TCONS_00065538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065538
Unique NameTCONS_00065538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length519

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065538 ID=TCONS_00065538|Name=TCONS_00065538|organism=Clytia hemisphaerica|type=transcript|length=519bp
CTGCTCTCCATCATCAACCATATATTGTACGTACAAATCAGCCTGAGTAA
GAACCTGATGTCACACAACCGCTGAACTTCAAACCGTTCTCGAAAATTAT
ATCAAGCTCTATCTTCTGGACAACCGCTACTGCTTTAAGTTCTCAATCCT
TTACTGAAAAATGTTTATTGACTGGTCATCCTCCATCTTCTTCGACATTA
TAATGTTATAACGTTCCAGAAAGTTTGGTTTGATTCTAAAGAGACATCTC
CCTTCCTAAAAAGGTGACATTGATACCTTGGAATGTAAAGAAGCATAAGA
AGGAACACCTGCCAGATATGAAACTCGAGACCTGGTTTGCACACTTTTTT
ATTGGTAATGCTAATGGTGAAGCATTCATATAGAAGTGCAGCTAAATAAG
GATGACAGACTGTATACAGTGTATATACTATGCTCTtacagattattttt
ttgtttataaataaagcaGTAATTTTTGATTGGTACCTATGTAAACTAgg
aatgaaattatgaaattat
Run BLAST on NCBI

transcript from alignment at scaffold_44:152851..153369

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065538 ID=TCONS_00065538|Name=TCONS_00065538|organism=Clytia hemisphaerica|type=transcript|length=519bp|location=Sequence derived from alignment at scaffold_44:152851..153369 (Clytia hemisphaerica)
ataatttcataatttcattccTAGTTTACATAGGTACCAATCAAAAATTA
CtgctttatttataaacaaaaaaataatctgtaAGAGCATAGTATATACA
CTGTATACAGTCTGTCATCCTTATTTAGCTGCACTTCTATATGAATGCTT
CACCATTAGCATTACCAATAAAAAAGTGTGCAAACCAGGTCTCGAGTTTC
ATATCTGGCAGGTGTTCCTTCTTATGCTTCTTTACATTCCAAGGTATCAA
TGTCACCTTTTTAGGAAGGGAGATGTCTCTTTAGAATCAAACCAAACTTT
CTGGAACGTTATAACATTATAATGTCGAAGAAGATGGAGGATGACCAGTC
AATAAACATTTTTCAGTAAAGGATTGAGAACTTAAAGCAGTAGCGGTTGT
CCAGAAGATAGAGCTTGATATAATTTTCGAGAACGGTTTGAAGTTCAGCG
GTTGTGTGACATCAGGTTCTTACTCAGGCTGATTTGTACGTACAATATAT
GGTTGATGATGGAGAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041069XLOC_041069Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065538-exon-scaffold_44-1491911889:152851..153369TCONS_00065538-exon-scaffold_44-1491911889:152851..153369Clytia hemisphaericaexon
TCONS_00065538-exon-scaffold_44-1510915933:152851..153369TCONS_00065538-exon-scaffold_44-1510915933:152851..153369Clytia hemisphaericaexon
TCONS_00065538-exon-scaffold_44-1575043694:152851..153369TCONS_00065538-exon-scaffold_44-1575043694:152851..153369Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:152851..153369 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.699621	0.685865	0.375154	0	0.243216	0.160527	0.337701	0.865376	1.23456	1.54243	0.834255	1.33513	2.43327	2.83722	1.61064	1.13639	1.1894	1.95491	2.94541	4.23287	3.38123	3.80829	1.90937	4.53871	0.818523	0	7.0555	9.2495	5.09399	7.45254
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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