TCONS_00065545 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065545
Unique NameTCONS_00065545
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065545 ID=TCONS_00065545|Name=TCONS_00065545|organism=Clytia hemisphaerica|type=transcript|length=638bp
GGGATTCTATGTCTCCATTTTTCCAGGCTAGCAGTCTACGTTTCAAAGCT
tcagaattttcttttgttctggaATCCGGTTTTGGCTTCTGGAGTAATAG
TGATGGCATAATCATGGCAGCTTTTAGGGCGATATTGTAGAGGATTGATT
CATTTGACCATTCCCTGATTAGACGTGTGGTCTCATCAATGTAGTCTTTA
CCGGCTCTCCCTGATGGTAACATAAATAGATTCCTTCTGAATTTAACACA
TTGTTCATAAGAGTCATTTATTATTTGAGTTATTTCTAGAAGAGTGAGGT
TTCCCCAGACTGCGGGTTCTTGGTTTTCGTGTCCGACTATGGGTTGTTCC
ATGAGGATATCGGGGGGGATTGGGTTAACTAGGGCTTGTGGTTGTACATT
GTTTGCATCATTTTTCTTGCAGTGTCGTTGATGGTTtgttctgcctcctt
tgctgcTGAATTCCCTTTCACAGAATTTACAAGGGTATGTTTGTTCGATT
TGTGATGATGGGTTTGGTTGTGATAGTGGAAGTATTTTGTCTGGGTTTGG
AGATGTTGTCACAGGCTGGTCtggttttgatttttcgaaCATATTTGAAA
AGGTTGTGCCATTTTGTATTGGTTTGTGTCGAGGGAAG
Run BLAST on NCBI

protein sequence of TCONS_00065545-protein

>TCONS_00065545-protein ID=TCONS_00065545-protein|Name=TCONS_00065545-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
FPRHKPIQNGTTFSNMFEKSKPDQPVTTSPNPDKILPLSQPNPSSQIEQT
YPCKFCEREFSSKGGRTNHQRHCKKNDANNVQPQALVNPIPPDILMEQPI
VGHENQEPAVWGNLTLLEITQIINDSYEQCVKFRRNLFMLPSGRAGKDYI
DETTRLIREWSNESILYNIALKAAMIMPSLLLQKPKPDSRTKENSEALKR
RLLAWKNGDIES
Run BLAST on NCBI

transcript from alignment at scaffold_44:267421..268058

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065545 ID=TCONS_00065545|Name=TCONS_00065545|organism=Clytia hemisphaerica|type=transcript|length=638bp|location=Sequence derived from alignment at scaffold_44:267421..268058 (Clytia hemisphaerica)
CTTCCCTCGACACAAACCAATACAAAATGGCACAACCTTTTCAAATATGt
tcgaaaaatcaaaaccaGACCAGCCTGTGACAACATCTCCAAACCCAGAC
AAAATACTTCCACTATCACAACCAAACCCATCATCACAAATCGAACAAAC
ATACCCTTGTAAATTCTGTGAAAGGGAATTCAgcagcaaaggaggcagaa
caAACCATCAACGACACTGCAAGAAAAATGATGCAAACAATGTACAACCA
CAAGCCCTAGTTAACCCAATCCCCCCCGATATCCTCATGGAACAACCCAT
AGTCGGACACGAAAACCAAGAACCCGCAGTCTGGGGAAACCTCACTCTTC
TAGAAATAACTCAAATAATAAATGACTCTTATGAACAATGTGTTAAATTC
AGAAGGAATCTATTTATGTTACCATCAGGGAGAGCCGGTAAAGACTACAT
TGATGAGACCACACGTCTAATCAGGGAATGGTCAAATGAATCAATCCTCT
ACAATATCGCCCTAAAAGCTGCCATGATTATGCCATCACTATTACTCCAG
AAGCCAAAACCGGATtccagaacaaaagaaaattctgaAGCTTTGAAACG
TAGACTGCTAGCCTGGAAAAATGGAGACATAGAATCCC

Coding sequence (CDS) from alignment at scaffold_44:267421..268058

>TCONS_00065545 ID=TCONS_00065545|Name=TCONS_00065545|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_44:267421..268058 (Clytia hemisphaerica)
TTCCCTCGACACAAACCAATACAAAATGGCACAACCTTTTCAAATATGtt
cgaaaaatcaaaaccaGACCAGCCTGTGACAACATCTCCAAACCCAGACA
AAATACTTCCACTATCACAACCAAACCCATCATCACAAATCGAACAAACA
TACCCTTGTAAATTCTGTGAAAGGGAATTCAgcagcaaaggaggcagaac
aAACCATCAACGACACTGCAAGAAAAATGATGCAAACAATGTACAACCAC
AAGCCCTAGTTAACCCAATCCCCCCCGATATCCTCATGGAACAACCCATA
GTCGGACACGAAAACCAAGAACCCGCAGTCTGGGGAAACCTCACTCTTCT
AGAAATAACTCAAATAATAAATGACTCTTATGAACAATGTGTTAAATTCA
GAAGGAATCTATTTATGTTACCATCAGGGAGAGCCGGTAAAGACTACATT
GATGAGACCACACGTCTAATCAGGGAATGGTCAAATGAATCAATCCTCTA
CAATATCGCCCTAAAAGCTGCCATGATTATGCCATCACTATTACTCCAGA
AGCCAAAACCGGATtccagaacaaaagaaaattctgaAGCTTTGAAACGT
AGACTGCTAGCCTGGAAAAATGGAGACATAGAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041076XLOC_041076Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065545-proteinTCONS_00065545-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065545-exon-scaffold_44-1491911889:267421..268058TCONS_00065545-exon-scaffold_44-1491911889:267421..268058Clytia hemisphaericaexon
TCONS_00065545-exon-scaffold_44-1510915933:267421..268058TCONS_00065545-exon-scaffold_44-1510915933:267421..268058Clytia hemisphaericaexon
TCONS_00065545-exon-scaffold_44-1575043694:267421..268058TCONS_00065545-exon-scaffold_44-1575043694:267421..268058Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:267421..268058 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0826987	0.322577	0	0	0	0	0.212644	0.497688	0.278754	1.12217	0.502709	0.275384	0	0	0	0	0.248326	0	0	0	0.0799578	0	0.0948207	0.0862058	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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