TCONS_00065530 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065530
Unique NameTCONS_00065530
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length739

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065530 ID=TCONS_00065530|Name=TCONS_00065530|organism=Clytia hemisphaerica|type=transcript|length=739bp
TTACCGATGCAACATGGACCATTAAACCTATTGGATTGGATTTCATCTCA
AGGACTGGACAAGATATACTGATGCAACATGGGATATTGAACCTGTTGGA
TTGGATTTCATCTCAAGGACTGGACAAATTACTGATGCAACATGGATCAT
TAAACCTATTGGATTGGATTTCATTTCAAGGACTGGACAAGATATACAGA
TGCAACATGGAATATTGAACCTGTTGGATTGAATTTCATTTCAAGGACTG
AACAAATTACTGATGCAACATGGATCATTAAACCTATTGGATTGGATTTC
ATTTCAAGGACTGGACAAGATATACTGATGCAACATGGGATATTGAACCT
GTTGGATTGGACTTCATCTCAAGGATTGGACAAATTACTGATGCAACATG
GATCATTAAACATATTGGATTGGATTTCATCTCAAGGACTGGACAAGATA
TACTGATGCAACATGGATCATTAAACCTATTGGATTGGATTTCATTTCAA
GGACTGGACAAGTTATACTGATGCAACATGGATAATTTGACCTATTGGAT
TGGGTTTCATTTCAAGGACTGGAAAAATTACTGATGCAACATAAATCATT
AAACCTTTTGGTTTGGGTTTCATTTCAAGGACTAGACAAGTTACTGATGC
ACCACTTTTTTATTATAAATGGTATTTTTAGTTACTGATGCAACATGGAA
TATTGAACCTATTGAATTAGATTTCATCTCAAGAACTGG
Run BLAST on NCBI

transcript from alignment at scaffold_44:10824..11562

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065530 ID=TCONS_00065530|Name=TCONS_00065530|organism=Clytia hemisphaerica|type=transcript|length=739bp|location=Sequence derived from alignment at scaffold_44:10824..11562 (Clytia hemisphaerica)
CCAGTTCTTGAGATGAAATCTAATTCAATAGGTTCAATATTCCATGTTGC
ATCAGTAACTAAAAATACCATTTATAATAAAAAAGTGGTGCATCAGTAAC
TTGTCTAGTCCTTGAAATGAAACCCAAACCAAAAGGTTTAATGATTTATG
TTGCATCAGTAATTTTTCCAGTCCTTGAAATGAAACCCAATCCAATAGGT
CAAATTATCCATGTTGCATCAGTATAACTTGTCCAGTCCTTGAAATGAAA
TCCAATCCAATAGGTTTAATGATCCATGTTGCATCAGTATATCTTGTCCA
GTCCTTGAGATGAAATCCAATCCAATATGTTTAATGATCCATGTTGCATC
AGTAATTTGTCCAATCCTTGAGATGAAGTCCAATCCAACAGGTTCAATAT
CCCATGTTGCATCAGTATATCTTGTCCAGTCCTTGAAATGAAATCCAATC
CAATAGGTTTAATGATCCATGTTGCATCAGTAATTTGTTCAGTCCTTGAA
ATGAAATTCAATCCAACAGGTTCAATATTCCATGTTGCATCTGTATATCT
TGTCCAGTCCTTGAAATGAAATCCAATCCAATAGGTTTAATGATCCATGT
TGCATCAGTAATTTGTCCAGTCCTTGAGATGAAATCCAATCCAACAGGTT
CAATATCCCATGTTGCATCAGTATATCTTGTCCAGTCCTTGAGATGAAAT
CCAATCCAATAGGTTTAATGGTCCATGTTGCATCGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041061XLOC_041061Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065530-exon-scaffold_44-1491911889:10824..11562TCONS_00065530-exon-scaffold_44-1491911889:10824..11562Clytia hemisphaericaexon
TCONS_00065530-exon-scaffold_44-1510915933:10824..11562TCONS_00065530-exon-scaffold_44-1510915933:10824..11562Clytia hemisphaericaexon
TCONS_00065530-exon-scaffold_44-1575043694:10824..11562TCONS_00065530-exon-scaffold_44-1575043694:10824..11562Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:10824..11562 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.535513	0.913867	0.454752	0.593204	0.631898	0.142667	0.258182	0.241707	0.112817	0	0	0	0.0445191	0	0	0	0.150753	0.103011	0	0	0.323603	0.284116	0	0.139556	1.43739	1.41112	0	0.0979574	0.0742972	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065530 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top