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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065533 ID=TCONS_00065533|Name=TCONS_00065533|organism=Clytia hemisphaerica|type=transcript|length=1128bp
CTCACACATCAACAATTCACGCCGAACTAATGATCCAAGAAACTATCAAT
TATTATAACAACAACGGCTCATCTGTATACCTATGTAGTTTAGACGCAAC
AAAAGCTTTTGACAGCTGTAATTGGCATGTTATGTTTCAAAAACTGTTAG
ACAAAGGTATCTCGAGATCAGTAGTCCAGTACCTAATATCATCTTACCTT
CAGAGTGAATCTACCGTAATGTATAATGGATGTAAATCACAACCATTTGC
CCTATCTCAAGGAGTCAAACAAGGATCTCTGCTCTCCCCGTATCTGTACA
ATATTTACACCGAAAATCTATTAGAAACTTTGAAAGAATCACATACAGGA
ACACGCCTACCGGACGGAACCAACACATCAGTCATTGCATTTGCTGACGA
CCTCATCCTTATGAGCCCAACCTTACATGGATTGCAGTCTCTCATCAACA
AATGTTCAGCTTACGGTCAAATTCACAACATCAGTTTCAATCACCTGAAA
ACTCAATTTGTGGTATCTGGAAAGTCACATTTTCAAAACCCTGTTCTTGT
GCTTGATAGGGAATTTGTTTTGTCTCAGGATACAATGAAACATCTTGGGT
TTATCTGGAAAAAGAACTTTAGTAAACTTCAACTTAAAAATCATATGGAG
TATCGTTTAAATGAAATGTGGTCAGTAACatcatctttgatttcatcGGG
AGTGCGCCACTTACACCCAAACCAAATCATCACGCTTTACAGATCTATTG
TCATACCAAAGTTATTGTATGGCCTGGAAATAATCAATATCACCCACACT
GAAAAACAATACCTTAATACGCAAGCAAGATGTGCATTAAAACACTTGTT
TGGGGTATCGAAACACGCAAAGAACCTGTTGAGCTTGTATTACAGACTCC
CAGACATTACAACACTACTGGACAATCGAAAACTAAATTTCATCCATCAA
CTATCACAAAACAAGGACACGTTAAAGTACACACTTCATCTCATCTCCCT
CTCAAACAAGGATCGCAGATACTCAattctaaaaaacttttatgaTACGT
GCATGGCATATGATAAAGTATTTGTTAACTGTTTTCTTGATCGTCAAACA
ACAACATCAATCTCCCCTGTAACTCATG Run BLAST on NCBI protein sequence of TCONS_00065533-protein >TCONS_00065533-protein ID=TCONS_00065533-protein|Name=TCONS_00065533-protein|organism=Clytia hemisphaerica|type=polypeptide|length=375bp
HTSTIHAELMIQETINYYNNNGSSVYLCSLDATKAFDSCNWHVMFQKLLD
KGISRSVVQYLISSYLQSESTVMYNGCKSQPFALSQGVKQGSLLSPYLYN
IYTENLLETLKESHTGTRLPDGTNTSVIAFADDLILMSPTLHGLQSLINK
CSAYGQIHNISFNHLKTQFVVSGKSHFQNPVLVLDREFVLSQDTMKHLGF
IWKKNFSKLQLKNHMEYRLNEMWSVTSSLISSGVRHLHPNQIITLYRSIV
IPKLLYGLEIINITHTEKQYLNTQARCALKHLFGVSKHAKNLLSLYYRLP
DITTLLDNRKLNFIHQLSQNKDTLKYTLHLISLSNKDRRYSILKNFYDTC
MAYDKVFVNCFLDRQTTTSISPVTH Run BLAST on NCBI transcript from alignment at scaffold_44:31375..32502 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065533 ID=TCONS_00065533|Name=TCONS_00065533|organism=Clytia hemisphaerica|type=transcript|length=1128bp|location=Sequence derived from alignment at scaffold_44:31375..32502 (Clytia hemisphaerica)
CATGAGTTACAGGGGAGATTGATGTTGTTGTTTGACGATCAAGAAAACAG
TTAACAAATACTTTATCATATGCCATGCACGTAtcataaaagttttttag
aatTGAGTATCTGCGATCCTTGTTTGAGAGGGAGATGAGATGAAGTGTGT
ACTTTAACGTGTCCTTGTTTTGTGATAGTTGATGGATGAAATTTAGTTTT
CGATTGTCCAGTAGTGTTGTAATGTCTGGGAGTCTGTAATACAAGCTCAA
CAGGTTCTTTGCGTGTTTCGATACCCCAAACAAGTGTTTTAATGCACATC
TTGCTTGCGTATTAAGGTATTGTTTTTCAGTGTGGGTGATATTGATTATT
TCCAGGCCATACAATAACTTTGGTATGACAATAGATCTGTAAAGCGTGAT
GATTTGGTTTGGGTGTAAGTGGCGCACTCCCgatgaaatcaaagatgatG
TTACTGACCACATTTCATTTAAACGATACTCCATATGATTTTTAAGTTGA
AGTTTACTAAAGTTCTTTTTCCAGATAAACCCAAGATGTTTCATTGTATC
CTGAGACAAAACAAATTCCCTATCAAGCACAAGAACAGGGTTTTGAAAAT
GTGACTTTCCAGATACCACAAATTGAGTTTTCAGGTGATTGAAACTGATG
TTGTGAATTTGACCGTAAGCTGAACATTTGTTGATGAGAGACTGCAATCC
ATGTAAGGTTGGGCTCATAAGGATGAGGTCGTCAGCAAATGCAATGACTG
ATGTGTTGGTTCCGTCCGGTAGGCGTGTTCCTGTATGTGATTCTTTCAAA
GTTTCTAATAGATTTTCGGTGTAAATATTGTACAGATACGGGGAGAGCAG
AGATCCTTGTTTGACTCCTTGAGATAGGGCAAATGGTTGTGATTTACATC
CATTATACATTACGGTAGATTCACTCTGAAGGTAAGATGATATTAGGTAC
TGGACTACTGATCTCGAGATACCTTTGTCTAACAGTTTTTGAAACATAAC
ATGCCAATTACAGCTGTCAAAAGCTTTTGTTGCGTCTAAACTACATAGGT
ATACAGATGAGCCGTTGTTGTTATAATAATTGATAGTTTCTTGGATCATT
AGTTCGGCGTGAATTGTTGATGTGTGAG Coding sequence (CDS) from alignment at scaffold_44:31375..32502 >TCONS_00065533 ID=TCONS_00065533|Name=TCONS_00065533|organism=Clytia hemisphaerica|type=CDS|length=1125bp|location=Sequence derived from alignment at scaffold_44:31375..32502 (Clytia hemisphaerica)
ATGAGTTACAGGGGAGATTGATGTTGTTGTTTGACGATCAAGAAAACAGT
TAACAAATACTTTATCATATGCCATGCACGTAtcataaaagttttttaga
atTGAGTATCTGCGATCCTTGTTTGAGAGGGAGATGAGATGAAGTGTGTA
CTTTAACGTGTCCTTGTTTTGTGATAGTTGATGGATGAAATTTAGTTTTC
GATTGTCCAGTAGTGTTGTAATGTCTGGGAGTCTGTAATACAAGCTCAAC
AGGTTCTTTGCGTGTTTCGATACCCCAAACAAGTGTTTTAATGCACATCT
TGCTTGCGTATTAAGGTATTGTTTTTCAGTGTGGGTGATATTGATTATTT
CCAGGCCATACAATAACTTTGGTATGACAATAGATCTGTAAAGCGTGATG
ATTTGGTTTGGGTGTAAGTGGCGCACTCCCgatgaaatcaaagatgatGT
TACTGACCACATTTCATTTAAACGATACTCCATATGATTTTTAAGTTGAA
GTTTACTAAAGTTCTTTTTCCAGATAAACCCAAGATGTTTCATTGTATCC
TGAGACAAAACAAATTCCCTATCAAGCACAAGAACAGGGTTTTGAAAATG
TGACTTTCCAGATACCACAAATTGAGTTTTCAGGTGATTGAAACTGATGT
TGTGAATTTGACCGTAAGCTGAACATTTGTTGATGAGAGACTGCAATCCA
TGTAAGGTTGGGCTCATAAGGATGAGGTCGTCAGCAAATGCAATGACTGA
TGTGTTGGTTCCGTCCGGTAGGCGTGTTCCTGTATGTGATTCTTTCAAAG
TTTCTAATAGATTTTCGGTGTAAATATTGTACAGATACGGGGAGAGCAGA
GATCCTTGTTTGACTCCTTGAGATAGGGCAAATGGTTGTGATTTACATCC
ATTATACATTACGGTAGATTCACTCTGAAGGTAAGATGATATTAGGTACT
GGACTACTGATCTCGAGATACCTTTGTCTAACAGTTTTTGAAACATAACA
TGCCAATTACAGCTGTCAAAAGCTTTTGTTGCGTCTAAACTACATAGGTA
TACAGATGAGCCGTTGTTGTTATAATAATTGATAGTTTCTTGGATCATTA
GTTCGGCGTGAATTGTTGATGTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065533-exon-scaffold_44-1491911889:31375..32502 | TCONS_00065533-exon-scaffold_44-1491911889:31375..32502 | Clytia hemisphaerica | exon |
| TCONS_00065533-exon-scaffold_44-1510915933:31375..32502 | TCONS_00065533-exon-scaffold_44-1510915933:31375..32502 | Clytia hemisphaerica | exon |
| TCONS_00065533-exon-scaffold_44-1575043694:31375..32502 | TCONS_00065533-exon-scaffold_44-1575043694:31375..32502 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_44 | supercontig | scaffold_44:31375..32502 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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