
AAAAGGTTGTACGAGGAAAAGAAGGAAATTTTTCGATAAAACGTTCTTCT
TAGCCACGTTTTTTGATGTTTGATGAATTACTATGAGGTTTTTCTTCTCT
TGTTTGATCAACTTTATCAACAACGCGTCTTTACTGAAAGGTGGACTGGA
AACAAGGTTACACACCAAGAACACGAGATGGAAATCAAGGGAGCATCGGT
TTTCGCACCTATAGAATTTCCCGCCAAAATTAGAAAACAAACGCTGACAT
TGCACAAAAAAAAGTTCTTGTGCGCATGCGCTTAAGGCAGAAGACAGAAT
TCGCGATATCTCATATTTCGTTTTCGTAACATACACGTTTTTTTATAAGA
AACAACTATATAAGAACACAAGGCTTCGATGGCCGAAATGTTAAGAACAA
GTTAAGAACATTTTAAGCCTTTGCCGACTCTAAAACAGCCGAAACTCAAA
AATTTAAGAACATCTGAAGGCTTCAAAAATTTTGGACGTTCTTATAAAAA
AAATGTGTACCCTCTGACAAAATGTAACAAGATTTCGTCACATCAGTATT
TTACAGAAGGTGAAACAAAACTGTCCCAAATAGTCCCGACTTATCCCCTA
AAATGTATTAAACAAACAGAGAGCGATAGAAAACAAATGTAAAAGATAGA
GGTCATATAAAAAAGTCAAAGAATAATAATCGATAAGAAATATAGGTCCA
ACAAGCAAAAATCTTGAGAACTCTGACTCGAATGTAGGACCTGCTATAAG
GAGATACATATTCATCTACGGATGAATTTTTCTGATCTGATTTAAGCCAA
TTTCACTTGACATTTAGATTTAGACAAAGAAATGACAATATTAAAACTTT
TAAAGTGATAAAATTTGGTTTAAAAAAAGTTTCTATTTTTGTTGCTTATA
AAAAATGTCAAATCTCAGTGTTAAAAATAGATGACTTCTTTAAAATAGTC
GGAAAAAATATTAAAATCAAAACAAAGATAAATAAAATGCTGGAATGTGT
AAAAGCNTGTGAGTATAAACAAAAAGTTTTAAGCTTTACATTAGGAAGTC
ACATTAAAGGTGAAAACTAATTTTGGTGTGTCAAATATCAAAATTGTATC
TTGAAATTGCCATTAGATGGACAAAATACACGCTTTTTTTATAAGAATGG
TGTTTTTTCAATTCATCATAAATATTCTTAACTTTTTTAGGAAAATTGAA
ATTGAATGATAGTTGAAAATTCAGTTGAAATTCCATGATAGTGGTATTCT
TTCCTTATCCTTAATTTTTTTTGCTAATTTCATCATAAATATTCTTATAA
AAAAAGGTTGTACGAGGAAAAGAAGGAAATTTTTCGATAAAACGTTCTTC
TTAGCCACGTTTTTTGATGTTTGATGAATTACTATGAGGTTTTTCTTCTC
TTGTTTGATCAACTTTATCAACAACGCGTCTTTACTGAAAGGTGGACTGG
AAACAAGGTTACACACCAAGAACACGAGATGGAAATCAAGGGAGCATCGG
TTTTCGCACCTATAGAATTTCCCGCCAAAATTAGAAAACAAACGCTGACA
TTGCACAAAAAAAAGTTCTTGTGCGCATGCGCTTAAGGCAGAAGACAGAA
TTCGCGATATCTCATATTTCGTTTTCGTAACATACACGTTTTTTTATAAG
AAACAACTATATAAGAACGCAAGGCTTCGATGGCCGAAATGTTAAGAACA
AGTTAAGAACATTTTAAGCCTTTGCCGACTCTAAAACAGCCGAAACTCAA
AAATTTAAGAACATCTGAAGGCTTCAAAAATTTTGGACGTTCTTATAAAA
AAAATGTGTACCCTCTGACAAAATGTAACAAGATTTCGTCACATCAGTAT
TTTACAGAAGGTGAAACAAAACTGTCCCAAATAGTCCCGACTTATCCCCT
AAAATGTATTAAACAAACAGAGAGCGATAGAAAACAAATGTAAAAGATAG
AGGTCATATAAAAAAGTCAAAGAATAATAATCGATAAGAAATATAGGTCC
AACAAGCAAAAATCTTGAGAACTCTGACTCGAATGTAGGACCTGCTATAA
GGAGATACATATTCATCTACGGATGAATTTTTCTGATCTGATTTAAGCCA
ATTTCACTTGACATTTAGATTTAGACAAAGAAATGACAATATTAAAACTT
TTAAAGTGATAAACTTTGGTTTAAAAAAAGTTTCTATTTTTGTTGCTTAT
AAAAAATGTCAAATCTCAGTGTTAAAAATAGATGACTTTTTTAAAAAAGT
CGGAAAAAATATTAAAATCAAAACAAAGATAAATAAAATGCTGGAATGTG
TAAAAGCTAAATGGTGTTGCAGGCTAATTGCACCATTTTCGTGTTTTCAT
AGCAAATCCTACATTCATCAAAACGTCAACAGACATTTTAGCAGCTTTTA
TAATTGGACTCCGGGAGAGTCCATTATTTATAAAGTGTTTTATAATCAGA
TCAGATTTGACAAAACGTTATCGTTATTTGGGGGTGAGGACATTATGCTA
NATCAGAGTTGACAAAACGTTATCGTTATTTGGGGGTGAGGACATTATGC
TATAAGATTTCAAAGTGATAAGACCTTCACTCCAGGAGATTTAATAGTAT
ACAGTGTATTATTATGTTAAAAATTTGAGCTTGAATTTTGCTTCAATTTT
ATACCTACACGTGCTTAAGAGACTGTAGTGTTGAAAAGGGTTTTCACTGA
CAAAACTTAATTTCGAGATGGTTAACCCAGCAGTATTTAACAGTAACTTT
GGTGAATGGAAAAAGAGAACGAAAAAAGATCGTTACATGATTTTACCACA
GGATTTGACTTTGTTGAAATTGGTGAATTTTGAGGACTTTGTTGTCATGG
ATGTCATTGATAATATAGATTTTGGCAAAAAGGTAGAATAGATCCGCCCT
TTTGGTATTTTACCAAAGAAAATATCTAAGCCACCTTAGCTTTCCTGTAT
CATACTGTATGACAGAAGAAAGCTCTGAAAAAGCAGCAGAAATTTTAAAC
CTTATTTCCCTTTATTTTTCAGAACTCAGTGACAAGCAAACAGTATGAAG
GTAAGAAAAACTATTCAGTACAAAACCCTATAGTCGATAATGAAGTGATT
GGCATGCAACTACGCGATTGATTGAAATCTTATTTTGATATCATCCAAAG
ATTTAAGCAGAATATAGACTTGAAAGCATGAATTCAAAATTATAATTTGG
GCCCAACATTGATGTCTCTTACCCCGATTATTTCGCTGCATGAATTTATC
TTGACAACATCCATTTTCTTTCCTCTTTTCAGAATTAAAGAACGCATTCA
TTGCGTTTGATCGGAATTGCGATGGATTCATCGATTCTGAAGATCTTGGA
TACGTCATGGGCAAACTTGGTCATGATCTGTCATCTAAAGAAGTCAAAAA
GGTTTTCAAAGATATCTGCAAACACAGTACGTAAAACTAAGTATTACTTT
CAGCCTTGGCTTAACTAGACTGAGTTTTCTTCGACTGATCATAAAGCCAT
AAACCAATATTTGGGATTATCTTTATTAGGGGCCTCTGCTAATCCTCAAT
CCTCAAAAATGTTCTTACAGAAAGTATGGAGGTATGTGAATCTTTCGCCT
TTTAGTCATTCGCTTAATTAATTTCCTTGATAAGTTGGTGAGGTTTTAGC
TTGTAAGGGAGATGATGTTTCTATACGCGAACTGAAGTGATGCTTTAGAT
AAGATAAGATCCAAGAGTGGAATTGAGTAGATTTTGAAGGATTTCGGTAA
ACAAATGTTTCCTTGTTTGAACAAAAACCCAGGAGGAAAAAGGTGTGTCC
AATTTTCCCTTATTTCATCATGATTTTTGACAAGTAAGTATAAATAAGGG
AATAGTTGGAAAATCTCGTGCTATTCTATTCATAAATCAAAAAACTACCT
TTCCGTGTTTCTCAAACGAATTTCGATAATTAGGTTCACTAATAGGCTCA
GATTATTAAGAAATGACTTGTAGCTTGTATGATAATTCGAAAAGCTAATA
ATCGAAAGGAATTTCTATTACTTCGTTTTAAAGTGGAGATTTTCTTTTGT
TTAAATAAGTCTTAATGAAGACAGCTTGAGAATGCTTTACAATGGTTTGC
GTCCTGACGCACAGAGGCACTTTATCGACTTAAAATCGAAATGAAAAGTG
ATTATCATTTGCAATGGTGACGTTTAGACTCAAAGGTAGCTTTGCCAGTC
CTCGGATATTGCTAGCGTTTCACGTTTCAAGCCTAAAAATGTTCTTTTTT
CATCATTTTGTGAGGATTCCTGTGCATTTCCTAAGAAATTGGTTGTTGAA
GAGTCTACAAAGTCTTAAAATGTTCTTAAAATGTTCTTAACATATTCACC
ATCGAAGCATTATGTTCTTAGATAGCTTGTTCTTATATAAAAAACGTTCA
ACACGTTAAAACAGCATCCATTAAACATCCCCACGGCGTTTAATTAGGAC
TTATGGATTGCTAGTTTTCGACTACAAATGGACCATCGAGATTTCTCTAG
CCAATTTAAGGTTGATACCTAAGACCCCCTATCTCAACTCCAGGCGAGAA
AGTCGAAACAGACAAACCCTTTTTGTCTGTTGAAAATACAAAAACTGACC
TAAAATCATTTAAAATCAATAAAAGATGAAATTAAAAAAAAAATTCATAC
CATAGTTTGACCAAATGATATTTTCTCCTAACATAGGTAATGGCAAGATG
GATTTCACAGATTTCGTAGAAATGATGGCACAAGATAAATTAGTTCTAAC
CACAAGCGAACAAGAGATCTTAGCAGCGTTCCAATTTCTTGATCAAAATC
ATGATGGATATATCACCATAGATGAGTTACTACAACGTTTCCATGGCTGC
CTGTCCGATACGGAAGCATCCCGGTTAATGTGTGAAGCGGACGCTAATGG
TGACGGAAAGATCGATTTCAACGGTGAGTGATTGGTTCAGCCATTTTATT
GGAAGATTTTAGTATGGTTATTATTAAAGTCACCATTTCATTAGTTTTAT
TCTTTGAGTTAATTTTTCATTAGTCATCTAAAGAGGGACATAAAGATTAT
TTGAGGATAAGAAATGTGTTAGTAAATTGAAAGCAATGACGGGGCAAATC
AAGTATTCATGATATGCACCAATGCAATGTTGCAACTTTTCTGTTTTTGT
TCCACCCAAGACGTCACTTTTTCTATTTTTTAAGTGACGTATTGGATGGA
AAATTTTAAAAATTCTCAAAGACTCTCCAGTGATGGTGCATATCATGAAT
ATAACAGTGTAATTTTCGACAAAGAAAGCTAAATTTTCAACCCTTTTGAA
TTTTGTTTTCCAGAATTCAAACACATGATGTTTAATCAAGAACGAAGCAT
CTCATTGGCTCAATCTGAAGTAGAATTATACTCATGAGAAAGAAAGAAAT
CTCATCCTTCGAAAATTTCACTACTCAAAGAAAAATCGTCCAAATCCACA
TTTTTGCTGGTCATGTTTACCATGGCAACGAATTCATATCATTCGCGCAA
GGATTGACGACATCAATATGGTACCCACAATGCTGTTCGGTGTCATTAGA
TGAAATACAGTACACCAGAGACACAAGAAAAACGAAAATTAGAACATTTT
TTTATAGACATCAAAACTAATGAATATTGATAGGGAATAGTACAGAGATA
ACTTGACATAAAGCGCTTCATCCAATCAGGGGGAGTCCTGGACCTTATTT
TCAAATATGACAATTTATAGTATTCTAGTACCGTTACTCGAGAGGGAGAT
TTTAACCACCACAAAAATGTACTTTTTCGGTCTTCCAGTTGTACCCACAA
CTTTTTGTGATATTCTTACTTTGAACAGAAAGATTTTGGTACTGTTATGG
TGAAATTTACCCCTCTTAAGTAGCGGTACTAAATATTTTGGGAAGNATTG
TTATGGTGAAATCCCTCCTAAGTAGCGGTGCTAAGTATTTTGGTAAACAT
TATCTAATCGTCGTTGCCATTGATGCAAAAGGTCCAATCTCAAAATTAGT
GTCTGAGAAAACTCAGGTTTATTTTGCTTTGGAGGTTAGCCCTTTTTCTT
GTAAGGATCATATCTACACACTAATTATATTATACTAAGTCAGATTAGAC
CTTTTGCCTTGATGACAGCGCTTTCTTGATATTCATGACGTAATCTTTTG
TACGGAAACACCCGAAAAACACCGGGCGTTTGCTATCAGTTTTGAATTTA
TATAACTAAACTGGTGGTAAACGCCCGGTGTTTTTCGGGTGTTTCCGTAT
AAAATTTTACGTCGTGAATATCAAGAATAATGTAAGGCGTCCTTGATAAT
CAAGAGATAGAACAGGTAGATACAAAAGTTATTTTACATTTTTTACTAGA
ATCCTAGCAAGTATAATTGTAGTAAACTTTTTGTACAAAAATGTTCCTTT
TTACCACATTCTACTTTTTTGTTTGTGGTGATCGCAATATTGTAGGTCAT
CAAATGTAAAATTTCTTTACAATATAATGTACATAAAAAGTTATGGATTA
AAAAACATTATGTTCCCATATTTGTTAAAAACAAAAATCGTCTACGGAGT
AAAAATTTAAGAAATCATTTTGCAGGGATTTTTGAGTTCGTGTTTCGACT
GGCTAACTTAAAAAAAAACTTAAAACGTTTTTACGCAACTAACGGAGGTA
CAAAGAGTTTCGAATATTCAAACAAGTAGGTCCAAGCTTTAAGAATATAA
GGTTTTAAAACTAGAACCAAATCTTATATTAACGAGAATTGTTTCGAAAT
TTTATATCTCGACAAATGTGGGTCCAATACATACGTGATCTTTTTTCGTT
AGACTCGAAAACAAAATTTCGAGAATCCTTTAGCGGTAAAATTTACCAAA
AATTTAACTCCTTTTGAAATGGCCGGTATTTGGTCTTTTCCATTCTTCCT
TACCATCATTTCCAAGACTTGGCGAAGTGGCAACCATGCTTTCAATGGCC
GGTCAGTATAAGCACTTTGATTGGATGATGATTTTGGCAACAGTTTGGAT
GGCAAGCGCCGATCAATCAATTGACAGCTGAAACATTCTCCGCGTAACGT
CACCACATGAACATTATCATTTCTTCAAAGTGTTGCTATGACGAAACCGT
AAAAATAATAAAGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041059XLOC_041059Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065520-exon-scaffold_44-1575043694:339734..340017TCONS_00065520-exon-scaffold_44-1575043694:339734..340017Clytia hemisphaericaexon
TCONS_00065520-exon-scaffold_44-1575043694:336068..336095TCONS_00065520-exon-scaffold_44-1575043694:336068..336095Clytia hemisphaericaexon
TCONS_00065520-exon-scaffold_44-1575043694:335692..335835TCONS_00065520-exon-scaffold_44-1575043694:335692..335835Clytia hemisphaericaexon
TCONS_00065520-exon-scaffold_44-1575043694:334195..334431TCONS_00065520-exon-scaffold_44-1575043694:334195..334431Clytia hemisphaericaexon
TCONS_00065520-exon-scaffold_44-1575043694:332001..333804TCONS_00065520-exon-scaffold_44-1575043694:332001..333804Clytia hemisphaericaexon
TCONS_00065520-exon-scaffold_44-1510915933:339734..340017TCONS_00065520-exon-scaffold_44-1510915933:339734..340017Clytia hemisphaericaexon
TCONS_00065520-exon-scaffold_44-1510915933:336068..336095TCONS_00065520-exon-scaffold_44-1510915933:336068..336095Clytia hemisphaericaexon
TCONS_00065520-exon-scaffold_44-1510915933:335692..335835TCONS_00065520-exon-scaffold_44-1510915933:335692..335835Clytia hemisphaericaexon
TCONS_00065520-exon-scaffold_44-1510915933:334195..334431TCONS_00065520-exon-scaffold_44-1510915933:334195..334431Clytia hemisphaericaexon
TCONS_00065520-exon-scaffold_44-1510915933:332001..333804TCONS_00065520-exon-scaffold_44-1510915933:332001..333804Clytia hemisphaericaexon
TCONS_00065520-exon-scaffold_44-1491911889:339734..340017TCONS_00065520-exon-scaffold_44-1491911889:339734..340017Clytia hemisphaericaexon
TCONS_00065520-exon-scaffold_44-1491911889:336068..336095TCONS_00065520-exon-scaffold_44-1491911889:336068..336095Clytia hemisphaericaexon
TCONS_00065520-exon-scaffold_44-1491911889:335692..335835TCONS_00065520-exon-scaffold_44-1491911889:335692..335835Clytia hemisphaericaexon
TCONS_00065520-exon-scaffold_44-1491911889:334195..334431TCONS_00065520-exon-scaffold_44-1491911889:334195..334431Clytia hemisphaericaexon
TCONS_00065520-exon-scaffold_44-1491911889:332001..333804TCONS_00065520-exon-scaffold_44-1491911889:332001..333804Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:332001..340017 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0363158	0	0	0.403424	0	0.653053	0	0	0	0.340898	0.0127122	0	0	0	0.107391	1.48403	6.77884e-09	5.39237	0	0	0	3.59858e-08	0	0	0	0	0.65387	0.612382
Blast
[Close]
BLAST of TCONS_00065520 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.753e-23
Identity = 53/145 (36.55%), Postives = 88/145 (60.69%), Query Frame = 3 
Query:  285 NSVTSKQYEELKNAFIAFDRNCDGFIDSEDLGYVMGKLGHDLSSKEVKKVFKDICKHSNGKMDFTDFVEMMAQDKLVLTTSEQEILAAFQFLDQNHDGYITIDEL---LQRFHGCLSDTEASRLMCEADANGDGKIDFNEFKHMM 710
            + +T +Q  E K AF  FD++ DG I +++LG VM  LG + +  E++ +  ++    NG +DF +F+ MMA+ K+  T SE+EI  AF+  D++ +GYI+  EL   +      L+D E   ++ EAD +GDG++++ EF  MM
Sbjct:    3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR-KMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
The following BLAST results are available for this feature:
BLAST of TCONS_00065520 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM35.753e-2336.55Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
back to top